Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00458 ATGTTGTCGTTCCAAATGTCCCATCTTGCTATTCTCAGAACTGCGAAACTGCATTCTGTTGGGCGAATGGCCATGTCCAGCCCAAGATTTTCGTCCAAACGACAAATTCCTTCTCTTCCAGTGATTGAACCTTCTAATGGCGCGTCTGAGTCTGAAATTCTTGTGTTTGTGAGGAAGAAGAGAGTGAAAAAGAGTGTAGAAGTTCAAGAAACGGAGGTCGCCGTTGCATCGAATGATACCCCCAAGAAACATGGCCCACCGGATATTGAGGATTTTGCCTACAAAATTAAAAAAGGTCCCTCCAAATCCAGCGGGAAGTCAAATCCCGAATCACTTGGACTTTCGATCAATGCTCAAATTTCTGATCCAGTTAGATCGGCAGCCACAGGTGAACCGCCAGGGAACTGGGAAGAAGTTCTTAAAAGGATATGCAAGATGAGGTCTTCCGAAGATGCACCAGTTGACACCATGGGATGTGAAAAGGCAGGCTGCACACTTCCTCCCAAGGAAAGAAGATTTGCTGTCTTGGCATCTTCCCTTCTATCAAGCCAAACGAAGGATAATGTTACTCATGGAGCTATTCAGAGACTAAATGAAAGCAATCTGCTTAATGCTGACGCCATTGACAAAGCAGATGAAGCTACCATCAAAACCTTGATTTACCCAGTAGGATTTTACACTAGAAAAGCTAGTAATTTGAAGAAAATTGCAAAATTATGTCTCACAAAGTATGATGGAGACATACCGTCGACGTTGGAGGAGCTACTTCTACTTCCCGGAATAGGTCCGAAGATGGCTCATTTGGTCATGAATGTTGGATGGAACAATGTTCAGGGGATATGCGTCGATACGCACGTGCATCGTATATGCAATCGTCTTGGATGGGTGTCGCGGTCGCGGAGGGGAAAGAAAGAGAAAACATCAACTCCAGAGGAAACAAGAAAGGCATTGGAGTTGTGGCTTCCAAAGGAAGAATGGATCCCAATCAATCCCCTTTTGGTGGGATTTGGACAGACTATATGTACTCCCCTTAGACCTCGGTGCGGACTGTGCAGTGTTAGTGACTTCTGCCCTTCTGCGTTTAAGGAGACTTCGAGTCCATTGTCGAAACCAAAACGATCAGCTCGAGTTCAAGATCCCTAA 1143 45.23 MLSFQMSHLAILRTAKLHSVGRMAMSSPRFSSKRQIPSLPVIEPSNGASESEILVFVRKKRVKKSVEVQETEVAVASNDTPKKHGPPDIEDFAYKIKKGPSKSSGKSNPESLGLSINAQISDPVRSAATGEPPGNWEEVLKRICKMRSSEDAPVDTMGCEKAGCTLPPKERRFAVLASSLLSSQTKDNVTHGAIQRLNESNLLNADAIDKADEATIKTLIYPVGFYTRKASNLKKIAKLCLTKYDGDIPSTLEELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSRSRRGKKEKTSTPEETRKALELWLPKEEWIPINPLLVGFGQTICTPLRPRCGLCSVSDFCPSAFKETSSPLSKPKRSARVQDP 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4832948 4838156 - Bda005198.1 Bda11g00458 15566

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00458 380 Pfam HhH-GPD superfamily base excision DNA repair protein 178 317 IPR003265 GO:0006284
Bda11g00458 380 Gene3D - 271 363 IPR023170 -
Bda11g00458 380 Hamap Endonuclease III-like protein 1 [NTHL1]. 132 363 IPR030841 GO:0003906|GO:0005634|GO:0006281|GO:0006285|GO:0019104
Bda11g00458 380 ProSitePatterns Endonuclease III family signature. 246 275 IPR004036 -
Bda11g00458 380 ProSitePatterns Endonuclease III iron-sulfur binding region signature. 341 357 IPR004035 -
Bda11g00458 380 Gene3D Hypothetical protein; domain 2 168 270 - -
Bda11g00458 380 PANTHER ENDONUCLEASE III-LIKE PROTEIN 1 87 374 - -
Bda11g00458 380 MobiDBLite consensus disorder prediction 76 113 - -
Bda11g00458 380 CDD ENDO3c 173 337 IPR003265 GO:0006284
Bda11g00458 380 Pfam Helix-hairpin-helix motif 243 271 IPR000445 GO:0003677
Bda11g00458 380 MobiDBLite consensus disorder prediction 83 97 - -
Bda11g00458 380 SUPERFAMILY DNA-glycosylase 152 368 IPR011257 GO:0003824|GO:0006281
Bda11g00458 380 SMART ccc3 340 360 IPR003651 GO:0051539
Bda11g00458 380 PANTHER ENDONUCLEASE III HOMOLOG 2, CHLOROPLASTIC 87 374 - -
Bda11g00458 380 SMART endo3end 181 339 IPR003265 GO:0006284
Bda11g00458 380 MobiDBLite consensus disorder prediction 361 380 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00458 K10773 NTH; endonuclease III [EC:4.2.99.18] - qsu:111996257 462.225
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1201 . . . . . . . . . . . Cma14g01469 . Car14g01306 . . Cpe03g01238 Bhi01g02693 . . . Hepe05g1227 . Lcy11g1140 . . . . . . . . . . Cone11ag0617 . . . Cme07g01894 . . Bda11g00458 . . . . Bma06g01418 . . Cmo14g01508 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010237 1 4 0 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g00458 Bda_Chr11 FPKM 21.251177 25.516893 39.981819 40.89323 37.736515 39.681065 34.711239 56.539433 56.723564