Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00370 ATGAGTGGTTTTTGTTGCTGCTACTGTGGAGATGAACATGAAGAGTACTCGCTTCCAAGTAACCTCATATATAGATACTGCATCTGCCTAAGATTTTACTTCCACCAGCTGTTCAACGGGTATAGCACAACAGTTCCAAGGATTGAAGGGCGCTCTATGTCTTTGCCAATACAAGGCACTACTTCTTTGGCAGCTACTGGGTTCGACTCAGAATTAACTGACAATTCTCTGAATGAAAATCATCTGTCATTGATCAGACAATTACCTTTTACTGCCAAGCAAAGATACTCTCGTTTGCCGCGTGATGGGTTGGTTTCACGAGGAGACACGTTAATGTCACATTTCCAAGATGATTCACAACCGTCCTCAGATAATGCTTTGAACCAAAATATTGAATACGGAGTACTCTATGTGCAACCATCTTCAGAAGATGAAGAAGTCTGCCCCACATGTCTCGATGAATATACTCTAGACAATCCAAAAATTATGACCAGATGCTCCCACCATTTTCATCTTGGTTGTATATACGAGTGGTTGGAAAGAAGTGAAAGTTGTCCCATTTGTGGCAAGGTATGCACATATTAG 585 41.37 MSGFCCCYCGDEHEEYSLPSNLIYRYCICLRFYFHQLFNGYSTTVPRIEGRSMSLPIQGTTSLAATGFDSELTDNSLNENHLSLIRQLPFTAKQRYSRLPRDGLVSRGDTLMSHFQDDSQPSSDNALNQNIEYGVLYVQPSSEDEEVCPTCLDEYTLDNPKIMTRCSHHFHLGCIYEWLERSESCPICGKVCTY 194
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4052956 4054734 + Bda005107.1 Bda11g00370 15478

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00370 194 PANTHER OS01G0926200 PROTEIN 1 126 - -
Bda11g00370 194 ProSiteProfiles Zinc finger RING-type profile. 148 188 IPR001841 -
Bda11g00370 194 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 128 192 IPR013083 -
Bda11g00370 194 SUPERFAMILY RING/U-box 135 192 - -
Bda11g00370 194 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 124 191 - -
Bda11g00370 194 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 126 - -
Bda11g00370 194 PANTHER OS01G0926200 PROTEIN 124 191 - -
Bda11g00370 194 Pfam RING-H2 zinc finger domain 145 188 IPR024766 GO:0008270
Bda11g00370 194 SMART ring_2 148 188 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00370 - - - qlo:115982384 261.151
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g00370 Bda-Chr11:4052956 Bda12g00210 Bda-Chr12:2055104 1.49E-50 dispersed
Bda11g00370 Bda-Chr11:4052956 Bda13g00508 Bda-Chr13:6048273 2.46E-108 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1365 . . . Bda11g00370 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g00370 Bpe14g00823 . . Bma06g01322 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0018059 2 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 5
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g00370 Bda_Chr11 FPKM 19.525606 19.49309 6.645238 7.78361 4.316176 4.024289 3.820572 0.0 0.0