Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00384 ATGGCTGAAGGCAAGCTCGATCTGCCTGACGATCTCCTGTCCTCTAGGCCCTCCGATCAATCTTGGACATCGAAAGGTGCCTCTGACTGTTCTGCTGAATTTGTTAGATTAATTTCGTTCATTTTTGATAGTGCAGATCAATCAGCATCCGAAAGCAGTATACCTTTATCACCCCAGTGGCTCTATGCCAAGCCGAGTGAAACTAAGATGGATATGCGTGCTCCTACGCCAGTTTCCCTGGCAAACTCTATTGATCCCAATCAGAAGGAGGGTTGGCGTCCAGATGGATCTGAAGACAAAAAAGATTGGAGGAGAATAACTGCTGACAATGAAATTAGTCGACGTTGGAGGGAAGAGGAAAGAGAAACTGGATTAGAAAGTAGATCCATACCCACTTCAGACCGTTGGCATGATGGTCGTAATGCAGGGCATGAAACTCGGCGTGACAACAAATGGTCATCAAGATGGGGTCCTGAGGACAAAGATAAGGAATCTCGGACTGAAAAGCGATTAGATGCAGACAAGGATGATAATCATAATGACGGACAATTGGTGGGTAGCATGCGATCAACTTCTGAACGTGAATCTGAGTCTCGTGATAAATGGAGGCCTCGCCACAGGATGGAAATTCATTCAAGCAGCTCTGCAAGTCACCGAGCTGCACCTGGATTTGGCCTCGAGAGAGGACGAGTGGAGGGTTTGAATGTAGGGTTTACTATTGGACGAGGAAGGGCAAATATCATAGGGAGATCATCTGCTGGCCTGATCGGTGCCCCTCACTTGGATAATAGTGAACACACCCTTCGGAAATTGAAATATTCAGTTCTCACATTTCGCTATCCTAGGGGTAAGATTCTTGATATTTATCGAAGCCAAAAACTTAATTCCATCTTTCGCTGCCATGCCAGACGAGATGGAAGATTCAGATGCCATACTCAGTCAGGTGTTCTGGAACCTCTGGCATTTATTGTGCCAAGTGATGTGGAAGAGGCTGCTCTAAGTGATATTTGGAAAGGAAAGATAAACAGTAGCGGGGTGGTCTATGACTCATATCGAAAGGATAAATCCCGTGAGCATGATGGGGATGTGGACTCTATCGAGGGAAATTCAGGAATTCTACCTTCATATTTAACAACTGAAAATACTACTGAAGAAAGAAAAGTTCTACCTTCAACTCTCTGCGAAGAGATTGCTGGCTCCCTTCAAGAAGTTGCAATTGGTTATGCATATAATGCCATTGACAAGAATACAAAGTGGAATTATGATTTATTTAGAAATTTAATGAAAGAAAGAAATACTCGAAATGAGGATCAACTTAAAGCACCAGTTACTTGGTCAGATTCTGATGGTTTGGTTACTATGAGTTCTAAAGGTAGTGTTGTTCAAAATGTATTGGAGATTGGTGGTGCTAGTCAAAGTGCTTCACAAGCCAGTGGTCGTGATGGTGGGCAAATGGAGAATTCTGGTTTCAAGTATAATCCAGTCAATGACAATGAGGTGGAAAATTCTTTGGGTGTCAATCTGAATCTTCCCGATGGTTCAAGTTCTCTCTTTCTAATGCCCTCCTTTGACCAGAATCAATTCAGTAGCTCCAATGCTGAAAATGTAGGAAAGGCAACCCCACCTGAGGAGTTGAGTTTGTACTACCTTGATCCTCATGGGATTATACAAGGGCCCTTCATAGGGGCAGATATTATCTTGTGGTATGAGCAGGGATTTTTTGGGACTGACCTTCCTGTCCGACTTTATGACGCACCTGAAGAGACACCTTTCCAAAGTTTAGGTGGATCTTCTAATGTTGCTGTATCAAATTCTACACTTGAGCAAACTGATGCCCCATTAAGGAATATGGAAGATAGTTTTGCTTCTCTCCCCATTCCAGAAGCTTCTGACTTATGTGCTGAGCTGAGCCTGCCATTGGCTGAGATCAATAAGTTCCCTCAACTCATTCCATCGAGAAAGTCCGAGCCTAAAGATCCACTGCAAGTACCACATACCAAGGGCCAAAGCTTTCATGATTTTATAGTGCTGGACGAAGGTTTACCAGGAAACGCTGACTATCCAGTTCCAAGGTCTTCTGGAGGGGTTCCTCTGGGAAATTTATCAAGTCAACCTTTCTCCAATCAAATTGCAGAGCCTGGTTTGGCAGGTCAGAATAATGGCAGGATGCACCCTTTTGGTTTGATGTGGTCTGAACTTGAAAGCACAAGTTCAAAGCATGTGAAACCATCTAATATACCAACCAGCGTGGGAAGGGTTGCTCCATTAGGTGCCATGGCTGATCCATCACCTTCCATGGAGGCGTGGTTTGATGGTTATAGAAAAAATTCATATTCTGACAACTTGTATCAAGACACGTCGTCCCGCCATTTGGGACGCGTGGAAAAAGAATCTAACGCTTTTGATTTACCAGACCAGCTTATTTCACACCAATATCACCAACAGCTAAATTTGTCATCTCCTCACGTAAATGAATCAGCTATTGATCATGCACGGCAGAATCGTATTCAGCAACAGTTGTTGTCTGAACATTCTGCCACGGATCTGGATCGTCTTTTAGCTATCCAACTACGACAGCAGCAACAGCAGCAACAGCTTCAATTGCAACAACATCATTTGCGACAACAACAGTTTCAGCAACAGCAGAAGTTATTGCAGGAGCAACAGCAAAAATTCTTGCAAGAGCAACAGCAGTCTCAAGTTCGACAAGTGCTGCTTGAACAGTTGCATGGCCAAATGCGCGATCCTGGCCCTGTGCAGTCACATTTTAATCAACTTGGAGCCAATAATGTTCTAGATCAGGTGATCTTAGAGCAGCAGCGTGTACATGACCTACAGCAATTGTCACAACGGAATTTAAGACATTCACCATCTTTTGAGCATTCTATTCACTCTAAATTTGGTCAGATGCGACAACAAGATCATCATAGAGATTTGTTGGAGCTAATATCTCGAGCACAACAAGGAAAAATGCAGTCAATGGAGCAACAAATGCTACAGCAAGAACAGATGCTTCAGCAAGAGCAGAGACTTCAACAAGAACAGATGCTTCAGCAAGAACAGATGCTTCAGCAAGAAAAGATGCTTCAGCAAGAACAGATGCTTCAGCAGGAACAGATGCTTCAGCAAGAACAGATGCTTCAGCAAGAACAGATGCAAGCGAGGTATTTGTCAATGGGGTTGAGACGAACCACTTTGGAAGACGAGAGGCATGTTGCTTCTATCTGGCCAGGTGAGGAGCCAGGTCAGCAGTTTATGTTGGCTGCAGCAGATCATGGGGGAACTGTAAACAATGTCCTTAGCAGGCATTCTTCTCTTGGATCTACTGGTAAGATAAGTTTATTTAAGGTGAAGCTATGTCTGACTGATTTAATTTGTTTCCCAACTCCTTACAGGTTAAATATGCTTTCCAAAGATACTGTTTTGTTGAGGCGGCCTCCCGTCTCTCGTGCTATGTCATCGCATGAAGGATTATCGGAGCTAGTTTCTGATTCTATCAGAGGGCACAGTATGTCCAATGGCCCTGCGGATGGAGCAAGATCAAGCCATAGTACAGATGTGTCGGTAATGTCCGGAAAGAAGGAGATGAGATTTCGACGGACATCATCAGGAAGCGAAGCAGACGTGTCAGAGGCATCGTTTATCGACATGCTGAAGAAGACTGCAGCCCCTGAAGCACACTCGGCTGCAGCCATTCCCGAGCCAGCAGATGGATCACAAGGGGGGAAAGGGGGGAAGAAGAAAGGAAAGAAGGGGCGGCAAATCGACCCGGCTTTGCTTGGCTTCAAAGTCACAAGCAATCGAATAATGATGGGCGAAATACAGCATGTAGAGGATTGA 3840 44.43 MAEGKLDLPDDLLSSRPSDQSWTSKGASDCSAEFVRLISFIFDSADQSASESSIPLSPQWLYAKPSETKMDMRAPTPVSLANSIDPNQKEGWRPDGSEDKKDWRRITADNEISRRWREEERETGLESRSIPTSDRWHDGRNAGHETRRDNKWSSRWGPEDKDKESRTEKRLDADKDDNHNDGQLVGSMRSTSERESESRDKWRPRHRMEIHSSSSASHRAAPGFGLERGRVEGLNVGFTIGRGRANIIGRSSAGLIGAPHLDNSEHTLRKLKYSVLTFRYPRGKILDIYRSQKLNSIFRCHARRDGRFRCHTQSGVLEPLAFIVPSDVEEAALSDIWKGKINSSGVVYDSYRKDKSREHDGDVDSIEGNSGILPSYLTTENTTEERKVLPSTLCEEIAGSLQEVAIGYAYNAIDKNTKWNYDLFRNLMKERNTRNEDQLKAPVTWSDSDGLVTMSSKGSVVQNVLEIGGASQSASQASGRDGGQMENSGFKYNPVNDNEVENSLGVNLNLPDGSSSLFLMPSFDQNQFSSSNAENVGKATPPEELSLYYLDPHGIIQGPFIGADIILWYEQGFFGTDLPVRLYDAPEETPFQSLGGSSNVAVSNSTLEQTDAPLRNMEDSFASLPIPEASDLCAELSLPLAEINKFPQLIPSRKSEPKDPLQVPHTKGQSFHDFIVLDEGLPGNADYPVPRSSGGVPLGNLSSQPFSNQIAEPGLAGQNNGRMHPFGLMWSELESTSSKHVKPSNIPTSVGRVAPLGAMADPSPSMEAWFDGYRKNSYSDNLYQDTSSRHLGRVEKESNAFDLPDQLISHQYHQQLNLSSPHVNESAIDHARQNRIQQQLLSEHSATDLDRLLAIQLRQQQQQQQLQLQQHHLRQQQFQQQQKLLQEQQQKFLQEQQQSQVRQVLLEQLHGQMRDPGPVQSHFNQLGANNVLDQVILEQQRVHDLQQLSQRNLRHSPSFEHSIHSKFGQMRQQDHHRDLLELISRAQQGKMQSMEQQMLQQEQMLQQEQRLQQEQMLQQEQMLQQEKMLQQEQMLQQEQMLQQEQMLQQEQMQARYLSMGLRRTTLEDERHVASIWPGEEPGQQFMLAAADHGGTVNNVLSRHSSLGSTGKISLFKVKLCLTDLICFPTPYRLNMLSKDTVLLRRPPVSRAMSSHEGLSELVSDSIRGHSMSNGPADGARSSHSTDVSVMSGKKEMRFRRTSSGSEADVSEASFIDMLKKTAAPEAHSAAAIPEPADGSQGGKGGKKKGKKGRQIDPALLGFKVTSNRIMMGEIQHVED 1279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4190887 4199495 + Bda005123.1 Bda11g00384 15492

