Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00466 ATGATTAGAATGATCGCCACAGCACGGATCGTGATGCCGGGTGCAATGGTGAGGTTATCTGCAGGTAGAGTTCGGTTCTCCATACCTGAGCAAGCATTATGCTTTCTTGCTGGAGCCAATTCCATCTTCACCGGAGAGAAGCTTCTGACGACACCAAATAATGATTTTGACACTGATCAACTCATGTTTAAGATGCTGGTCTGA 204 46.08 MIRMIATARIVMPGAMVRLSAGRVRFSIPEQALCFLAGANSIFTGEKLLTTPNNDFDTDQLMFKMLV 67
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4917509 4917712 - Bda005204.1 Bda11g00466 15574

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00466 67 Pfam Biotin and Thiamin Synthesis associated domain 1 64 IPR010722 -
Bda11g00466 67 PANTHER BIOTIN SYNTHASE 1 66 IPR002684 GO:0004076|GO:0009102
Bda11g00466 67 Gene3D Aldolase class I 1 67 IPR013785 -
Bda11g00466 67 SUPERFAMILY Radical SAM enzymes 1 64 - -
Bda11g00466 67 SMART BATS_2 1 67 IPR010722 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00466 K01012 bioB; biotin synthase [EC:2.8.1.6] - egr:104445564 125.561
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1189 . . . . . . . . . Cmo17g00574 . . . . . . . . . . . . . . Cla08g00450 Cam08g0879 Cec08g0460 Cco08g0582 Clacu08g0597 . Cre08g0419 Cone14ag0578 . . . . . . . . Blo07g00095 Bda11g00466 . . Bpe13g00733 . Bma06g01424 . . . . Cma17g00592 . Car17g00547 Cpe12g00504 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010238 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 2 1 1 1 1 1 1 2 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g00466 Bda_Chr11 FPKM 1.138889 3.562746 3.54748 2.934073 0.820639 2.407051 0.183197 3.151211 1.67857