Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00455 AATAATAAACGCACTCCTCGACGAGAAGGACTTCGACCTCGTCGTTCAAAAATGGTAGTCGGGGAACAACTAAGTTTGGAATCTGACGGTGAGCAAGATACTTCAGAAGAGAAGGTTGACCAAGATGAAACTGAAAATGTGAATGATATGGAGGATAATGATGGAGATGATGGTCAAAATGAAGAAGAATGCGAGGATGAGGATGAGGGCGAAGCAGATGGTGATGATGAAGATGGTGAAGAGCAAGAGGAGGGAAGGAGACGATATGATCTTCGTAATCGAGCAGAAGTGCGCAGGCTATCTATGGAAGAAGGTAAGGGAAGACCAAGGTCTCCTCGCAGGGTTTTGCATCAAGGAATGGGATTGAAAGTTGGCAGAGAAATTCGTAAGGGTGGATCAAGAGTTCATAAGCGTCATCGTCTACAAAGGATTGAAGATTCTGATGATTCTCTTTTAGTGGATGAGCTAGACCAAGCTCCTTCCATTCCATGGGGGCGAAGCGGGAGCAGATCTGGACCACCTTGGCTCTTTGGGGGATTAGATATTCAAAGTACAACTGCATGGGGATTGAATATTGCTGCTTCTGGTTGGGGTCATCAGAGTGATGCTTTCTCTTCCCTGACTTCTGGAATTCAAACTGCTGGTCCAAGTTCGAAAGGAGGGGCAGATATCCAACCATTACAGGTTGATGAAAGTGTCAGTTTCAATGATATAGGTGGTCTTTCTGAATACATTGATGCTTTAAAAGAAATGGTTTTCTTTCCCCTCTTATATCCTGATTTCTTTTCAAGTTATCACATCACCCCTCCAAGAGGGGTATTATTATGCGGTCCTCCCGGCACGGGGAAAACACTTATTGCGAGGGCTCTTGCTTGTGCTGCATCCAAGGCTGGCCAGAAGGTCAGTTTTTACATGCGTAAGGGTGCTGATGTTCTTAGTAAATGGGTCGGTGAGGCTGAAAGACAATTGAAACTATTATTTGAGGAAGCGCAAAAGAATCAGCCTTCCATCATATTTTTTGATGAAATTGATGGACTTGCTCCAGTAAGGTCCAGCAAACAAGAGCAAATTCATAATTCTATAGTTTCTACTTTACTAGCGTTGATGGATGGTCTTGACTCTCGTGGGCAAGTAGTATTAATTGGTGCTACCAATCGAATTGATGCTATTGATGGAGCTTTACGTCGTCCTGGTCGCTTTGATCGTGAATTTAACTTTCCTTTGCCTGGTTGTGATGCACGTGCTGAAATATTAGACATTCATACACGAAAATGGAAACATTCTCCTTCAAAGGACCTTAGACTAGAACTTGCAGCAACATGTGTAGGATATTGCGGTGCTGATTTGAAAGCATTATGCACTGAAGCTGCAATTCGTGCATTTCGTGAAAAATATCCTCAAGTTTATACGAGTGATGACAAATTTCTGATAGACGTTGATTCTGTGAAGGTTGAAAAGTATCATTTTGTTGAAGCCATGTCAACAATAACTCCTGCTGCACATAGAGGCACTGTTGTTCATTCCAGACCTCTGTCTTTGGTTGTTGCACCATGTTTAAAGTCCCATCTCCAGAAAACCATGAATTTTATATTTGATGTATTTCCTCCTGTTGGGATGTCTTCAGAATTAGCAAAACTTTCTTTCCTTTCATATGGTTCAGCAATTCCTCTGGTGTACAGGCCTCGGCTTCTCCTTTGTGGAAATGAAAGTGTTGGGCTGGATCATCTTGGACCCGCTGTTTTACATGAATTGGAGAAGTTTCCCGTTCATTCATTAGGACTCCCGTCGTTGCTTTCGGATCCTAGTGCAAAGACTCCTGAGGAAGCCTTGGTACACATATTTGGTGAAGCAAGAAGGACAACGCCATCAATCCTGTACTTACCTCAGTTCCACCATTGGTGGGAGACTGCAGATGAACAACTTAGGGCAGTTCTGCTTTCATTATTAGAAGAACTACCATCTGATCTACCAATATTATTGCTCGGAACATCTTCTTCTACACTTGTTGAAATTGATGAGAAAGCTTCTTTTGTATTTCCTCGTAGTTGCATCTATAAAGTCGATCCACCATCTAAAGAAGACAGGTCCCTGTTTTTTGATAGTTTAATTGAAGCTGCTTTTTCAGTCTTGGTGGAGGGCATGGCAAAAAACTCCCTAGAGTCAACGTCCCTTCCTCAACTTCCTAAGGCTCCTAAAGTAGAAAGTGGTCCAAAGGCCTCTGAGTTAAGAGCTAAGGTAGAAGCTGAACAGCATGCCCTTCGCCGAATGCGGATGTGTCTCAGAGATGTTTGCAACAGGATTTTGTATGATAAACGATTTAGTGTATTCCATTATCCAGTCTTAGATGAAGATGCTCCAAACTATCGCTTGGTTATTCAAAATCCCATGGATGTTGCTACTTTACTGCAGCGAGTTGACTCCGGGCTATACATTACATCTTCAGCATTCATGCAAGATGTAGATCTTATTGTTTCTAATGCAAAGGCTTATAATGGAGATGATTACAACGGTGCTAGGATTGTCAGTAGAGCTTATGAGCTTCGAGATGCTGTCCAAGGAATGCTGTCACAGATGGATCCTGGGCTAGTCACAATCTGCGACAAGATTGTTGTTCAAGGAGGTCCTTCGCCCATTCCTACTGATTTAGTGGGATCACCTTTCACATTAGCTCCAGTTGCGCAGCTGGGTACTGTAACTAGGGCGAGTGCACGTCTTCGTAATGTTCAACCAGAAGTTAATATGGGTCAAAACTATGAGGCTTTGAAACGACCTAAGAAGAATGTTGATTCTGCACATCATGCAGTTGGAGAAGATAAGCTGCGGAATCAAGACTCATCACCACCAAAAGCAACTCAAGAACCTGAGACCAATGAAGCAAATCCAGCAACGGTCGAACCCGAACCCATTTTGGTCGACGATAATAACAACTCAAACTCAACCTGCAGAGAGGCTCCTGATCTTGCCGATGCAAATGGGTCCCATGATTTGATGGCGTCAGATGGGGATATCTCTGGCCAGATTGAATCTCTGAAGCAGTTGTTTGTGGGAAGAACTGAAAACTATGGAATTCCACAGCTTGAGAGGGTGTACACGAGAATCATGAAGGGAGTTTTCGAATCCAAAGGCACAAAGAAGGATGATATGAAGCCTTCGATTTTGAAGTTTTTGTTTAAATTTGCAGAGGATGAAAGAAATTTC 3198 42.9 NNKRTPRREGLRPRRSKMVVGEQLSLESDGEQDTSEEKVDQDETENVNDMEDNDGDDGQNEEECEDEDEGEADGDDEDGEEQEEGRRRYDLRNRAEVRRLSMEEGKGRPRSPRRVLHQGMGLKVGREIRKGGSRVHKRHRLQRIEDSDDSLLVDELDQAPSIPWGRSGSRSGPPWLFGGLDIQSTTAWGLNIAASGWGHQSDAFSSLTSGIQTAGPSSKGGADIQPLQVDESVSFNDIGGLSEYIDALKEMVFFPLLYPDFFSSYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQKNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRIDAIDGALRRPGRFDREFNFPLPGCDARAEILDIHTRKWKHSPSKDLRLELAATCVGYCGADLKALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVKVEKYHFVEAMSTITPAAHRGTVVHSRPLSLVVAPCLKSHLQKTMNFIFDVFPPVGMSSELAKLSFLSYGSAIPLVYRPRLLLCGNESVGLDHLGPAVLHELEKFPVHSLGLPSLLSDPSAKTPEEALVHIFGEARRTTPSILYLPQFHHWWETADEQLRAVLLSLLEELPSDLPILLLGTSSSTLVEIDEKASFVFPRSCIYKVDPPSKEDRSLFFDSLIEAAFSVLVEGMAKNSLESTSLPQLPKAPKVESGPKASELRAKVEAEQHALRRMRMCLRDVCNRILYDKRFSVFHYPVLDEDAPNYRLVIQNPMDVATLLQRVDSGLYITSSAFMQDVDLIVSNAKAYNGDDYNGARIVSRAYELRDAVQGMLSQMDPGLVTICDKIVVQGGPSPIPTDLVGSPFTLAPVAQLGTVTRASARLRNVQPEVNMGQNYEALKRPKKNVDSAHHAVGEDKLRNQDSSPPKATQEPETNEANPATVEPEPILVDDNNNSNSTCREAPDLADANGSHDLMASDGDISGQIESLKQLFVGRTENYGIPQLERVYTRIMKGVFESKGTKKDDMKPSILKFLFKFAEDERNF 1066
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4808814 4816126 + Bda033030 Bda11g00455 15563

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00455 1066 PANTHER AAA DOMAIN-CONTAINING 4 1061 IPR045199 -
Bda11g00455 1066 SMART AAA_5 269 410 IPR003593 -
Bda11g00455 1066 SMART bromo_6 753 860 IPR001487 GO:0005515
Bda11g00455 1066 CDD AAA 269 408 - -
Bda11g00455 1066 MobiDBLite consensus disorder prediction 915 1000 - -
Bda11g00455 1066 ProSiteProfiles Bromodomain profile. 776 838 IPR001487 GO:0005515
