Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00378 ATGGTGGCAACCAAATCCAGAGCTGGGGATAGTGTGCCCTGCGATTACTGCACTGAACAACTAGCGGTTCTCTACTGTAGAGCTGATTCAGCGAGGCTGTGCTTGTTTTGCGATCAGCATGTTCATGCTGCCAACTTGCTATCTCGGAAACATCTCCGATCTCAGATCTGCGATAATTGTGGCTCTGAGCCGGTCTCGGTTCGTTGTTCGACTGACAATCTCGTTCTCTGTCAAGAATGTGATTGGGACGCCCATGGGAGTTGCTCTGTCTCTGCTGCACACGATCGGAGTCCGATTGAAGGCTTCTCTGGCTGCCCTTCCGCGCTCGAGCTTGCTTCCTCGTGGGGCGTAGATCTAGTCTCGAAGAGGACCGGCCAATCTTCGCCCTTGTTTCAGAGCTGGGGATACGCCAAAGATGTGACCATTCCGATGGAGTCTTGGGCGGCGCATAAATCTGACGGGGCAGTTAATCTACAAGACTTGATTGTGCCGAACGAGAACACCATGGTTTTTGCTAATTTAAATTACGAGGAGGAGATTTCTGGGGTCAAGGGGCAAAGTTTAAGCTGCGGAAAGCGCAAGCAAGTCATACATAAACAGTTGATTGAGTTATTTCGGCGAGAATTTGAGGGAGGTGGTGACATGAATGGCATGGGTGGTGGTGGCGGTAGTAATGTGAATGACGAAGGTGGGGGTGTATTGGAGAATATAGTGCCAGGGACACCAAATCGGAGTTGTTGGCCCGGAAATGTTGGGATTGATGGGGTTTCGGCCGGTATTACTGCTAACCAATCTTCGCAGGAACAAGCACCATTCACTTCATTGCTAATGACGACGACTCAACTCGATTCGAATGGGAGTGAGCACATCATCGATGGAAATATTTTGTGGGATAACAATTCCAATAATCAGACTATTCAGATTTGGGATTTTAATTTAGGAAGGTCGAGGGATCATGAAGTATCAAGTCCATTAGAAGTTGCATATGATGCCAATGACTCAAAATTCATGATAACGAATTTTGGGGAACTTACGAAAGAAACATCTTTGAAAAACAAAAAGAAGTTGGGAGATATATACCGCTTCAATTGCCAGACGGCCCATGACGATATGACATCGATTAATAATAACGCCAATAACCGCACTGCAAGCCAGGGTCCTGCCACATCCGAGAGCAACAACTTGCCAATCAGAAAGCCATCTTTGGCTGCAGCCTTTGATCAGCCGCAACCTTGTAGTAATGCTATTGAACGATCTATTCTGGGAAGAAGGGATCGGGCCAAATCGCCATCGGCAACCAAAGCAAACCTAGAGCTTCTGGCACAAAACAGAGGCAATGCCATGCAACGATATCAAGAGAAAAAGAAAAACCGAAGGTATGATAAGCGCATTAGATATGAGTCAAGGAAGGCAAGAGCTGACACTAGGAAGAGAGTCAAGGGTCGATTTGTGAAGGCCAACAAACCTTGA 1470 47.07 MVATKSRAGDSVPCDYCTEQLAVLYCRADSARLCLFCDQHVHAANLLSRKHLRSQICDNCGSEPVSVRCSTDNLVLCQECDWDAHGSCSVSAAHDRSPIEGFSGCPSALELASSWGVDLVSKRTGQSSPLFQSWGYAKDVTIPMESWAAHKSDGAVNLQDLIVPNENTMVFANLNYEEEISGVKGQSLSCGKRKQVIHKQLIELFRREFEGGGDMNGMGGGGGSNVNDEGGGVLENIVPGTPNRSCWPGNVGIDGVSAGITANQSSQEQAPFTSLLMTTTQLDSNGSEHIIDGNILWDNNSNNQTIQIWDFNLGRSRDHEVSSPLEVAYDANDSKFMITNFGELTKETSLKNKKKLGDIYRFNCQTAHDDMTSINNNANNRTASQGPATSESNNLPIRKPSLAAAFDQPQPCSNAIERSILGRRDRAKSPSATKANLELLAQNRGNAMQRYQEKKKNRRYDKRIRYESRKARADTRKRVKGRFVKANKP 489
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4164682 4168282 + Bda005117.1 Bda11g00378 15486

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00378 489 MobiDBLite consensus disorder prediction 475 489 - -
Bda11g00378 489 Pfam CCT motif 444 486 IPR010402 GO:0005515
Bda11g00378 489 SMART bboxneu5 9 56 IPR000315 GO:0008270
Bda11g00378 489 SMART bboxneu5 57 99 IPR000315 GO:0008270
Bda11g00378 489 ProSiteProfiles CCT domain profile. 444 486 IPR010402 GO:0005515
Bda11g00378 489 ProSiteProfiles Zinc finger B-box type profile. 9 56 IPR000315 GO:0008270
Bda11g00378 489 Coils Coil 437 457 - -
Bda11g00378 489 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Bda11g00378 489 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 9 488 - -
Bda11g00378 489 CDD Bbox1_BBX-like 13 56 - -
Bda11g00378 489 MobiDBLite consensus disorder prediction 466 489 - -
Bda11g00378 489 MobiDBLite consensus disorder prediction 373 395 - -
Bda11g00378 489 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 14-RELATED 9 488 - -
Bda11g00378 489 Pfam B-box zinc finger 55 99 IPR000315 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00378 - - - zju:107435241 566.229
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda09g00945 Bda-Chr9:37465879 Bda11g00378 Bda-Chr11:4164682 1.75E-10 dispersed
Bda11g00378 Bda-Chr11:4164682 Bda14g00661 Bda-Chr14:4984289 3.46E-08 dispersed
Bda05g00326 Bda-Chr5:46749074 Bda11g00378 Bda-Chr11:4164682 8.70E-13 transposed
Bda10g01215 Bda-Chr10:46116991 Bda11g00378 Bda-Chr11:4164682 6.40E-11 transposed
Bda11g00378 Bda-Chr11:4164682 Bda13g00523 Bda-Chr13:6300531 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1326 . . . Bda11g00378 Bpe13g00823 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00287 . . Blo02g00202 . . Bda11g00378 Bpe14g00807 . . Bma06g01334 . . . . . . . . Cpe03g01212 . . . . . . . . . . . . . . . . Chy07g01493 Cme07g01930
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004278 2 0 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 1 2 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16582 PF00643 zf-B_box 2.00E-05 No_clan Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g00378 Bda_Chr11 FPKM 25.754484 28.398335 2.350726 2.795483 1.202291 1.066344 1.286329 35.629681 38.5317