Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00439 ATGAAGCACTTCATGCAGCCAAGAAACGCGATCTTGAAGGAAACGCAGTCGCCTGAGCTGTCTTCTTCGCCTATTTCTGGTCTGTTTTCCAAATCAAAACCTCCTCGGAAGCAGAGATCTTCCAAGGAGAATGCGCCGCCGTCGGATCTGAACTCAATGGCAGCGGATTCGAAACCCTCGCCTGCAACAGCAGCTAAGTTGAAGAGCCCGTTGCCTCCGAGGCCACCGTCTTCAAATCCCCTTAAGCGTAAGCTAATCATGGAGTCCGTGCCTGAGAATTCCAATTCTGGGCTTTCAGATTCTGGAGTGAAGGTTGTAGTGCGAATGAGGCCACCCTGCCAAGACAGGGATGAAGGCGAGGTTATAGTCGAAAAACTTTCTGATGATTCTTTGTCAATTAATGGGCAAACCTTTAATTTTGATGCTGTTTCTGATACAGAAGCCACACAGCTTGATATTTTTGAGCTTGTAGGAGCACCTCTTGTTGAAAACTGTATGTCAGGTTTCAACAGTTCTGTTTTTGCTTATGGGCAGACTGGAAGTGGAAAGACGTACACAATGTGGGGTCCTGCTAATGCTTTATCTGATGAAAATTCACTTAGCCATCAACAAGGCTTAACTCCCCGTGTGTTTGAACATCTACTTGCTCGCATAAGTGAAGAGCAAATCAAGCACGCTGACAAACAACTAAAGTATCAATGTCATTGCTCTTTTCTCGAGATTTACAACGAACAAATCACTGATTTATTGGATCCAAACAGAAAAAACCTTCAGATTAGAGAAGATGTTAAATCTGGTGTATATGTTGAAAATCTATCAGAAGAGTGTGTGTGTACTATGGCGGATGTTACTCAGCTGCTAATAAAGGGCTTATCAAACAGAAGAACTGGTGCAACTAGTATAAATTCAGAAAGTTCACGCTCGCATACAGTTTTTACTTGTGTTGTTGAATCTCGATGCAAGATCGTGGCAGATGGTTTAAGCAGCTTTAAAACAAGCAGAATTAATCTTGTTGATCTAGCTGGATCAGAAAGACAAAAGCTAACTGGTGCAGCAGGAGAGCGTCTGAAGGAGGCAGGAAATATCAACCGCTCTCTTTCACAACTTGGAAATTTGATCAACATCCTTGCTGAGATCTCCCATACTGGGAAGCAAAGGCATATCCCTTATAGAGACTCCAGGTTGACTTTTTTATTACAAGAATCTCTTGGGGGAAATGCAAAATTAGCGATGATCTGTTCCATTTCTCCTGCTCAAAGCTGCAAGAGTGAAACATTTAGTACTCTTAGATTTGCCCAACGTGCCAAGTCTATAAAAAACAAGGCAGTTGTTAATGAAGTAATGCAAGATGATGTAAAACACTTGCGTGAAGTAATACGGCAGCTAAAGGATGAACTGCATCGGATAAAAGAAAACGGATACAACCCAAATGTTACTAATGGAGGTCACTCTACAGCATGGCTTCGTAGAAGTCTAAGTCTACTAAAGTCCAGTTTGCATCATCCTGTTACATTACCCCATTTAGATGATGACAGTGATGAGGAGATGGAAATTGATGAGGAAGCAGTAGAGAAACTTTGTGTTGAACTGGGTAACCAATCAGCTGGTTGTGGGAGTGTTAATTTGAGAAATAGTGATACTTCTGATTTAAAATCAGCTACAGCATCAGAAGTTTTGCGCTTTAGTAAGTCACTGCCCTCCATGTCATGCCTTGAATGTGCTGTGGAAGATTGTTGTGATGTGGACGTAAAAATGGAGGTTGAAACATCTATGAAAGATGAGGTTATAACTGACAGTCTTACAATAATCGACCAAAAAACTCCAGATTCCCAAGCTAATTCGTCAAATAGTCAGAACCTTAAGCAAAACAATCCAAATTCAATTGATTTGTTATGCACAGGGGATATCAAGGAGGGATCTATTATAAGCTCTTCCTTAGAAAATATTATGAATGAAGAATCACCATGCAAGACAGTATGTAATTCACACAGCAAACTTTTTGATGGATTTCCTGAAAGCATGTCATTTGCAGATGCACAGAACAGTAATCTTACCCCTTCAACTCTCAGCATAGTAACAAGTAATGTATCCCCAGTTCTAAAGTCTCCAACACCAAGTGTTTCTCCCAGAATCAGCAGTAGCAGGAAAAGTTTGAGGACTTCATCAATGATGACTGCTTCACAGAACATTCAGGATGACAATGAATTTGTTCCCGAGGATGTACATAATTCTTTTTCTAAATCCATTAAAAGTGGCTCTTCTAACAGATTATCAACTCAAAAATGTAGTAGTGTTGCACCAACTGAAAAATTGGCAGAAAGTATCCGTCATGGGCTTGAAGTTATTGACGGTTACCGCCAGAGTTTAGCAGTGAGACGGTCTTCATTCAGGTTCTCCTTCAAACCGGCAGAATTGAAGGTAAATGGACACGTTGACAAAGTTGATGTTGGGGTGCAAACTTTATCTCATGATGAGGCAGCAGAAGAAAACTTGGTATCGTTTGTGTGCAATAGTTGCAAGAGTAAAATGATGCAGCTTGAGGTTTGCGAGGCAGATGATAGCTCAAACCTGCAGTTGGTACCCATAGACGGTTCAGATTCTGCTGAAAAATCCATGATGCAACTCCCAAAAGTGGTCGAAAAAGTTCTGGCAGGAGCCATTAGAAGAGAAATGGCACTAGAAGAGTTTTGTTCCAGGCAAGCTTCTGAGATTATCCAACTCAACCGTTTGGTGCAACAGTACAAGCATGAGAGAGAATGTAACTCTGTATTAGGACAAACAAGGGAGGATAAAATTCTTCGTCTTCAGAGCCTTATGGATGGTGTTTTACCAAATGAAGACTTCCTAGAGGAAGAATTAGCATCTCTGACTCATGAGCATAAGGTCCTGACGGAAAAATATGAGAATCATCCAGAAGTATTAAGGACACAAATAGAATTAAAACGAACTCAAGATGAGTTGGAAAATTACCGAAATTTCTATGACTTGGGTGAGAAAGAAGTGTTATTAGAAGAGATTCAAGATTTGAGAAGCCAGCTGCAGTATTATGTTGACTCTTCCTGCTCAATATCTCGAAAACATAATGCTGTTTTGCAATTGAACTATTCCGAGCAAAATTTGGCTCTACCTCAAAACTCAATACCAGAGCTGACAGATGAGAGACCTGAGGAGAAGCTACAAAAGGAAAGAATACGTTGGACTGAGACAGAGAGCAAGTGGATTTCTCTATCTGAAGAACTTAGAAGTGAACTTGAAGCTTGTAGGTCACTTGTTAAAAGAAAAATTGTGAGCTTGAAATTGAAAAAAGATGTGGAGAAGAACTGA 3324 40.61 MKHFMQPRNAILKETQSPELSSSPISGLFSKSKPPRKQRSSKENAPPSDLNSMAADSKPSPATAAKLKSPLPPRPPSSNPLKRKLIMESVPENSNSGLSDSGVKVVVRMRPPCQDRDEGEVIVEKLSDDSLSINGQTFNFDAVSDTEATQLDIFELVGAPLVENCMSGFNSSVFAYGQTGSGKTYTMWGPANALSDENSLSHQQGLTPRVFEHLLARISEEQIKHADKQLKYQCHCSFLEIYNEQITDLLDPNRKNLQIREDVKSGVYVENLSEECVCTMADVTQLLIKGLSNRRTGATSINSESSRSHTVFTCVVESRCKIVADGLSSFKTSRINLVDLAGSERQKLTGAAGERLKEAGNINRSLSQLGNLINILAEISHTGKQRHIPYRDSRLTFLLQESLGGNAKLAMICSISPAQSCKSETFSTLRFAQRAKSIKNKAVVNEVMQDDVKHLREVIRQLKDELHRIKENGYNPNVTNGGHSTAWLRRSLSLLKSSLHHPVTLPHLDDDSDEEMEIDEEAVEKLCVELGNQSAGCGSVNLRNSDTSDLKSATASEVLRFSKSLPSMSCLECAVEDCCDVDVKMEVETSMKDEVITDSLTIIDQKTPDSQANSSNSQNLKQNNPNSIDLLCTGDIKEGSIISSSLENIMNEESPCKTVCNSHSKLFDGFPESMSFADAQNSNLTPSTLSIVTSNVSPVLKSPTPSVSPRISSSRKSLRTSSMMTASQNIQDDNEFVPEDVHNSFSKSIKSGSSNRLSTQKCSSVAPTEKLAESIRHGLEVIDGYRQSLAVRRSSFRFSFKPAELKVNGHVDKVDVGVQTLSHDEAAEENLVSFVCNSCKSKMMQLEVCEADDSSNLQLVPIDGSDSAEKSMMQLPKVVEKVLAGAIRREMALEEFCSRQASEIIQLNRLVQQYKHERECNSVLGQTREDKILRLQSLMDGVLPNEDFLEEELASLTHEHKVLTEKYENHPEVLRTQIELKRTQDELENYRNFYDLGEKEVLLEEIQDLRSQLQYYVDSSCSISRKHNAVLQLNYSEQNLALPQNSIPELTDERPEEKLQKERIRWTETESKWISLSEELRSELEACRSLVKRKIVSLKLKKDVEKN 1107
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4658516 4664558 + Bda005183.1 Bda11g00439 15547

