Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00373 ATGCATTTTGCTAAGCTCGATGATTCTCCTATGTTCCGCAAGCAGATACAAAGCTTGGAGGAGAGTGCTGAATCCTTAAGGGAAAGAAGCTTAAAGTTTTACAAAGGATGTCGAAAATACACTGAAGGGCTTGGAGAGTTTTATGATGGAGACATTGCCTTTGCCAGTGCCCTAGAAGCCTTTGGTGGAGGGCATAATGATCCCATAAGTGTGGCTTTTGGAGGCCCTGTTATGACCAAATTTACAATTGCACTGAGGGAAATTGGGACATACAAGGAAGTCCTTCGGTCCCAGGTGGAGCATATGTTAAATGACAGATTGCTACACTTCGTAAATATTGATTTGCTCGAGGTGAAGGAAGCAAGGAAGCGATTTGATAAAGCTAGCCTTCTTTATGACCAGGCTCGTGAGAAGTTTTTATCTCTTAGGAAGGGTACAAAAAACGACATAGCTGCTCTTCTGGAAGAGGAACTTCACAGTGCAAGATCTGCCTTCGAGCAAGCGCGATTTAATTTGGTAACCGCACTTTCTAATGTTGAAGCTAAAAAAAGGTTTGAATTTTTGGAAGCAGTGAGTGGGACGATGGATGCACATCTCAGATATTTCAAACAGGGGTATGAACTGTTACATCAAATGGAGCCATACATTAACCAGGTGTTAACTTATGCTCAACAGTCACGTGAAAGATCCAACTATGAGCAAGCAGCTCTCAATGAAAGGATGCAAGAGTACAAAAGGCAGGTTGATCGAGAAAGTAGGTGGTCTTCCAATGGCTCTAATGGATCTCCAAATGGAGATGGTATACAAGCCATCGGTAGAAGTTCACATAAAATGATAGAGGCGGTAATGCAATCTGCCACGAAGGGAAAGGTTCAAACCATTCGACAAGGCTATCTCTCAAAACGGTCGTCAAACTTGAGAGGTGACTGGAAAAGAAGATTTTTTGTTCTTGATAGCCGTGGAATGTTGTACTATTATCGAAAGCAGTGCATTAAATCATCTGGCTCTTCCGGTCAGCTATCCAATCAGAGGAATAGTTCTGAGATTGGCTCGGGACTGCTCAGCCGCTGGCTTTCTTCTCATTATCATGGTGGAGTACATGATGAGAAATCTGTTGCACATCACACCGTGAACCTGCTGACATCAACAATCAAAGTTGATGCCGACCAATCAGACCTTAGGTTTTGTTTCAGGATCATTTCACCAACAAAAAATTACACTCTGCAGGCAGAGAGTGCGATGGATCAAATGGATTGGATTGAGAAGATAACAGGAGTTATTGCTTCTTTACTTAGTTCTCAGGCTCCTGAGAGGTGTTTGTCAGCTAGTCCAATGGCAAGTGGTCATGATAGGTCTGCCAGTGAGAGTAGTTCTTTTGAAAGTTCTGACTTTGATCAGACTGCAGTTGAAGAATTTACAACTGAGAGGAGCCTATCTTCTTCTCACCAAGACCGCCCATCCAGGAATTTGCTACAGCAACGGTCCTGTGTAAAAATTGAGAAGCCAATTGATATACTGAGAAAAGTTTGTGGCAATGATAAATGTGCTGATTGTGGTGCCGCTGAACCAGATTGGGCATCTTTGAACCTAGGAGTTCTTGTTTGCATTGAATGCTCTGGTGTTCATAGAAATCTTGGTGTACACATATCTAAGGTAAGGTCCCTAACCTTGGATGTCAAAGTGTGGGAGCCTTCTGTCATCAGTTTGTTTCAGTCTCTAGGCAATGCATTTGCCAACTCTGTGTGGGAGGAGTTATTGCAGTCGAGAAGTGCTTTTCAGGTTGATCTTGTCTCGACAGGGTTTTACAAATCTGATAAACAGCAGTTGCTTTTCATCAACAAACCTAATCATTCTGATTCTATATCAATAAAGGAGAAGTTCATTCATGGAAAGTATGCAGAAAAGCTTTTTGTTCGTAAGCCAAAAGACAATCAATATCCGCATGTAATTGCGCTACAAATGTGGGAGGGTGTACGCTCTAACGACAAGAAAGCTGTTTATCGTCACATTGTCAACTCCGAGACTGATTTAAATACTGTATATGACCATGCTTCATGGGGGTCTCAATCTCTAGCCAAAGTGATGCTATTGCAAGAGCAAAGTGGCCTACAGCACAGCTCTTGTTATACGCCTGCCGAAGCAATTGAAAGGTCTTCAACTAGCTCTTTGAATTTAGGGGGTACTAGTGAAAGCCAGAGTATAGACGATCTAGATGGGTGCACCCTCTTGCACCTTGCCTGTGAAACCTCTGACATTGGGATGCTTGAACTTCTACTGCAGTATGGTGCAAATATAAATGCTATCGACTCAAGAGGTCAAACGCCACTTCACTGGTGTATCTTTAAGGGCAAGACTACATTCGCAAAGTTTCTTCTGACAAGGGGAGCTGACCCACGAGCTGCTGATGGTGAGGGTAGAACCCTTTTTCAGCTTGCAATGGAGTCAAACTGCAATGATAGGGAGATACTTGCTCTTTTAGCAGACTCAAACGGGTGA 