Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00473 ATGGCAAGCGAAAGTAGAGACCATGTTCTCATGCTCCCGCACCTCGCCCATGGCCATCTTATCCCTTTTCTTGGACTAGCCAAGCGAATCCAGCAAATATCAGGCTTCGCCATAACCATAGCTTCTACTCCTCTCAACATTCAGTACCTCAAATCCACCGTCTCTTCCGCCTCCTCCTCCTCCTCCATCGTGTTTACCGAGCTCCCTTTCTCCGTGACCGACCACCGGATTCCTCCCAACGCTGAAAGCACAGAGAATCTCTCCCTCGACCAGATCGGAATCCTCTTTCATTTCACTCTCTCCCTCGAAGCTCCCGTTAGAAGTCTCATCGCTGATATCGTTAGAACAGAAGGAAAGCCGCCGGTCTGCATCATCTCCGACGTATTCTTCGGTTGGGCGACGAAAGTAGCGAGAAGCTTCGGAACTCGGAGTTTCGCCTTCACCACCGGCGGTGCGTACGGCACTCTGGCCTACGTTTCTCTCTGGATTCACTTACCCCATCGGGAAACTGCCGGCGACGAGTTTTCTATTCCGGGATTTCCTCCGACCATAAAATTCCATCGCTCCCACCTTCACAAATTCTTAAACGCCGCCGACGGAACGGATACATGGTCAACATTTTTCCAGCCCCAAATTTCACTTTCTCTAGATTCCGACGGGTGGCTCTGCAACTCAGTCGAAGAAATCGAGCCTTTCGGATTAGAGATGCTCAGAAACTTTGTAAAAACACAGGTATGGACAATCGGACCTCTTCTTCCTCCGGAGGCCCTTAAGAGGTCAGCCTCGAACTCCTCTACCGGGGTTAGTAACTTCGCCGGGAAACGAGCCGGAGTTCCGGCAGAAAAGTGTATTGAGTGGCTGAACTACCACGATTCTAACTCCGTTTTGTACATTTCGTTCGGCTCTCAGAACACAATAGGAGAAACCCAGATGATGGAACTAGCTTACGGATTGGAAGAAAGTGGAAAACCATTCATTTGGGTAATCCGGCCACCCCTCGGCTCCGACATCAAAGGCGAATTCAGAGCTCATCAATGGCTTCCTCCGGGCTTCGAAGAGCGGATAACAGAGAGCAAACAGGGTCTATTAATCCGGCAATGGGCACCTCAGCTGGAGATTCTCGGACACAACTCGACCGGAGCTTTCCTGAGCCACTGCGGGTGGAACTCGGTGTTAGAAAGCCTGAGCCAGGGGGTGCCACTGATTGGGTGGCCGATGGCGGCGGAGCAAGGGTATAATTCAAAGATGCTGGTGGAGGAGATGGGAGTGAGCGTGGAGCTAACGAGGGGGTTGCAGAAGGAAATACAGAGAGAGGAGGTGAAGAAGGTGGTGGAGTTCGTTTTGGACAAAAATGGCGGCGGATGGGAGATGAGGAAGAAGGCTGAAAAAGCAAAAGAGCAGATCAGAGCGGCAGTGAGGGAGGAGGGAGAAGAGAAGGGCTCATCAGTTAGAGCAGTAGATGATTTTGTCAAATTCATACAATCCAAGAACCAAGCTCTATAA 1503 51.5 MASESRDHVLMLPHLAHGHLIPFLGLAKRIQQISGFAITIASTPLNIQYLKSTVSSASSSSSIVFTELPFSVTDHRIPPNAESTENLSLDQIGILFHFTLSLEAPVRSLIADIVRTEGKPPVCIISDVFFGWATKVARSFGTRSFAFTTGGAYGTLAYVSLWIHLPHRETAGDEFSIPGFPPTIKFHRSHLHKFLNAADGTDTWSTFFQPQISLSLDSDGWLCNSVEEIEPFGLEMLRNFVKTQVWTIGPLLPPEALKRSASNSSTGVSNFAGKRAGVPAEKCIEWLNYHDSNSVLYISFGSQNTIGETQMMELAYGLEESGKPFIWVIRPPLGSDIKGEFRAHQWLPPGFEERITESKQGLLIRQWAPQLEILGHNSTGAFLSHCGWNSVLESLSQGVPLIGWPMAAEQGYNSKMLVEEMGVSVELTRGLQKEIQREEVKKVVEFVLDKNGGGWEMRKKAEKAKEQIRAAVREEGEEKGSSVRAVDDFVKFIQSKNQAL 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4978491 4979993 - Bda005212.1 Bda11g00473 15581

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00473 500 CDD GT1_Gtf-like 8 471 IPR002213 GO:0008194
Bda11g00473 500 PANTHER UDP-GLYCOSYLTRANSFERASE 92A1 3 494 - -
Bda11g00473 500 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 8 494 - -
Bda11g00473 500 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 287 449 IPR002213 GO:0008194
Bda11g00473 500 ProSitePatterns UDP-glycosyltransferases signature. 367 410 IPR035595 -
Bda11g00473 500 Coils Coil 458 478 - -
Bda11g00473 500 Gene3D Glycogen Phosphorylase B; 281 473 - -
Bda11g00473 500 PANTHER GLYCOSYLTRANSFERASE 3 494 - -
Bda11g00473 500 Gene3D Glycogen Phosphorylase B; 1 275 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00473 - - - jre:108987304 662.144
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda10g00120 Bda-Chr10:2952239 Bda11g00473 Bda-Chr11:4978491 1.66E-44 dispersed
Bda11g00473 Bda-Chr11:4978491 Bda15g00041 Bda-Chr15:1856579 8.34E-62 dispersed
Bda11g00473 Bda-Chr11:4978491 Bda03g00729 Bda-Chr3:6193866 7.79E-63 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1048 . . . . Bpe04g00937 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g00473 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008183 1 1 4 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g00473 Bda_Chr11 FPKM 18.03817 20.595066 9.476072 10.383258 11.488356 12.316478 10.536424 6.026558 6.221685