Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00474 GTGGATTTTGTATTGGATGGCAATATAAATTCTGATGTGGCTAAAGAGAGTGATAATCCAGTTGATGAAAATAAAACCGGCGTAAGTTCTATTGAAGGTTCATTCCAGGAGGATATAGATGAAAAGTTTATGCATTGTTCTTCTGAGAGGGATATAATGTCAGAGTCACTTGGTGTAGTGTCAATGGTCGATGAGCCATTTGTAGGCCAGGAATTTGAATCTGAAGCAGCAGCACATACATTTTATAATTGTTATGCAACACGCATGGGATTCATCATACGAGTGAGCAAGCTCTCGCGATCTAGACGAGATGGATCTGCTATTGGTCGTGCACTGGTTTGTAACAAAGAGGGTTATAGGATGCCTGACAGGCGTGAAAAGATTGTGAGGCAGAGGGCAGAAACAAGAGTTGGATGTAGGGCAATGATTTTAGTGAGGAAAGTTAGTTCTGGCAAATGGGTTATTACAAAATTTGTAAAGGAGCACACTCATCCAATGACACCTGGAAAAGCAAGGAGAGATTGCATTTACGATCAATATCCGAACGAGCACGACAAGATTCAAGAACTTTCGCAGCAGCTTGCTGTTGAGAAAAAACGGGCTGCGACGTACAAAAGACATTTAGAACTAATATTTGAGCACATAGAAGAGCATAATGAGAGTTTATCAAAGAAGATTCAACACATTGTGGACAGTGTGAAGGACATGGAAGCAAAAGAGCAGAAAAATCATAGA 735 40.41 VDFVLDGNINSDVAKESDNPVDENKTGVSSIEGSFQEDIDEKFMHCSSERDIMSESLGVVSMVDEPFVGQEFESEAAAHTFYNCYATRMGFIIRVSKLSRSRRDGSAIGRALVCNKEGYRMPDRREKIVRQRAETRVGCRAMILVRKVSSGKWVITKFVKEHTHPMTPGKARRDCIYDQYPNEHDKIQELSQQLAVEKKRAATYKRHLELIFEHIEEHNESLSKKIQHIVDSVKDMEAKEQKNHR 245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4983610 4984936 - Bda033033 Bda11g00474 15582

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00474 245 Pfam FAR1 DNA-binding domain 80 167 IPR004330 -
Bda11g00474 245 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN 1 242 - -
Bda11g00474 245 Coils Coil 187 207 - -
Bda11g00474 245 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 1 242 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00474 - - - qsu:112033516 374.4
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00580 Bda-Chr3:4830634 Bda11g00474 Bda-Chr11:4983610 5.02E-17 dispersed
Bda11g00474 Bda-Chr11:4983610 Bda13g00259 Bda-Chr13:3246544 2.85E-158 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1236 . . . . . Bpe14g01055 . . . . Cma06g01737 . . . Sed02g0957 . . Bhi01g03729 Tan10g1382 Cmetu07g1340 . Hepe05g1091 . Lcy11g0995 . . . . . . . . . . . . . . Cme07g01976 . Blo07g00110 Bda11g00474 . . . . Bma06g01436 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007556 2 1 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16591 PF03101 FAR1 2.30E-29 CL0274 Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g00474 Bda_Chr11 FPKM 27.603735 29.661816 26.415323 25.26173 32.621754 30.15394 30.11861 32.191696 30.339918