Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00398 ATGCTAGTTCTTAGCTCTTCCGATTCGCGATTTCAACATTCCATTCTCATTCTTTTCTCTCTCTACTTTCTGATTTTTCTCTCATGGGTTTTCTCCTTGCAGCTCTATGGCGAACACTGGGAAATGGGTTTTTCAGAGCAGGGATTATTAGCCAACACTGAACAAGACGAAGATATATTTTCATCTGGGTTGGAAAATAGAATGCCGTTTTTGCAGATGTTACAGGAAGCTCCGCCATTGTTACCCTTTAAAGAGCTCGGATTTCAAACTTTGCTGAAATTGCAGCATTTCAGGGATCCATGGGAGGTCGACGAGCTGAAAATGGGAGAAAAAATTCAAACTTTCGAACTAGAAAGCTGTGTAACCCACGATTTGATGGACTTGCATTCCCCCAATAAATCAGAGAGCAATCAAATCGGATGGAACGAAGAGAAAAATTGTTTGAGAGAAGGAAGAACCAGTTCGAAGCAGACCCAGTTGGGGAAATCTGCAGTTCTAGTGAGAGAAAGAAGAAAGAGAAAGAGAGCGAAGCCATTGAAGAACAAGGAAGAAGTAGAGAGCCAAAGAATGACCCACATTGCAGTTGAGAGAAACCGGAGACGACAAATGAACGATCATCTCAACGTTCTTCGCTCTCTAATGCCGTCTTCTTACATTCAAAGAGGTGATCAAGCGTCAATCATCGGAGGAGCGATAAACTTCGTGAAAGAACTCGAACAACTCCTCCATTCTCTCGAGTCGCATCGAAGAACAAGAAACCCAGAAGGAAGCAGCTCTGCGAAAAACCAGTCTTCAGCTTCGTCCTCTTCCTCCGCCATAGCAATGGCTTCCAACGGCTTCTTCATAATCGGAGACGGAGTAACCGCAGAAAACAAATCGGAAACGGCAGATATTGAAGTGACAGTGATTCAAACCCACGTAAACTTGAAAATTCAGTGCGAGAGAAGGCCGAGACAGTTGGTGAAAGCCATTGTTGCACTCGAAGAGCTTAAGCTCACTGTTCTTCACCTCAACGTCACCACCTCACAATCTACAGTTCTTTATTCCTTCAATCTCAAGATAGAAGATGAGTGTAAACTAAGGTCAGCGGACGAGATAGCAGGATCAGTCCATCAAATTTTCAGCTACATCGACGGTAGATAA 1143 43.66 MLVLSSSDSRFQHSILILFSLYFLIFLSWVFSLQLYGEHWEMGFSEQGLLANTEQDEDIFSSGLENRMPFLQMLQEAPPLLPFKELGFQTLLKLQHFRDPWEVDELKMGEKIQTFELESCVTHDLMDLHSPNKSESNQIGWNEEKNCLREGRTSSKQTQLGKSAVLVRERRKRKRAKPLKNKEEVESQRMTHIAVERNRRRQMNDHLNVLRSLMPSSYIQRGDQASIIGGAINFVKELEQLLHSLESHRRTRNPEGSSSAKNQSSASSSSSAIAMASNGFFIIGDGVTAENKSETADIEVTVIQTHVNLKIQCERRPRQLVKAIVALEELKLTVLHLNVTTSQSTVLYSFNLKIEDECKLRSADEIAGSVHQIFSYIDGR 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4316949 4318378 + Bda005139.2 Bda11g00398 15506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00398 380 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 187 238 IPR011598 GO:0046983
Bda11g00398 380 Gene3D - 178 267 IPR036638 GO:0046983
Bda11g00398 380 PANTHER TRANSCRIPTION FACTOR BHLH70 43 379 - -
Bda11g00398 380 SMART finulus 193 244 IPR011598 GO:0046983
Bda11g00398 380 MobiDBLite consensus disorder prediction 248 269 - -
Bda11g00398 380 CDD bHLH_AtFAMA_like 190 252 - -
Bda11g00398 380 Pfam Helix-loop-helix DNA-binding domain 188 239 IPR011598 GO:0046983
Bda11g00398 380 PANTHER MAX DIMERIZATION, MAD 43 379 - -
Bda11g00398 380 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 187 253 IPR036638 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda11g00398 Bda13g00490 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g01246 Bda-Chr7:15306859 Bda11g00398 Bda-Chr11:4316949 1.57E-59 dispersed
Bda08g00632 Bda-Chr8:6507919 Bda11g00398 Bda-Chr11:4316949 3.04E-55 dispersed
Bda11g00398 Bda-Chr11:4316949 Bda11g00562 Bda-Chr11:5822685 2.94E-40 dispersed
Bda13g00490 Bda-Chr13:5769953 Bda11g00398 Bda-Chr11:4316949 6.97E-61 transposed
Bda11g00398 Bda-Chr11:4316949 Bda13g00549 Bda-Chr13:6468389 2.90E-176 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16585 PF00010 HLH 4.70E-10 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00398 - - qsu:112008533 367.466