Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda11g00346 | ATGGCGGGGGTCTCTTTGAAGTGCGGGGACTGTGGAGCCCTATTGAGGTCTATGCAAGAAGCTCAAGAGCACGCAGAGCTCACTTCTCACTCCAATTTCTCCGAATCTACCGAAGCAGTCCTCAATCTCGTTTGCACCACATGTGGCAAACCCTGCCGATCAAAAACTGAAACGGACTTGCACACAAAAAGAACTGGCCATGTTGATTTTGCTGATAAGACTTCAGAAGCGGCAAAACCAATAAGTTTGGAGGTTCCCAAAGTAGCTGAAGAAGCAGAGGAGGCTGCAGATGCTAGTACTAGTCAGCCTGAAGAAATGGTTGTGCCGGAGGTTGACAAAAAGTTGCTTGAAGAACTTGAAGCAATGGGGTTCTCAACAGCACGTGCCACACGCGCCCTTCATTACTCTGGTAATTCTGGTGTTGAGGCTGCTGTAAATTGGGTAGTTGAACATGAAGACGATTCTGAGATAGATCAGATGCCTTTGGTACCTTTGAACGCTAAGGCTGAAGCTCAGAAGCCTTCTCTTTCACCTGAAGAAATAAAAGCTAAACAACAAGAGTTAAGAGAACGAGCCCGCAAGAAAAAAGAAGAAGAAGAAAAGAAAAAAGAGAGAGAAAGAGAAAAGGAGAGAATCCGAGTGGGGAAGGAGCTTTTAGAGGCAAAGAGAATTGAAGAAGATAATGAACGGAAAAGGATAATGGCTTTGCGAAAAGCTGAAAAGGATGAAGAGAAACGAGCTCGGGATAAAATTCGTCAAAAATTAGAGGAGGACAAGGCTGAAAGAAGAAGGAAGCTTGGACTGGCACCAGAAGATCCTTCTACTATAAAACCTTCTTCACGTGTTGTTGAGGAGAAAAAGAGCATGTTGCCAGTTAGACCTGCCACGAAGGCTGAGCAAATGCGAGAATGTTTGCGAACTCTTAAACAGCATCACAAGGCAAGTGCATTCAGACTAGTGAAGCGAGCATTCCAGACTCTTCTTACATACGTGGGGAATGTCGCCCGAAATCCTGGTGATGAAAAATTTAGAAAGATAAGACTCACTAACCAATCTTTCCAGGAAAGAGTTGGCGGATTGAAAGGCGGAGTGGAGTTTCTGGAGCTGTGCGGGTTCGAGAAAACTGAAGGAGATGAGTTTTTGTTTCTGCCAAGAGAGAAAGTGGACATTGGGGTGTTGAACTCAGCTGGTTCAGAGCTGGACTCTGCTTTGAAGAATCCCTTTTTTGGGGTTCTTTAA | 1239 | 44.96 | MAGVSLKCGDCGALLRSMQEAQEHAELTSHSNFSESTEAVLNLVCTTCGKPCRSKTETDLHTKRTGHVDFADKTSEAAKPISLEVPKVAEEAEEAADASTSQPEEMVVPEVDKKLLEELEAMGFSTARATRALHYSGNSGVEAAVNWVVEHEDDSEIDQMPLVPLNAKAEAQKPSLSPEEIKAKQQELRERARKKKEEEEKKKEREREKERIRVGKELLEAKRIEEDNERKRIMALRKAEKDEEKRARDKIRQKLEEDKAERRRKLGLAPEDPSTIKPSSRVVEEKKSMLPVRPATKAEQMRECLRTLKQHHKASAFRLVKRAFQTLLTYVGNVARNPGDEKFRKIRLTNQSFQERVGGLKGGVEFLELCGFEKTEGDEFLFLPREKVDIGVLNSAGSELDSALKNPFFGVL | 412 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 3865693 | 3873100 | - | Bda005078.1 | Bda11g00346 | 15454 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda11g00346 | 412 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 45 | 67 | IPR013087 | - | |
Bda11g00346 | 412 | MobiDBLite | consensus disorder prediction | 278 | 292 | - | - | |
Bda11g00346 | 412 | MobiDBLite | consensus disorder prediction | 169 | 210 | - | - | |
Bda11g00346 | 412 | MobiDBLite | consensus disorder prediction | 175 | 210 | - | - | |
Bda11g00346 | 412 | ProSiteProfiles | Ubiquitin-associated domain (UBA) profile. | 110 | 151 | IPR015940 | - | |
Bda11g00346 | 412 | Gene3D | - | 304 | 402 | - | - | |
Bda11g00346 | 412 | SUPERFAMILY | UBA-like | 91 | 163 | IPR009060 | GO:0005515 | |
Bda11g00346 | 412 | Coils | Coil | 181 | 215 | - | - | |
Bda11g00346 | 412 | Coils | Coil | 237 | 261 | - | - | |
Bda11g00346 | 412 | SMART | uba_6 | 112 | 150 | IPR015940 | - | |
Bda11g00346 | 412 | SMART | PGNneu | 322 | 385 | - | - | |
Bda11g00346 | 412 | Gene3D | - | 112 | 157 | - | - | |
Bda11g00346 | 412 | Pfam | UBA/TS-N domain | 116 | 147 | IPR015940 | - | |
Bda11g00346 | 412 | PANTHER | F13M7.16 PROTEIN | 1 | 412 | - | - | |
Bda11g00346 | 412 | SUPERFAMILY | PUG domain-like | 301 | 408 | IPR036339 | - | |
Bda11g00346 | 412 | MobiDBLite | consensus disorder prediction | 238 | 295 | - | - | |
Bda11g00346 | 412 | Pfam | PUB domain | 320 | 389 | IPR018997 | - | |
Bda11g00346 | 412 | MobiDBLite | consensus disorder prediction | 238 | 270 | - | - | |
Bda11g00346 | 412 | PANTHER | F13M7.16 PROTEIN | 1 | 412 | - | - | |
Bda11g00346 | 412 | CDD | UBA_PUB_plant | 110 | 158 | - | - | |
Bda11g00346 | 412 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 8 | 30 | IPR013087 | - | |
Bda11g00346 | 412 | CDD | PUB_UBA_plant | 305 | 412 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda01g01802 | Bda-Chr1:54239173 | Bda11g00346 | Bda-Chr11:3865693 | 5.02E-10 | transposed | |
Bda11g00346 | Bda-Chr11:3865693 | Bda13g00486 | Bda-Chr13:5748951 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda11g00346 | K24348 | - | jre:109003439 | 632.869 |