Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00470 ATGTCCTTGGAAGAGTCTCTATGGAGGTCTAGGGCTTTTGCTGATGCTGGAGCTGATGTGCTGTTTATTGATGCACTAGCTTCAAAAGATGAGATGAGGGCTCTTTGTAAAATTTCTCCGCTAGTTCCAAAAATGGCAAACATGCTTGAAGGAGGAGGGAAAACACCAATACTCAATCCTCTTGAACTTGAGGAGTTGGGATTTAAACTTGTCTGTTATCCACTTTCCTTGATTGGGGTATCCATTCGAGCAATGCAGGACTCACTAGTTGCAATAAAAGGAGGTCGTGTTCCTCCTCCTGGAAGTATGCCGTCATTTGAAGAAATGAAGGAAATTTTAGGTTTCACGCATTATTATGAAGAAGAAAAGCGATATGCCTCTTCTTCTAATCTTTCTTCTCAAAGAGGCAAGAGAAATTTTATTGACGACCCATACTTATATTGGCCTAATTCCTCATCCTGA 462 40.91 MSLEESLWRSRAFADAGADVLFIDALASKDEMRALCKISPLVPKMANMLEGGGKTPILNPLELEELGFKLVCYPLSLIGVSIRAMQDSLVAIKGGRVPPPGSMPSFEEMKEILGFTHYYEEEKRYASSSNLSSQRGKRNFIDDPYLYWPNSSS 153
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4957493 4959248 + Bda005209.1 Bda11g00470 15578

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00470 153 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE FAMILY PROTEIN 1 135 - -
Bda11g00470 153 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE 1 135 - -
Bda11g00470 153 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 3 126 IPR015813 GO:0003824
Bda11g00470 153 Pfam Phosphoenolpyruvate phosphomutase 3 92 - -
Bda11g00470 153 Gene3D - 1 132 IPR040442 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00470 - - - cpap:110812954 234.958
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1119 . . . . . . . . . . . Cma14g01497 . Car14g01329 . . Cpe03g01257 Bhi01g02631 Tan10g1238 . . . . Lcy11g1233 . . . . . . . . . . Cone11ag0627 . . . Cme07g01856 . Blo07g00101 Bda11g00470 . . Bpe13g00728 . . . . Cmo14g01532 . . . . . . . . . . . . . Cla07g01581 Cam07g1678 Cec07g1773 Cco07g1736 Clacu07g1662 Cmu07g1628 Cre07g2002 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004913 1 4 1 0 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 2 1 2 1 2 4 2 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g00470 Bda_Chr11 FPKM 3.218782 1.925102 76.519051 79.644119 10.074153 12.30584 10.392322 1.029984 1.104537