Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00347 ATGGGCAAGGAAAAGGTTCACATCAACATTGTGGTCATTGGTCATGTCGACTCTGGAAAATCAACCACTACTGGCCATCTCATCTACAAGCTAGGAGGCATTGACAAGAGAGTCATAGAGAGGTTCGAGAAGGAAGCAGCTGAAATGAACAAGAGATCCTTCAAGTACGCTTGGGTGCTCGACAAGCTTAAGGCTGAGCGGGAGCGTGGAATCACCATTGACATTGCTTTATGGAAGTTTGAGACTACAAAGTACTACTGTACGGTCATCGATGCTCCTGGACATCGTGATTTTATTAAGAATATGATTACTGGAACATCCCAAGCAGATTGTGCTGTGCTTATTATTGATTCCACCACTGGTGGTTTTGAAGCTGGTATTTCCAAGGATGGCCAGATGGATGCCACTACTCCCAAATATTCCAAGGGAAGATATGATGAAATTGTCAAAGAAGTATCCTCCTACCTGAAAAAGGTTGGGTACAACCCTGATAAAATTCCTTTCGTTCCCATCTCTGGTTTTGAGGGTGACAACATGATCGAAAGGTCGACAAACCTTGATTGGTACAAGGGCCCAACTCTCCTCGATGCTCTCGACATGATCCAGGAGCCCAAGAGGCCTTCAGACAAGCCCCTTCGACTTCCACTTCAGGACGTCTACAAGATCGGTGGCATTGGCACTGTCCCAGTTGGCCGAGTCGAAACGGGTGTTCTAAAACCTGGAATGGTGGTCACCTTCGGACCCACCGGACTGACCACTGAAGTCAAGTCTGTTGAAATGCACCATGAGGCTCTTCAGGAAGCTCTCCCCGGCGACAATGTCGGATTCAACGTGAAGAATGTGGCCGTAAAAGATCTTAAACGAGGCTTTGTCGCATCCAACTCCAAGGACGATCCTACCAAGGAGGCTGCCAACTTCACATCACAGGTTATTATCATGAACCACCCTGGCCAGATCGGAAATGGCTATGCCCCGGTCCTCGATTGCCACACCTCCCACATCGCTGTGAAGTTTGCAGAGATTCTTACGAAAATCGACAGACGGTCTGGTAAGGAGCTGGAGAAGGAGCCGAAGTTTTTGAAGAATGGTGATGCTGGAATGGTGAAGATGATTCCCACCAAGCCCATGGTGGTCGAGACCTTCTCCGAATATCCACCACTCGGTCGTTTTGCTGTCAGGGACATGCGGCAGACTGTGGCCGTCGGTGTTATAAAGAGCGTAGAGAAGAAGGATGCAAGCGGAGCCAAAGTCACCAAATCTGCTGCCAAGAAAGGAGGAAAGTAA 1284 48.52 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQMDATTPKYSKGRYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDMIQEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPTGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPTKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVEKKDASGAKVTKSAAKKGGK 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3873899 3875876 + Bda005079.1 Bda11g00347 15455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00347 427 CDD EF1_alpha_III 301 404 - -
Bda11g00347 427 Pfam Elongation factor Tu domain 2 226 291 IPR004161 GO:0005525
Bda11g00347 427 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 5 208 IPR000795 GO:0003924|GO:0005525
Bda11g00347 427 SUPERFAMILY Translation proteins 209 299 IPR009000 -
Bda11g00347 427 Pfam Elongation factor Tu C-terminal domain 300 407 IPR004160 -
Bda11g00347 427 PANTHER TRANSLATION FACTOR 1 132 - -
Bda11g00347 427 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 61 76 IPR031157 -
Bda11g00347 427 PRINTS GTP-binding elongation factor signature 104 115 IPR000795 GO:0003924|GO:0005525
Bda11g00347 427 PRINTS GTP-binding elongation factor signature 9 22 IPR000795 GO:0003924|GO:0005525
Bda11g00347 427 PRINTS GTP-binding elongation factor signature 68 76 IPR000795 GO:0003924|GO:0005525
Bda11g00347 427 PRINTS GTP-binding elongation factor signature 88 98 IPR000795 GO:0003924|GO:0005525
Bda11g00347 427 Gene3D Translation factors 207 294 - -
Bda11g00347 427 Gene3D Translation factors 301 408 - -
Bda11g00347 427 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 304 407 IPR009001 -
Bda11g00347 427 PANTHER ELONGATION FACTOR 1-ALPHA 1 132 - -
Bda11g00347 427 PANTHER ELONGATION FACTOR 1-ALPHA 132 425 - -
Bda11g00347 427 Gene3D - 1 206 IPR027417 -
Bda11g00347 427 PANTHER TRANSLATION FACTOR 132 425 - -
Bda11g00347 427 CDD EF1_alpha 9 205 - -
Bda11g00347 427 CDD EF1_alpha_II 208 298 - -
Bda11g00347 427 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 227 IPR027417 -
Bda11g00347 427 Pfam Elongation factor Tu GTP binding domain 6 121 IPR000795 GO:0003924|GO:0005525
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda02g00774 Bda-Chr2:48458204 Bda11g00347 Bda-Chr11:3873899 0 dispersed
Bda09g01471 Bda-Chr9:46517877 Bda11g00347 Bda-Chr11:3873899 0 dispersed
Bda11g00347 Bda-Chr11:3873899 Bda15g00380 Bda-Chr15:6732927 0 dispersed
Bda11g00347 Bda-Chr11:3873899 Bda08g00037 Bda-Chr8:299944 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00347 K03231 - mnt:21412438 831.247