Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda11g00402 | ATGGATTTTTTGCAGAAAGAAAAAGAAGGAATCGCACAAAACCTTTTCGTTCAGCTTCAACAAATAAAACCCACTATTTTCCAGGAAAAGTTACAGATTCAAGACCCCTATACGAATATTTGTAATTTCAGCTTCCAAGGTCACAACAATGGCGGTTGTAGAGGAGAGAGAAATGAGCCAAGAGAGAGGGAGCTTCTGTTCGAGAAAATCGTGACTCCAAGCGATGTAGGAAAGCTAAACAGGCTGGTGATTCCAAAACAATTTGCAGAAAAATACTTTCCGTTAGACTCTTCGATGAACGAGAAAGGTCTTTTTCTGAGCTTCGAAGACCGAAACGGACAACAATGGAGGTTCCGCTACTCTTACTGGAAAAGCAGCCAGAGCTTCGTCATGACAAGGGGCTGGAGTCGCTTTGTAAAAGATAAAAAACTCCACGCTGGAGATGTAGTTTCTTTCGAACGTTATGCTGCAGATATGGGGAAAAATAGCTTCCATTTTCGGATAGATTGGAAGCATCGTTCTGATATAGTTCTTCGTCAAAGAGACATCCATTTTAATGGAAAATCACTAAAGTTCAATCTCCCCAATCTCGGGTTTGATTCGTTTCATAATTTAAACCCTCTGTCGGCGAGCTCTCAGAGATTCACGGCGGTAACGAACCCTGTCACTCCAATCCGCCATTGTAAAAGCAGTGAAGCTAAACCTAAACGATTGAGACTATTTGGAGTAAACCTGGACTGCCCAGAAGAGCCAAAACGACACACTTATTCTCGTTTTGAGTCTTCTTCTACTCTCTCTTCCAATGAAACTCCATTGTTGCAGACTGAAACTCAGTTTTCCAGTAGAGGAAAAGCTTCAGCTTTCTTCCCATTTCACTGGAATCCATAG | 888 | 41.89 | MDFLQKEKEGIAQNLFVQLQQIKPTIFQEKLQIQDPYTNICNFSFQGHNNGGCRGERNEPRERELLFEKIVTPSDVGKLNRLVIPKQFAEKYFPLDSSMNEKGLFLSFEDRNGQQWRFRYSYWKSSQSFVMTRGWSRFVKDKKLHAGDVVSFERYAADMGKNSFHFRIDWKHRSDIVLRQRDIHFNGKSLKFNLPNLGFDSFHNLNPLSASSQRFTAVTNPVTPIRHCKSSEAKPKRLRLFGVNLDCPEEPKRHTYSRFESSSTLSSNETPLLQTETQFSSRGKASAFFPFHWNP | 295 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 4346008 | 4346895 | + | Bda005144.1 | Bda11g00402 | 15510 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda11g00402 | 295 | CDD | B3_DNA | 66 | 168 | IPR003340 | GO:0003677 | |
Bda11g00402 | 295 | SUPERFAMILY | DNA-binding pseudobarrel domain | 64 | 176 | IPR015300 | - | |
Bda11g00402 | 295 | Gene3D | - | 61 | 184 | IPR015300 | - | |
Bda11g00402 | 295 | ProSiteProfiles | B3 DNA-binding domain profile. | 67 | 172 | IPR003340 | GO:0003677 | |
Bda11g00402 | 295 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 | 54 | 274 | - | - | |
Bda11g00402 | 295 | MobiDBLite | consensus disorder prediction | 258 | 279 | - | - | |
Bda11g00402 | 295 | SMART | B3_2 | 67 | 174 | IPR003340 | GO:0003677 | |
Bda11g00402 | 295 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 | 54 | 274 | IPR044800 | GO:0003700 | |
Bda11g00402 | 295 | Pfam | B3 DNA binding domain | 67 | 162 | IPR003340 | GO:0003677 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bda08g00078 | Bda11g00402 | CCT | |
Bda03g01027 | Bda11g00402 | CCT | |
Bda08g00078 | Bda11g00402 | ECH | |
Bda03g01027 | Bda11g00402 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda07g01526 | Bda-Chr7:28386869 | Bda11g00402 | Bda-Chr11:4346008 | 7.46E-42 | dispersed | |
Bda08g00078 | Bda-Chr8:721686 | Bda11g00402 | Bda-Chr11:4346008 | 2.48E-56 | dispersed | |
Bda10g01143 | Bda-Chr10:45485378 | Bda11g00402 | Bda-Chr11:4346008 | 1.03E-43 | dispersed | |
Bda11g00402 | Bda-Chr11:4346008 | Bda03g01027 | Bda-Chr3:9739224 | 1.87E-64 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
16587 | PF02362 | B3 | 2.20E-28 | CL0405 | Bda | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda11g00402 | - | - | cpap:110816522 | 196.052 |