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00384 1279 Coils Coil 991 1014 - -
Bda11g00384 1279 SUPERFAMILY GYF domain 539 593 IPR035445 -
Bda11g00384 1279 Pfam GYF domain 548 594 IPR003169 GO:0005515
Bda11g00384 1279 PANTHER GYF DOMAIN-CONTAINING PROTEIN 1084 1279 - -
Bda11g00384 1279 Coils Coil 878 898 - -
Bda11g00384 1279 PANTHER GYF DOMAIN-CONTAINING PROTEIN 1084 1279 - -
Bda11g00384 1279 PANTHER GYF DOMAIN-CONTAINING PROTEIN 1 1006 - -
Bda11g00384 1279 SMART gyf_5 545 600 IPR003169 GO:0005515
Bda11g00384 1279 MobiDBLite consensus disorder prediction 1166 1205 - -
Bda11g00384 1279 MobiDBLite consensus disorder prediction 1225 1258 - -
Bda11g00384 1279 MobiDBLite consensus disorder prediction 1 28 - -
Bda11g00384 1279 MobiDBLite consensus disorder prediction 1190 1204 - -
Bda11g00384 1279 MobiDBLite consensus disorder prediction 72 222 - -
Bda11g00384 1279 PANTHER GYF DOMAIN-CONTAINING PROTEIN 1 1006 - -
Bda11g00384 1279 MobiDBLite consensus disorder prediction 91 182 - -
Bda11g00384 1279 ProSiteProfiles GYF domain profile. 544 595 IPR003169 GO:0005515
Bda11g00384 1279 MobiDBLite consensus disorder prediction 192 213 - -
Bda11g00384 1279 MobiDBLite consensus disorder prediction 1166 1189 - -
Bda11g00384 1279 PANTHER GYF DOMAIN-CONTAINING PROTEIN 1043 1084 - -
Bda11g00384 1279 Gene3D - 531 621 IPR035445 -
Bda11g00384 1279 PANTHER GYF DOMAIN-CONTAINING PROTEIN 1043 1084 - -
Bda11g00384 1279 MobiDBLite consensus disorder prediction 14 28 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00384 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein - jre:108984363 810.446
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g00384 Bda-Chr11:4190887 Bda13g00527 Bda-Chr13:6324077 1.79E-57 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1305 . . . Bda11g00384 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy11g01812 Cme11g02345 . . . Bda11g00384 . . . Bma06g01339 Sed09g0359 . . . . . . Cpe17g00925 . Bhi12g02417 Tan06g1477 Cmetu11g1068 . . . . . . . . . . . Lsi09g01748 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003820 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 2 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g00384 Bda_Chr11 FPKM 6.62676 6.553649 4.54871 6.069935 4.849779 4.10006 4.745166 2.255335 2.337506