Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00366 GTTCTGTCTTCTATGGCGGCGAGAACCGGGAGGGAGAAACAACGTTACGAGGATGATTTCAGGCTCGTCGCTGGATGCATACCGTACAAGATTGAGAGAAAGATTAAACGGGATAATCTGCTTGTTCTCATGATTTCTTCCCCAAATAAAGATTATCTCGTCTTTCCCAAGGGTGGCTGGGAAGAAGACGAGACCATAGCCGAAGCAGCTTCCCGGGAGGCCTTCGAGGAAGCCGGCGTCAAAGGAATACTTGCCGAAACTCCACTTGGAGTTTGGGAGTTTAGAAGCAAGAGCAGAGAGAAGATGAGCAGTTCCGGCTCCGACGGAAGTTGCAGAGGTTATATGTTTGGAATGGAGGTGACCCAAGAGCACGAATTCTGGCCAGAACGCTCTAATTATCACAGAAAATGGGTGAACGCAGAGGAGGCATTCAGATTCTGCAGGTACGACTGGATGAGAGAAGCTCTTCGCAGACTTCTGGCTTCTCTCCCTGTTTCAAACGATATTGACTTGGCTTTATGA 522 48.85 VLSSMAARTGREKQRYEDDFRLVAGCIPYKIERKIKRDNLLVLMISSPNKDYLVFPKGGWEEDETIAEAASREAFEEAGVKGILAETPLGVWEFRSKSREKMSSSGSDGSCRGYMFGMEVTQEHEFWPERSNYHRKWVNAEEAFRFCRYDWMREALRRLLASLPVSNDIDLAL 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4035383 4036400 + Bda005102.1 Bda11g00366 15474

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00366 173 SUPERFAMILY Nudix 14 162 IPR015797 -
Bda11g00366 173 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 5 162 - -
Bda11g00366 173 ProSiteProfiles Nudix hydrolase domain profile. 19 160 IPR000086 -
Bda11g00366 173 PANTHER DIPHOSPHOINOSITOL POLYPHOSPHATE PHOSPHOHYDROLASE 3 161 - -
Bda11g00366 173 Pfam NUDIX domain 34 158 IPR000086 -
Bda11g00366 173 CDD Nudix_Hydrolase_9 22 153 - -
Bda11g00366 173 PANTHER NUDIX HYDROLASE 12, MITOCHONDRIAL 3 161 - -
Bda11g00366 173 ProSitePatterns Nudix box signature. 58 79 IPR020084 GO:0016787
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00366 K07766 E3.6.1.52; diphosphoinositol-polyphosphate diphosphatase [EC:3.6.1.52] - jre:108997296 211.075
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g00366 Bda-Chr11:4035383 Bda14g00426 Bda-Chr14:3089504 1.16E-42 dispersed
Bda11g00366 Bda-Chr11:4035383 Bda15g00102 Bda-Chr15:3254896 2.02E-45 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1371 . . . Bda11g00366 Bpe13g00839 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g00366 . . . Bma06g01317 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004911 1 2 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 4 4 2 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g00366 Bda_Chr11 FPKM 186.450546 179.040131 125.706017 120.129036 158.049683 238.126266 148.737427 72.162514 79.057022