Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00423 ATGTCTCTTTTCTCTCATTTCTTTTTCAAATTTGTGCTTCTTGTGTCGGTTTCGCTTTCCCCTTGTTTTTGCTTCAACCCGAAGTACATCTTCAATGTCTCTGAATCTCAACCCACCAACGGTTGGTCGTCTGCTGGAGCAACGTGGTATGGAGGAGCCACAGGTGCTGGGAGCGATGGAGGTGCTTGTGGGTATAAAACAGCAGTATGGCAACATCCATTTTCTTCATTTATAGCAGCTGGAGGGCCGTCGCTGTTCAAATCAGGACAAGGATGTGGAGCTTGTTATCAGGTGATGTGCACGCAAAATTCAGCTTGCTCCGGCAGTCCGGTGACTGTGGTTATCACCGATAGTTGTCCAGGCGGTGTTTGTGCTTCTGATGCCGTCCATTTTGATTTGAGCGGCACTGCCTTCGGGGCTATGGCTAAATCTGGACAAGAAGATCAACTCCGGGCGGCTGGAAATCTTCAAGTTCAATACCAAAGGGTCCAGTGCAGTTATCCCGGCACCCCTCTCACCTTCTCCGTAGATGCAGGCTCGAATTCGAACTACCTTGAAACCCTAATTGAGTATCAATGGGGAGATGGTGATCTTTCTTCCGTAGAAATCAAGCAAGGAGGAGAGTCAAACCCGTGGTCTAAAATGCAACATTCTTGGGGTGCTCTATGGCAATTCAATAGCGGGTCGGCTTTACAGGCCCCGTTTTCTTTCCGACTAACCTCGTTGGAGTCCGGTCAGTCAATCGTCGCCAACAATGTCATTCCGGTCGGTTGGAAGCCTGGCCAAACTTATACATCAAGCTAA 804 48.88 MSLFSHFFFKFVLLVSVSLSPCFCFNPKYIFNVSESQPTNGWSSAGATWYGGATGAGSDGGACGYKTAVWQHPFSSFIAAGGPSLFKSGQGCGACYQVMCTQNSACSGSPVTVVITDSCPGGVCASDAVHFDLSGTAFGAMAKSGQEDQLRAAGNLQVQYQRVQCSYPGTPLTFSVDAGSNSNYLETLIEYQWGDGDLSSVEIKQGGESNPWSKMQHSWGALWQFNSGSALQAPFSFRLTSLESGQSIVANNVIPVGWKPGQTYTSS 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4504147 4505495 + Bda005167.1 Bda11g00423 15531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00423 267 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 60 170 IPR007112 -
Bda11g00423 267 PRINTS Expansin/Lol pI family signature 252 266 IPR007118 GO:0005576
Bda11g00423 267 PRINTS Expansin/Lol pI family signature 59 77 IPR007118 GO:0005576
Bda11g00423 267 PRINTS Expansin/Lol pI family signature 153 169 IPR007118 GO:0005576
Bda11g00423 267 PRINTS Expansin/Lol pI family signature 41 56 IPR007118 GO:0005576
Bda11g00423 267 PRINTS Expansin/Lol pI family signature 212 226 IPR007118 GO:0005576
Bda11g00423 267 PRINTS Expansin/Lol pI family signature 82 100 IPR007118 GO:0005576
Bda11g00423 267 SUPERFAMILY PHL pollen allergen 171 266 IPR036749 -
Bda11g00423 267 Gene3D - 166 267 IPR036749 -
Bda11g00423 267 PRINTS Major pollen allergen Lol pI signature 120 135 IPR005795 GO:0005576|GO:0019953
Bda11g00423 267 PRINTS Major pollen allergen Lol pI signature 80 91 IPR005795 GO:0005576|GO:0019953
Bda11g00423 267 PRINTS Major pollen allergen Lol pI signature 190 205 IPR005795 GO:0005576|GO:0019953
Bda11g00423 267 PRINTS Major pollen allergen Lol pI signature 142 157 IPR005795 GO:0005576|GO:0019953
Bda11g00423 267 PRINTS Major pollen allergen Lol pI signature 174 189 IPR005795 GO:0005576|GO:0019953
Bda11g00423 267 PRINTS Major pollen allergen Lol pI signature 242 259 IPR005795 GO:0005576|GO:0019953
Bda11g00423 267 PANTHER EXPANSIN-B3 8 266 - -
Bda11g00423 267 Pfam Expansin C-terminal domain 173 255 IPR007117 -
Bda11g00423 267 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 183 266 IPR007117 -
Bda11g00423 267 SMART dpbb_1 78 160 IPR007112 -
Bda11g00423 267 SUPERFAMILY Barwin-like endoglucanases 37 169 IPR036908 -
Bda11g00423 267 Gene3D - 30 165 IPR036908 -
Bda11g00423 267 Pfam Lytic transglycolase 79 160 IPR009009 -
Bda11g00423 267 PANTHER EXPANSIN-B2-RELATED 8 266 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g00423 Bda-Chr11:4504147 Bda11g00425 Bda-Chr11:4511861 3.72E-116 dispersed
Bda14g00639 Bda-Chr14:4786850 Bda11g00423 Bda-Chr11:4504147 4.04E-30 dispersed
Bda11g00423 Bda-Chr11:4504147 Bda11g00424 Bda-Chr11:4507453 5.56E-161 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00423 - - qsu:112000124 345.125