Bda11g00455 1066 Pfam ATPase family associated with various cellular activities (AAA) 273 408 IPR003959 GO:0005524|GO:0016887
Bda11g00455 1066 MobiDBLite consensus disorder prediction 1 91 - -
Bda11g00455 1066 MobiDBLite consensus disorder prediction 945 959 - -
Bda11g00455 1066 MobiDBLite consensus disorder prediction 922 944 - -
Bda11g00455 1066 PRINTS Bromodomain signature 785 801 IPR001487 GO:0005515
Bda11g00455 1066 PRINTS Bromodomain signature 819 838 IPR001487 GO:0005515
Bda11g00455 1066 PRINTS Bromodomain signature 801 819 IPR001487 GO:0005515
Bda11g00455 1066 MobiDBLite consensus disorder prediction 29 80 - -
Bda11g00455 1066 Pfam Bromodomain 765 834 IPR001487 GO:0005515
Bda11g00455 1066 SUPERFAMILY Bromodomain 742 863 IPR036427 GO:0005515
Bda11g00455 1066 MobiDBLite consensus disorder prediction 970 984 - -
Bda11g00455 1066 MobiDBLite consensus disorder prediction 1 16 - -
Bda11g00455 1066 Gene3D - 745 872 IPR036427 GO:0005515
Bda11g00455 1066 Gene3D - 409 494 - -
Bda11g00455 1066 CDD Bromo_AAA 753 863 - -
Bda11g00455 1066 Pfam AAA+ lid domain 436 472 IPR041569 -
Bda11g00455 1066 MobiDBLite consensus disorder prediction 722 741 - -
Bda11g00455 1066 ProSitePatterns AAA-protein family signature. 378 396 IPR003960 GO:0005524|GO:0016887
Bda11g00455 1066 PANTHER BNAC08G44480D PROTEIN 4 1061 - -
Bda11g00455 1066 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 557 770 IPR027417 -
Bda11g00455 1066 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 232 497 IPR027417 -
Bda11g00455 1066 Gene3D - 231 501 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00455 K22531 ATAD2; ATPase family AAA domain-containing protein 2 [EC:3.6.1.-] - qsu:111996254 1597.41
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g00455 Bda-Chr11:4808814 Bda02g00745 Bda-Chr2:48209698 1.24E-41 dispersed
Bda13g00283 Bda-Chr13:3584878 Bda11g00455 Bda-Chr11:4808814 1.63E-06 dispersed
Bda11g00455 Bda-Chr11:4808814 Bda09g01446 Bda-Chr9:46246712 1.50E-41 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1203 . . . . . . . . Cmo08g00210 . . . . . . . . . . . . . . . Cla08g00471 Cam08g0895 . Cco08g0596 Clacu08g0614 . Cre08g0434 . . . Cone11ag0618 . . . . . Blo07g00085 Bda11g00455 . . Bpe13g00740 . Bma06g01415 . . . . . . . . Cpe17g01096 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009586 1 1 2 1 1 1 0 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g00455 Bda_Chr11 FPKM 17.220213 19.775326 37.592842 37.867054 86.198341 83.874664 87.563278 48.079094 48.736198