Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00442 ATGGAGGCGAAAATCTCTTTCATGCATGCCTCTCCCTACATAGTTCTATCACAGAGATTTTGCTCATCATTCAGGAAAACTTCTGCTCCCTTGTTTCTCTTTAGAAGAAGTACCCCGTGCAAAGTGCTCTCTTACCTTAATGTGACCCACTATTCTAATTGTTCAAATGTTGAGTTCCATTCTTCCTCAAAGCGAAGATCACGAGGACCTGTCATGTTAGCAAAGAAAGCATCTGAAGGGTCAAAGCAAGAAGATGGAAAATACAAGCATACTATTGACCTGCCAAAGACAACATTTGGAATGAGAGCAAATTCTTCAGTTAGAGAGCCTGAAATTCAGAAAATATGGGATGATAACGAGGTGTTCAAGAGAGTTTCTGATAGAAATACAGGGGAAAGCTTTATCCTTCATGATGGTCCTCCATATGCCAATGGAAATCTTCACATGGGCCATGCTTTGAATAAGATTTTAAAGGACATAATCAATCGTTATAAGCTTCTTCAAAATTATAAAGTTCATTATGTGCCTGGTTGGGACTGCCATGGCCTTCCAATTGAATTGAAAGTTCTGCAGTCTTTGGATAAAGATGCCAGAAAAGATCTTACCCCCACAAAATTAAGAGCCAAGGCTGCTAAATTTGCCAAAGAAACTGTGAAAACTCAGATGGCATCATTTAAGCGCTATGGAGTTTGGGGCGATTGGAAAAATCCATATCTAACTCTTGATCCAGAGTACGAAGCTGCACAGATTGAGGTGTTTGGTCAAATGGCCCTTAAAGGGTATATCTACAGAGGAAGGAAGCCAGTTCACTGGAGTCCCTCTTCACAAACAGCTCTTGCTGAAGCAGAACTTGAGTACCCTGAAGGGCATGTTTCGAAAAGCATATATGCCATTTTTAAATTAGTTAGTGCAACTCCATCTTCAAGGGGCTCACTAGAAGAATTTTTCCCTGATCTTTGTTTGGCCATATGGACTACAACTCCATGGACTATTCCAGCCAATGCTGCTGTTGCTGTCAATGCAAAGCTACAGTATGCCATAGTTGATTTACTAAATCCGATGGAAGATCTTGCAACGTCTGTTAGAAGTAAAAAGCGAACCCCCGGAAAAATTCTGAAGGAAGAGAGAAAACATTTTCTTATCGTTGCATCAGATCTTGTGCCAAAACTAGAAGCAACATTGGGCACAAAGCTTGTTATCAAGAAAACGCTGTTGGGGTCAGAGCTTGAGAACTGCAGGTATGCTCATCCGATAGACAATAGGCAATGTCCAGTTGTCATTGGAGGAGATTATATAACAACAGAATCTGGAACTGGATTAGTCCACACAGCTCCTGGACACGGTCAGGAAGATTATGTGACTGGGCTAAAGTATGGATTGCCTATACTTTCTCCTGTAGATGATGTGGGGAAGTTCACCGAAGAAGCTGGAGAGTTTAGCGGGCTTGATGTCCTTGGGGATGGTAATACTGCTGTCGTGAAATATTTGGATGAACGTTTGTCAATCATCATGGAAGAGTCATATGAGCATAAGTATCCATATGACTGGCGAACAAAGAAGCCCACAATATTTAGGGCAACTGAGCAGTGGTTTGCATCAGTGGAAGGATTTCGCCCGGCTGCTATTGATGGAATTGGTCAAGTGAAGTGGATACCTCCTCAGGCTGAAAACAGAATTTTGTCAATGACCTCCGCCCGCTCTGATTGGTGTATATCGCGCCAAAGGACATGGGGTGTCCCAATTCCAGTCTTTTACCACGTGCAATCAAAAGAGCCACTCATGAATGAAGAGACTATCAATCACATTAAATCTATAATTGCCCAAAAGGGTAGTGATGCATGGTGGTACATGGGCGTAGAGGACCTTCTCCCTGATATATACCGTGATAAAGCTTCAGAATATGAAAAAGGGACTGATACAATGGATGTGTGGTTTGATTCAGGCTCCTCATGGGCAGCAGTGTTGGCGAAGAGAAATGGCCTTAGTTTTCCAGCAGATTTGTATCTTGAAGGCACTGATCAGCATCGAGGCTGGTTTCAAAGTTCTTTATTAACAAGCATTGCTACAAAAGGAGTGGCTCCATATTCCAGTGTTGTAACACATGGATTTGTATTGGATGAGAAGGGTTTAAAAATGAGTAAATCTTTGGGTAATGTTGTGGACCCACATGCTGTTATTGAAGGTGGGAAGAATCAAAAGGAAGCACCTGGCTATGGAGCCGATGTCCTACGACTTTGGGTTTCCAGTGTAGATTATACAGGTGATGTAATGATAGGTCCTCAAGTTCTCCGCCAAATGTCAGACATCTATAGGAAGCTGCGAGGAACACTGAGATTCCTTTTAGCAAATCTACATGATTGGACAACTGAGAACACTGTTATATATCACGAGCTTCCAGAGATTGATCAACATGCACTATTTCAACTGGAAAATGTCGTTAAAAACATTAAAGAGAGCTACGAAAGCTATCAGTTCTTTAAGATATTTCAGATCATACAACGGTTTGTAATTGTCGACCTATCAAATTTCTACTTTGATGTTGCTAAAGATCGGCTTTACGTCGGGGGCTCGGAGAGTTTTACAAGGAGAAGTTGTCAAACAGTTCTTGCTGCTCATCTCATTTCCATTGCCAGAGTAATAGCTCCCATATTACCCCATTTAGCTGAGGATGTATGGCAGAATCTTCCCTTTTCGTATAGCGGGGAAGATGGTTCCATTTCCAAGTTTATTTTCGAGTCAAGATGGCCTGCCCTTAATCAAACGTGGCTTGCTTTTCCCATGGAAGAAACTAATTTTTGGGCTAAACTTCTAGAGCTAAGAACAGAGGTGAACAAAGTCCTCGAAATAGCTCGGACTGGAAAGTTGATCGGATCAAGCTTAGAAGCAAAAGTTTATCTTCATGCTGCAGAAGCCAGTCTTGCCTCCAGGTTGAGTGAAATGTGTGTGGCTAAAAATGACGCAGACGCGTTACAACGGATATTTATTACATCCCAGGTGGAGGTTCTTCTCTCCATAGAGCCAGATCTTGTAAATATACCATATACTGGAGAGTGCATCATTCAAGGAACTAGCCGGGTTTGGATAGGCGTGTCTCGAGCCGAAGGCTCGAAATGTGAACGATGCTGGAATTTCTCAACTTGGGTTGGCTCCTTTATCGAGCACCCGACCCTCTGCACCCGCTGCTATGATGTCGTAGCTGCTCTCAAGCCCCTTCCAGCCATAGCTACAGTCAGCTGA 3237 42.63 MEAKISFMHASPYIVLSQRFCSSFRKTSAPLFLFRRSTPCKVLSYLNVTHYSNCSNVEFHSSSKRRSRGPVMLAKKASEGSKQEDGKYKHTIDLPKTTFGMRANSSVREPEIQKIWDDNEVFKRVSDRNTGESFILHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVHYVPGWDCHGLPIELKVLQSLDKDARKDLTPTKLRAKAAKFAKETVKTQMASFKRYGVWGDWKNPYLTLDPEYEAAQIEVFGQMALKGYIYRGRKPVHWSPSSQTALAEAELEYPEGHVSKSIYAIFKLVSATPSSRGSLEEFFPDLCLAIWTTTPWTIPANAAVAVNAKLQYAIVDLLNPMEDLATSVRSKKRTPGKILKEERKHFLIVASDLVPKLEATLGTKLVIKKTLLGSELENCRYAHPIDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTGLKYGLPILSPVDDVGKFTEEAGEFSGLDVLGDGNTAVVKYLDERLSIIMEESYEHKYPYDWRTKKPTIFRATEQWFASVEGFRPAAIDGIGQVKWIPPQAENRILSMTSARSDWCISRQRTWGVPIPVFYHVQSKEPLMNEETINHIKSIIAQKGSDAWWYMGVEDLLPDIYRDKASEYEKGTDTMDVWFDSGSSWAAVLAKRNGLSFPADLYLEGTDQHRGWFQSSLLTSIATKGVAPYSSVVTHGFVLDEKGLKMSKSLGNVVDPHAVIEGGKNQKEAPGYGADVLRLWVSSVDYTGDVMIGPQVLRQMSDIYRKLRGTLRFLLANLHDWTTENTVIYHELPEIDQHALFQLENVVKNIKESYESYQFFKIFQIIQRFVIVDLSNFYFDVAKDRLYVGGSESFTRRSCQTVLAAHLISIARVIAPILPHLAEDVWQNLPFSYSGEDGSISKFIFESRWPALNQTWLAFPMEETNFWAKLLELRTEVNKVLEIARTGKLIGSSLEAKVYLHAAEASLASRLSEMCVAKNDADALQRIFITSQVEVLLSIEPDLVNIPYTGECIIQGTSRVWIGVSRAEGSKCERCWNFSTWVGSFIEHPTLCTRCYDVVAALKPLPAIATVS 1078
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4694484 4708361 - Bda005186.1 Bda11g00442 15550

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00442 1078 Coils Coil 1078 1078 - -
Bda11g00442 1078 CDD IleRS_core 508 758 - -
Bda11g00442 1078 SUPERFAMILY ValRS/IleRS/LeuRS editing domain 290 512 IPR009008 GO:0002161|GO:0006418
Bda11g00442 1078 Hamap Isoleucine--tRNA ligase [ileS]. 86 1066 IPR023585 GO:0004822
Bda11g00442 1078 TIGRFAM ileS: isoleucine--tRNA ligase 99 964 IPR002301 GO:0000166|GO:0004822|GO:0005524|GO:0006428
