Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00402 ATGGATTTTTTGCAGAAAGAAAAAGAAGGAATCGCACAAAACCTTTTCGTTCAGCTTCAACAAATAAAACCCACTATTTTCCAGGAAAAGTTACAGATTCAAGACCCCTATACGAATATTTGTAATTTCAGCTTCCAAGGTCACAACAATGGCGGTTGTAGAGGAGAGAGAAATGAGCCAAGAGAGAGGGAGCTTCTGTTCGAGAAAATCGTGACTCCAAGCGATGTAGGAAAGCTAAACAGGCTGGTGATTCCAAAACAATTTGCAGAAAAATACTTTCCGTTAGACTCTTCGATGAACGAGAAAGGTCTTTTTCTGAGCTTCGAAGACCGAAACGGACAACAATGGAGGTTCCGCTACTCTTACTGGAAAAGCAGCCAGAGCTTCGTCATGACAAGGGGCTGGAGTCGCTTTGTAAAAGATAAAAAACTCCACGCTGGAGATGTAGTTTCTTTCGAACGTTATGCTGCAGATATGGGGAAAAATAGCTTCCATTTTCGGATAGATTGGAAGCATCGTTCTGATATAGTTCTTCGTCAAAGAGACATCCATTTTAATGGAAAATCACTAAAGTTCAATCTCCCCAATCTCGGGTTTGATTCGTTTCATAATTTAAACCCTCTGTCGGCGAGCTCTCAGAGATTCACGGCGGTAACGAACCCTGTCACTCCAATCCGCCATTGTAAAAGCAGTGAAGCTAAACCTAAACGATTGAGACTATTTGGAGTAAACCTGGACTGCCCAGAAGAGCCAAAACGACACACTTATTCTCGTTTTGAGTCTTCTTCTACTCTCTCTTCCAATGAAACTCCATTGTTGCAGACTGAAACTCAGTTTTCCAGTAGAGGAAAAGCTTCAGCTTTCTTCCCATTTCACTGGAATCCATAG 888 41.89 MDFLQKEKEGIAQNLFVQLQQIKPTIFQEKLQIQDPYTNICNFSFQGHNNGGCRGERNEPRERELLFEKIVTPSDVGKLNRLVIPKQFAEKYFPLDSSMNEKGLFLSFEDRNGQQWRFRYSYWKSSQSFVMTRGWSRFVKDKKLHAGDVVSFERYAADMGKNSFHFRIDWKHRSDIVLRQRDIHFNGKSLKFNLPNLGFDSFHNLNPLSASSQRFTAVTNPVTPIRHCKSSEAKPKRLRLFGVNLDCPEEPKRHTYSRFESSSTLSSNETPLLQTETQFSSRGKASAFFPFHWNP 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4346008 4346895 + Bda005144.1 Bda11g00402 15510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00402 295 CDD B3_DNA 66 168 IPR003340 GO:0003677
Bda11g00402 295 SUPERFAMILY DNA-binding pseudobarrel domain 64 176 IPR015300 -
Bda11g00402 295 Gene3D - 61 184 IPR015300 -
Bda11g00402 295 ProSiteProfiles B3 DNA-binding domain profile. 67 172 IPR003340 GO:0003677
Bda11g00402 295 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 54 274 - -
Bda11g00402 295 MobiDBLite consensus disorder prediction 258 279 - -
Bda11g00402 295 SMART B3_2 67 174 IPR003340 GO:0003677
Bda11g00402 295 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 54 274 IPR044800 GO:0003700
Bda11g00402 295 Pfam B3 DNA binding domain 67 162 IPR003340 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda08g00078 Bda11g00402 CCT
Bda03g01027 Bda11g00402 CCT
Bda08g00078 Bda11g00402 ECH
Bda03g01027 Bda11g00402 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g01526 Bda-Chr7:28386869 Bda11g00402 Bda-Chr11:4346008 7.46E-42 dispersed
Bda08g00078 Bda-Chr8:721686 Bda11g00402 Bda-Chr11:4346008 2.48E-56 dispersed
Bda10g01143 Bda-Chr10:45485378 Bda11g00402 Bda-Chr11:4346008 1.03E-43 dispersed
Bda11g00402 Bda-Chr11:4346008 Bda03g01027 Bda-Chr3:9739224 1.87E-64 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16587 PF02362 B3 2.20E-28 CL0405 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00402 - - cpap:110816522 196.052