Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00424 ATGGCTCTTTTCTCTCATTTCTTCTTCAAATTGGTGCTTCTTGTCTCGGTTTCGCTTTCCCCTTGTTTTTGCTTCAACGGCTTCGAATCTCAAGCCACCAACGGTTGGTCGTCGGCCATAGCAACGTGGTATGGAAGCGCCAATGGTGCCGGGAGTGATGGGGGTGCTTGTGGGTATAAAACAGCAGTATGGCAACGTCCATTTTCTTCATTTATAGCAGCTGGAGGGCCATCACTGTTCAAATCAGGACAAGGATGTGGAGCTTGTTATCAGGTGATGTGCACGCAGAATGGGGCTTGCTCCGGCAGTCCGGTGACGGTGGTTATCACCGATAGTTGTCCAGGCGGTGTTTGTGCTTCTGATGCCGTCCATTTTGACTTGAGTGGCACTGCCTTTGGAGCCATGGCTAAGTCTGGACAACAAGATCAACTTCGTTCTGCAGGAAGTCTTCAAATTCAATACCAAAGGGTCCAGTGCAGTTATCCCGGCACCCCTCTCACTTTCTCTGTAGATTCGGGCTCGAATTCAAACTACTTCGCAACCCTAATTGAGTATCAATGGGGAGATGGGGATCTTTCTTTAGTAGAAATCAAGCAAGGCGGAGGCTCAAACTGGTGGGCTAAAATGCAACATTCTTGGGGTGCTGTTTGGCAATTCAATAGCGGGTCGACTTTACAAGCCCCATTTTCTCTCCGACTAACCTCGTTGTCGGGTCAATCGATCGTCGCCAACAATGTCATTCCGGTCGGTTGGAAACCTGGCCAAACTTATAGATCAAGCTAA 783 48.91 MALFSHFFFKLVLLVSVSLSPCFCFNGFESQATNGWSSAIATWYGSANGAGSDGGACGYKTAVWQRPFSSFIAAGGPSLFKSGQGCGACYQVMCTQNGACSGSPVTVVITDSCPGGVCASDAVHFDLSGTAFGAMAKSGQQDQLRSAGSLQIQYQRVQCSYPGTPLTFSVDSGSNSNYFATLIEYQWGDGDLSLVEIKQGGGSNWWAKMQHSWGAVWQFNSGSTLQAPFSLRLTSLSGQSIVANNVIPVGWKPGQTYRSS 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4507453 4508827 + Bda005168.1 Bda11g00424 15532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00424 260 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 54 164 IPR007112 -
Bda11g00424 260 PRINTS Major pollen allergen Lol pI signature 235 252 IPR005795 GO:0005576|GO:0019953
Bda11g00424 260 PRINTS Major pollen allergen Lol pI signature 74 85 IPR005795 GO:0005576|GO:0019953
Bda11g00424 260 PRINTS Major pollen allergen Lol pI signature 215 232 IPR005795 GO:0005576|GO:0019953
Bda11g00424 260 PRINTS Major pollen allergen Lol pI signature 136 151 IPR005795 GO:0005576|GO:0019953
Bda11g00424 260 PRINTS Major pollen allergen Lol pI signature 168 183 IPR005795 GO:0005576|GO:0019953
Bda11g00424 260 PRINTS Major pollen allergen Lol pI signature 184 199 IPR005795 GO:0005576|GO:0019953
Bda11g00424 260 PRINTS Major pollen allergen Lol pI signature 114 129 IPR005795 GO:0005576|GO:0019953
Bda11g00424 260 SUPERFAMILY Barwin-like endoglucanases 31 163 IPR036908 -
Bda11g00424 260 SUPERFAMILY PHL pollen allergen 165 259 IPR036749 -
Bda11g00424 260 Gene3D - 25 159 IPR036908 -
Bda11g00424 260 Gene3D - 160 260 IPR036749 -
Bda11g00424 260 SMART dpbb_1 72 154 IPR007112 -
Bda11g00424 260 PANTHER EXPANSIN-B2-RELATED 8 259 - -
Bda11g00424 260 Pfam Lytic transglycolase 73 154 IPR009009 -
Bda11g00424 260 Pfam Expansin C-terminal domain 167 248 IPR007117 -
Bda11g00424 260 PRINTS Expansin/Lol pI family signature 245 259 IPR007118 GO:0005576
Bda11g00424 260 PRINTS Expansin/Lol pI family signature 35 50 IPR007118 GO:0005576
Bda11g00424 260 PRINTS Expansin/Lol pI family signature 53 71 IPR007118 GO:0005576
Bda11g00424 260 PRINTS Expansin/Lol pI family signature 76 94 IPR007118 GO:0005576
Bda11g00424 260 PRINTS Expansin/Lol pI family signature 147 163 IPR007118 GO:0005576
Bda11g00424 260 PRINTS Expansin/Lol pI family signature 206 220 IPR007118 GO:0005576
Bda11g00424 260 PANTHER EXPANSIN-B3 8 259 - -
Bda11g00424 260 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 177 259 IPR007117 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g01790 Bda-Chr7:33827970 Bda11g00424 Bda-Chr11:4507453 8.82E-77 dispersed
Bda11g00424 Bda-Chr11:4507453 Bda15g00905 Bda-Chr15:14858691 2.87E-70 dispersed
Bda11g00423 Bda-Chr11:4504147 Bda11g00424 Bda-Chr11:4507453 5.56E-161 tandem
Bda11g00424 Bda-Chr11:4507453 Bda11g00425 Bda-Chr11:4511861 5.48E-114 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00424 - - qsu:112000124 347.051