2496 42.99 MHFAKLDDSPMFRKQIQSLEESAESLRERSLKFYKGCRKYTEGLGEFYDGDIAFASALEAFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHMLNDRLLHFVNIDLLEVKEARKRFDKASLLYDQAREKFLSLRKGTKNDIAALLEEELHSARSAFEQARFNLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEQAALNERMQEYKRQVDRESRWSSNGSNGSPNGDGIQAIGRSSHKMIEAVMQSATKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCIKSSGSSGQLSNQRNSSEIGSGLLSRWLSSHYHGGVHDEKSVAHHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESAMDQMDWIEKITGVIASLLSSQAPERCLSASPMASGHDRSASESSSFESSDFDQTAVEEFTTERSLSSSHQDRPSRNLLQQRSCVKIEKPIDILRKVCGNDKCADCGAAEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVISLFQSLGNAFANSVWEELLQSRSAFQVDLVSTGFYKSDKQQLLFINKPNHSDSISIKEKFIHGKYAEKLFVRKPKDNQYPHVIALQMWEGVRSNDKKAVYRHIVNSETDLNTVYDHASWGSQSLAKVMLLQEQSGLQHSSCYTPAEAIERSSTSSLNLGGTSESQSIDDLDGCTLLHLACETSDIGMLELLLQYGANINAIDSRGQTPLHWCIFKGKTTFAKFLLTRGADPRAADGEGRTLFQLAMESNCNDREILALLADSNG 831
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4099611 4110556 + Bda005111.1 Bda11g00373 15481

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00373 831 Gene3D - 723 830 IPR036770 -
Bda11g00373 831 CDD ArfGap 503 632 - -
Bda11g00373 831 Pfam Putative GTPase activating protein for Arf 503 640 IPR001164 GO:0005096
Bda11g00373 831 Gene3D - 285 440 IPR011993 -
Bda11g00373 831 SMART 5bar 11 218 IPR004148 GO:0005515|GO:0005737
Bda11g00373 831 ProSiteProfiles Ankyrin repeat profile. 771 803 IPR002110 GO:0005515
Bda11g00373 831 CDD PH_ACAP 295 432 - -
Bda11g00373 831 Pfam BAR domain of APPL family 6 232 - -
Bda11g00373 831 Gene3D Arf GTPase activating protein 480 647 IPR038508 -
Bda11g00373 831 SMART PH_update 293 430 IPR001849 -
Bda11g00373 831 MobiDBLite consensus disorder prediction 447 463 - -
Bda11g00373 831 SUPERFAMILY Ankyrin repeat 735 826 IPR036770 -
Bda11g00373 831 Pfam Ankyrin repeats (many copies) 741 792 IPR002110 GO:0005515
Bda11g00373 831 SUPERFAMILY BAR/IMD domain-like 6 315 IPR027267 -
Bda11g00373 831 Pfam PH domain 294 427 IPR001849 -
Bda11g00373 831 Gene3D Arfaptin homology (AH) domain/BAR domain 4 251 IPR027267 -
Bda11g00373 831 MobiDBLite consensus disorder prediction 441 463 - -
Bda11g00373 831 PRINTS HIV Rev interacting protein signature 512 531 IPR001164 GO:0005096
Bda11g00373 831 PRINTS HIV Rev interacting protein signature 554 575 IPR001164 GO:0005096
Bda11g00373 831 PRINTS HIV Rev interacting protein signature 531 548 IPR001164 GO:0005096
Bda11g00373 831 SUPERFAMILY ArfGap/RecO-like zinc finger 500 640 IPR037278 -
Bda11g00373 831 MobiDBLite consensus disorder prediction 253 269 - -
Bda11g00373 831 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD1 1 829 - -
Bda11g00373 831 ProSiteProfiles Ankyrin repeat region circular profile. 738 769 - -
Bda11g00373 831 PANTHER CENTAURIN/ARF 1 829 IPR045258 GO:0005096
Bda11g00373 831 Coils Coil 118 138 - -
Bda11g00373 831 ProSiteProfiles ARF GTPase-activating proteins domain profile. 500 645 IPR001164 GO:0005096
Bda11g00373 831 Coils Coil 227 247 - -
Bda11g00373 831 SUPERFAMILY PH domain-like 236 427 - -
Bda11g00373 831 SMART ANK_2a 771 800 IPR002110 GO:0005515
Bda11g00373 831 SMART ANK_2a 738 767 IPR002110 GO:0005515
Bda11g00373 831 ProSiteProfiles PH domain profile. 292 428 IPR001849 -
Bda11g00373 831 ProSiteProfiles Ankyrin repeat profile. 738 770 IPR002110 GO:0005515
Bda11g00373 831 CDD BAR_SFC_plant 14 215 IPR035670 -
Bda11g00373 831 MobiDBLite consensus disorder prediction 247 270 - -
Bda11g00373 831 SMART arf_gap_3 500 645 IPR001164 GO:0005096
Bda11g00373 831 ProSiteProfiles Ankyrin repeat region circular profile. 771 802 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00373 K12489 ACAP; Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein - qsu:111988141 1396.72
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g00373 Bda-Chr11:4099611 Bda02g00475 Bda-Chr2:45647532 1.92E-17 dispersed
Bda10g00199 Bda-Chr10:6945151 Bda11g00373 Bda-Chr11:4099611 7.00E-12 transposed
Bda10g01212 Bda-Chr10:46082886 Bda11g00373 Bda-Chr11:4099611 0 transposed
Bda11g00373 Bda-Chr11:4099611 Bda13g00516 Bda-Chr13:6196309 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1342 . . . Bda11g00373 Bpe13g00827 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00226 . . Blo02g00208 . . Bda11g00373 Bpe14g00814 . . Bma06g01328 . . . . . . . . Cpe03g01178 . . . . . . . . . . . . . . . . Chy07g01544 Cme07g01989
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004542 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 2 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g00373 Bda_Chr11 FPKM 6.395983 7.270909 2.958451 2.884532 6.792095 5.672193 6.411667 4.042124 3.264011