Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00379 ATGATTCGTCAAACCGCTGCAGCCCTTAGAAGCTATTCCTCGGCTGCAAAGGAGATAACTGTGCGGGAGGCTTTGAACTCTTCCCTCGACGAGGAAATGTCTGCTGATCCTAAAGTCCTTTTAATGGGTGAAGAGGTGAGGAAGCATGATTTTAAATCTATATCAAAAGGGCTTTTGGAAAAATATGGTCCAGATAGGGTTCTTGATACCCCAATCACAGAGGCCGGGTTCACTGGCATTGCAGTCGGAGCTGCATTTTATGGACTTAAACCTATAGTCGAGTTTATGACCTTTAACTTCTCCATGCAGGCAATTGATCATATCATCAATTCTGCTGCTAAGACAAACTATATGTCCGCGGGAAAAATTCCTGTGCCTATTGTCTTTAGAGGACCTAATGGTGCTGCTGCCGGAGTTGGCGCACAACACTCTCAGTGTTATGCAGCCTGGTATGGTTCATGTCCTGGATTGAAAGTTTTGGCTCCATACTCGTCTGAAGATGCTCGTGGTTTGCTCAAAGCTGCCATAAGAGACCCAGATCCTGTTGTTTTCCTCGAAAATGAGTTGTTATATGGCGAGTCATTTCCGGTTTCGGCTGAAGCACTTGATTCCAGTTTCACCCTTCCAATCGGAAAAGCTAAGATTGAGAGAGAAGGAAAGGATGTGACTATTACAGCCTTCTCAAAAATGGTTGGATATGCACTTAAGGCAGCAGATATACTTGCTAAGGAAGGCATTAGCGCTGAGGTTATAAACTTGCGATCTATTAGACCTCTAGATCGACCAACGATTAACGATTCAGTTAGGAAGACAAGCAGATTGGTGACGGTCGAAGAAGGGTTCCCCCAGCATGGTGTTGGTGCTGAAATTTGCACGTCTGTGATTGAGGATAGCTTCGGCTATCTTGATGCCCCAGTCGAGAGAATTGCCGGTGCGGATGTTCCCATGCCTTATTCGGCTAATCTTGAGAGAATGGCCGTTCCCCAGGTGGATGATATTGTTCGGGCTGCAAAGAGGGCGTGTTACAGAGCTAAATGA 1038 45.86 MIRQTAAALRSYSSAAKEITVREALNSSLDEEMSADPKVLLMGEEVRKHDFKSISKGLLEKYGPDRVLDTPITEAGFTGIAVGAAFYGLKPIVEFMTFNFSMQAIDHIINSAAKTNYMSAGKIPVPIVFRGPNGAAAGVGAQHSQCYAAWYGSCPGLKVLAPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEALDSSFTLPIGKAKIEREGKDVTITAFSKMVGYALKAADILAKEGISAEVINLRSIRPLDRPTINDSVRKTSRLVTVEEGFPQHGVGAEICTSVIEDSFGYLDAPVERIAGADVPMPYSANLERMAVPQVDDIVRAAKRACYRAK 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4168734 4172097 - Bda005118.1 Bda11g00379 15487

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00379 345 Gene3D - 210 342 IPR009014 GO:0003824
Bda11g00379 345 Pfam Transketolase, pyrimidine binding domain 18 192 IPR005475 -
Bda11g00379 345 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 17 221 IPR029061 -
Bda11g00379 345 Pfam Transketolase, C-terminal domain 211 333 IPR033248 -
Bda11g00379 345 SUPERFAMILY TK C-terminal domain-like 206 340 IPR009014 GO:0003824
Bda11g00379 345 Gene3D - 18 209 - -
Bda11g00379 345 PANTHER DEHYDROGENASE RELATED 6 344 IPR027110 GO:0004739|GO:0006086
Bda11g00379 345 SMART Transket_pyr_3 19 193 IPR005475 -
Bda11g00379 345 CDD TPP_PYR_E1-PDHc-beta_like 23 188 - -
Bda11g00379 345 PANTHER PYRUVATE DEHYDROGENASE E1 COMPONENT SUBUNIT BETA, MITOCHONDRIAL 6 344 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00379 K00162 PDHB, pdhB; pyruvate dehydrogenase E1 component beta subunit [EC:1.2.4.1] - jre:118344962 605.905
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00934 Bda-Chr3:8295444 Bda11g00379 Bda-Chr11:4168734 0 dispersed
Bda07g00927 Bda-Chr7:10871270 Bda11g00379 Bda-Chr11:4168734 2.81E-81 dispersed
Bda08g00186 Bda-Chr8:1701053 Bda11g00379 Bda-Chr11:4168734 0 dispersed
Bda09g00344 Bda-Chr9:4389883 Bda11g00379 Bda-Chr11:4168734 1.38E-45 dispersed
Bda11g00379 Bda-Chr11:4168734 Bda13g00767 Bda-Chr13:9226371 1.78E-65 dispersed
Bda11g00379 Bda-Chr11:4168734 Bda13g00158 Bda-Chr13:2055029 6.18E-08 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1321 Blo01g00162 . . Bda11g00379 . . . . . . . . . . . . . . . . . . . . Cla06g00168 Cam06g0044 Cec06g0188 Cco06g0181 Clacu06g0183 Cmu06g0178 Cre06g0951 . . . . . . Chy11g01820 Cme11g02354 . Blo12g00290 . Bda11g00379 . . . . Sed07g0124 . . . . . . Cpe17g00933 . Bhi12g02405 Tan06g1460 . . . . . . . . . . . . Lsi09g01756 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003819 3 4 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 1 2 2 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g00379 Bda_Chr11 FPKM 0.411977 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0