Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00336 ATGGGAAGAGGAAGAGTGGAGCTGAAGAGGATCGAGAACAAAATCAACAGGCAAGTGACCTTCGCGAAGAGAAGAAATGGACTTTTGAAGAAAGCCTATGAGCTTTCCGTTCTTTGCGATGCAGAGGTAGCTCTCATCATCTTCTCCAATAGGGGAAAGCTGTACGAGTTTTGCAGTAGTTCAAGCATGCTCAAAACCCTTGAGAGGTACCAAAAATGCAACTACGGAGCACCAGAGCCTTCTGTTTCCACAAGAGAAGCCATGGAGTTAAGCAGCCAGCAGGAATATTTGAAGCTGAAAGCACGTTATGAAGCTCTGCTGAAATCCCAAAGGAACCTTTTGGGTGAAGATCTTGGGCCTTTGACTAGTAAAGAGCTTGAGTCGCTTGAAAGGCAGTTGGATTCATCACTCAAACAGATCAGATCAACAAGGACTCAGTATATGCTGGATCAGCTCACTGATCTTCAACGCAAGGAACTCTTGCTGAATGAAGCAAACAAGACCCTGAAACATAGGCTAGTGGAAGGCTACCAAATAAATTCACTGCAACTGATTCCAAATGAAGAGGAAGTTGTTTATGATCGACAGCATCCTCAATCTCAAGGAGATGGATTCTTTCATCCCTTAGACTGCGAACCAACTTTGCACATTGGATATCCGCCTGATTCAATAACAGTGGTGGATGCAGGCTCAAGCATGAACAATTACATGCAAGCCTGGTTGCCA 726 44.63 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPSVSTREAMELSSQQEYLKLKARYEALLKSQRNLLGEDLGPLTSKELESLERQLDSSLKQIRSTRTQYMLDQLTDLQRKELLLNEANKTLKHRLVEGYQINSLQLIPNEEEVVYDRQHPQSQGDGFFHPLDCEPTLHIGYPPDSITVVDAGSSMNNYMQAWLP 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3774502 3783246 + Bda033023 Bda11g00336 15444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00336 242 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bda11g00336 242 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bda11g00336 242 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL9 HOMOLOG 1 228 - -
Bda11g00336 242 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bda11g00336 242 Coils Coil 126 146 - -
Bda11g00336 242 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bda11g00336 242 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 228 - -
Bda11g00336 242 Pfam K-box region 89 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bda11g00336 242 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bda11g00336 242 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Bda11g00336 242 SUPERFAMILY SRF-like 2 75 IPR036879 GO:0003677|GO:0046983
Bda11g00336 242 Gene3D - 13 79 IPR036879 GO:0003677|GO:0046983
Bda11g00336 242 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bda11g00336 242 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bda11g00336 242 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g01843 Bda-Chr7:35769626 Bda11g00336 Bda-Chr11:3774502 1.05E-49 dispersed
Bda10g01107 Bda-Chr10:45092866 Bda11g00336 Bda-Chr11:3774502 2.14E-51 dispersed
Bda11g00336 Bda-Chr11:3774502 Bda13g00532 Bda-Chr13:6364512 3.03E-159 dispersed
Bda11g00336 Bda-Chr11:3774502 Bda11g00385 Bda-Chr11:4218295 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16577 PF01486 K-box 1.80E-24 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00336 - - tcc:18608957 423.705