Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00346 ATGGCGGGGGTCTCTTTGAAGTGCGGGGACTGTGGAGCCCTATTGAGGTCTATGCAAGAAGCTCAAGAGCACGCAGAGCTCACTTCTCACTCCAATTTCTCCGAATCTACCGAAGCAGTCCTCAATCTCGTTTGCACCACATGTGGCAAACCCTGCCGATCAAAAACTGAAACGGACTTGCACACAAAAAGAACTGGCCATGTTGATTTTGCTGATAAGACTTCAGAAGCGGCAAAACCAATAAGTTTGGAGGTTCCCAAAGTAGCTGAAGAAGCAGAGGAGGCTGCAGATGCTAGTACTAGTCAGCCTGAAGAAATGGTTGTGCCGGAGGTTGACAAAAAGTTGCTTGAAGAACTTGAAGCAATGGGGTTCTCAACAGCACGTGCCACACGCGCCCTTCATTACTCTGGTAATTCTGGTGTTGAGGCTGCTGTAAATTGGGTAGTTGAACATGAAGACGATTCTGAGATAGATCAGATGCCTTTGGTACCTTTGAACGCTAAGGCTGAAGCTCAGAAGCCTTCTCTTTCACCTGAAGAAATAAAAGCTAAACAACAAGAGTTAAGAGAACGAGCCCGCAAGAAAAAAGAAGAAGAAGAAAAGAAAAAAGAGAGAGAAAGAGAAAAGGAGAGAATCCGAGTGGGGAAGGAGCTTTTAGAGGCAAAGAGAATTGAAGAAGATAATGAACGGAAAAGGATAATGGCTTTGCGAAAAGCTGAAAAGGATGAAGAGAAACGAGCTCGGGATAAAATTCGTCAAAAATTAGAGGAGGACAAGGCTGAAAGAAGAAGGAAGCTTGGACTGGCACCAGAAGATCCTTCTACTATAAAACCTTCTTCACGTGTTGTTGAGGAGAAAAAGAGCATGTTGCCAGTTAGACCTGCCACGAAGGCTGAGCAAATGCGAGAATGTTTGCGAACTCTTAAACAGCATCACAAGGCAAGTGCATTCAGACTAGTGAAGCGAGCATTCCAGACTCTTCTTACATACGTGGGGAATGTCGCCCGAAATCCTGGTGATGAAAAATTTAGAAAGATAAGACTCACTAACCAATCTTTCCAGGAAAGAGTTGGCGGATTGAAAGGCGGAGTGGAGTTTCTGGAGCTGTGCGGGTTCGAGAAAACTGAAGGAGATGAGTTTTTGTTTCTGCCAAGAGAGAAAGTGGACATTGGGGTGTTGAACTCAGCTGGTTCAGAGCTGGACTCTGCTTTGAAGAATCCCTTTTTTGGGGTTCTTTAA 1239 44.96 MAGVSLKCGDCGALLRSMQEAQEHAELTSHSNFSESTEAVLNLVCTTCGKPCRSKTETDLHTKRTGHVDFADKTSEAAKPISLEVPKVAEEAEEAADASTSQPEEMVVPEVDKKLLEELEAMGFSTARATRALHYSGNSGVEAAVNWVVEHEDDSEIDQMPLVPLNAKAEAQKPSLSPEEIKAKQQELRERARKKKEEEEKKKEREREKERIRVGKELLEAKRIEEDNERKRIMALRKAEKDEEKRARDKIRQKLEEDKAERRRKLGLAPEDPSTIKPSSRVVEEKKSMLPVRPATKAEQMRECLRTLKQHHKASAFRLVKRAFQTLLTYVGNVARNPGDEKFRKIRLTNQSFQERVGGLKGGVEFLELCGFEKTEGDEFLFLPREKVDIGVLNSAGSELDSALKNPFFGVL 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3865693 3873100 - Bda005078.1 Bda11g00346 15454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00346 412 ProSitePatterns Zinc finger C2H2 type domain signature. 45 67 IPR013087 -
Bda11g00346 412 MobiDBLite consensus disorder prediction 278 292 - -
Bda11g00346 412 MobiDBLite consensus disorder prediction 169 210 - -
Bda11g00346 412 MobiDBLite consensus disorder prediction 175 210 - -
Bda11g00346 412 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 110 151 IPR015940 -
Bda11g00346 412 Gene3D - 304 402 - -
Bda11g00346 412 SUPERFAMILY UBA-like 91 163 IPR009060 GO:0005515
Bda11g00346 412 Coils Coil 181 215 - -
Bda11g00346 412 Coils Coil 237 261 - -
Bda11g00346 412 SMART uba_6 112 150 IPR015940 -
Bda11g00346 412 SMART PGNneu 322 385 - -
Bda11g00346 412 Gene3D - 112 157 - -
Bda11g00346 412 Pfam UBA/TS-N domain 116 147 IPR015940 -
Bda11g00346 412 PANTHER F13M7.16 PROTEIN 1 412 - -
Bda11g00346 412 SUPERFAMILY PUG domain-like 301 408 IPR036339 -
Bda11g00346 412 MobiDBLite consensus disorder prediction 238 295 - -
Bda11g00346 412 Pfam PUB domain 320 389 IPR018997 -
Bda11g00346 412 MobiDBLite consensus disorder prediction 238 270 - -
Bda11g00346 412 PANTHER F13M7.16 PROTEIN 1 412 - -
Bda11g00346 412 CDD UBA_PUB_plant 110 158 - -
Bda11g00346 412 ProSitePatterns Zinc finger C2H2 type domain signature. 8 30 IPR013087 -
Bda11g00346 412 CDD PUB_UBA_plant 305 412 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01802 Bda-Chr1:54239173 Bda11g00346 Bda-Chr11:3865693 5.02E-10 transposed
Bda11g00346 Bda-Chr11:3865693 Bda13g00486 Bda-Chr13:5748951 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00346 K24348 - jre:109003439 632.869