Bda11g00442 1078 SUPERFAMILY Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 770 1066 IPR009080 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Bda11g00442 1078 CDD Anticodon_Ia_Ile_BEm 758 944 IPR033708 GO:0000049
Bda11g00442 1078 Gene3D HUPs 488 758 IPR014729 -
Bda11g00442 1078 Pfam tRNA synthetases class I (I, L, M and V) 112 757 IPR002300 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Bda11g00442 1078 Gene3D - 759 1069 - -
Bda11g00442 1078 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 141 152 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Bda11g00442 1078 PRINTS Isoleucyl-tRNA synthetase signature 670 679 IPR002301 GO:0000166|GO:0004822|GO:0005524|GO:0006428
Bda11g00442 1078 PRINTS Isoleucyl-tRNA synthetase signature 510 525 IPR002301 GO:0000166|GO:0004822|GO:0005524|GO:0006428
Bda11g00442 1078 PRINTS Isoleucyl-tRNA synthetase signature 134 145 IPR002301 GO:0000166|GO:0004822|GO:0005524|GO:0006428
Bda11g00442 1078 PRINTS Isoleucyl-tRNA synthetase signature 636 649 IPR002301 GO:0000166|GO:0004822|GO:0005524|GO:0006428
Bda11g00442 1078 PRINTS Isoleucyl-tRNA synthetase signature 322 345 IPR002301 GO:0000166|GO:0004822|GO:0005524|GO:0006428
Bda11g00442 1078 Gene3D - 584 637 - -
Bda11g00442 1078 Pfam Anticodon-binding domain of tRNA ligase 802 966 IPR013155 GO:0004812|GO:0006418
Bda11g00442 1078 MobiDBLite consensus disorder prediction 65 86 - -
Bda11g00442 1078 PANTHER SOLEUCYL-TRNA SYNTHETASE 82 1064 - -
Bda11g00442 1078 PANTHER ISOLEUCINE--TRNA LIGASE, MITOCHONDRIAL 82 1064 - -
Bda11g00442 1078 Gene3D HUPs 101 301 IPR014729 -
Bda11g00442 1078 Gene3D - 302 476 IPR009008 GO:0002161|GO:0006418
Bda11g00442 1078 SUPERFAMILY Nucleotidylyl transferase 87 766 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00442 K01870 IARS, ileS; isoleucyl-tRNA synthetase [EC:6.1.1.5] - qsu:111988501 1797.33
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g00442 Bda-Chr11:4694484 Bda13g00853 Bda-Chr13:10073486 0 dispersed
Bda11g00442 Bda-Chr11:4694484 Bda04g01175 Bda-Chr4:62392642 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1190 . . . . . . . . . . . Cma14g01465 . Car14g01301 . . Cpe03g01233 . . . . . . . . . . . . . . . . . . . . . Cme07g01901 . Blo07g00070 Bda11g00442 . . Bpe13g00734 . Bma06g01423 Sed09g0135 . Cmo14g01504 . . . . . . Bhi12g02569 Tan06g2212 Cmetu10g0535 Lac12g1942 Hepe03g0423 . Lcy13g0545 . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007511 1 4 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g00442 Bda_Chr11 FPKM 5.659915 6.05304 0.342988 0.339273 0.191463 0.0 0.13213 0.199353 0.211379