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00439 1107 PRINTS Kinesin heavy chain signature 299 316 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bda11g00439 1107 PRINTS Kinesin heavy chain signature 388 409 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bda11g00439 1107 PRINTS Kinesin heavy chain signature 334 352 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bda11g00439 1107 PRINTS Kinesin heavy chain signature 168 189 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bda11g00439 1107 Coils Coil 946 966 - -
Bda11g00439 1107 ProSiteProfiles Kinesin motor domain profile. 102 438 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bda11g00439 1107 MobiDBLite consensus disorder prediction 606 626 - -
Bda11g00439 1107 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 103 470 IPR027417 -
Bda11g00439 1107 Pfam Kinesin motor domain 125 438 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bda11g00439 1107 Coils Coil 445 472 - -
Bda11g00439 1107 ProSitePatterns Kinesin motor domain signature. 333 344 IPR019821 GO:0003777|GO:0005524|GO:0007018
Bda11g00439 1107 MobiDBLite consensus disorder prediction 44 58 - -
Bda11g00439 1107 Gene3D Kinesin motor domain 94 472 IPR036961 -
Bda11g00439 1107 MobiDBLite consensus disorder prediction 699 721 - -
Bda11g00439 1107 SMART kinesin_4 100 446 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bda11g00439 1107 MobiDBLite consensus disorder prediction 1 81 - -
Bda11g00439 1107 MobiDBLite consensus disorder prediction 10 29 - -
Bda11g00439 1107 PANTHER CENTROMERE PROTEIN E 67 1099 - -
Bda11g00439 1107 PANTHER KINESIN-LIKE PROTEIN KIN-12B 67 1099 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00439 K10400 KIF15; kinesin family member 15 - csv:101216258 1333.55
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g00688 Bda-Chr5:55183225 Bda11g00439 Bda-Chr11:4658516 8.46E-07 dispersed
Bda09g00278 Bda-Chr9:3448587 Bda11g00439 Bda-Chr11:4658516 2.26E-115 dispersed
Bda11g00439 Bda-Chr11:4658516 Bda14g00526 Bda-Chr14:3800337 3.18E-22 dispersed
Bda11g00439 Bda-Chr11:4658516 Bda12g00948 Bda-Chr12:40545553 7.27E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g244 Blo01g00025 . . . . . . Bma05g00987 . . . . Car06g01297 . . Cpe08g00117 . . . . . . . . Cla06g00398 Cam06g0419 Cec06g0427 Cco06g0427 Clacu06g0406 Cmu06g0406 Cre06g1185 . Cone15ag0698 . . . . . . . Blo07g00066 Bda11g00439 . Bpe05g00795 Bpe13g00757 . Bma06g01400 . . . . . . . Cpe12g00346 . Bhi12g01988 . . . . . Lcy12g0897 . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005762 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g00439 Bda_Chr11 FPKM 7.520345 9.284367 1.993344 2.224935 4.009064 3.174885 3.310184 1.858001 1.769505