Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00500 ATGGCTTCCGGTAGTAACACAGCTCAGTCCGATCATCAACAAGGGCAGTCCTCTAACGCAAACACGAGCAACACCGTCGTGGTCCGGTCGGAATCCGTCAGCAAAGCCATAGCGCAGTACACCGTCGATGCTCGTCTCCACGCGGTCTTCGAGCAGTCAGGTAAGTCTGGAAAGTGCTTTGACTACTCCCAGTCTCTGAAAACCTCCACACAATCGGTTCCTGAACAACAAATTACGGCTTACCTTTCCAAGATTCAAAGGGGAGGGCGTATCCAGCCCTCTGGCTGTATGATGGCAGTAGAGGAAGCTAGTTTTCGAGTCATCGCATATAGCGTTAACGCGCGTGAAATGCTAGGCCTCACTCCCCAGTCCGTTCCTAACCTCGAAAAGCCAGAAATTCTCACAATCGGTACCGATGTGAGGAGTTTATTCACCCAATCTAGCGTACTTTTACTCGAGAGAGCATTTAGGTCTCGAGAAATCACCTTGTTGAATCCAGTGTGGATTCATTCGAAGAATTCTGGGAAACCATTTTACGCAATTTTGCATAGGATTGATGTTGGGATTGTGATTGATTTAGAGCCTGCTAGGACTGAGGATCCTGCCCTGTCGATTGCCGGGGCAGTGCAGTCTCAGAAGCTAGCAGTTCGAGCTATTTCCCAGCTGCAATCACTTCCAGGCGGTGATGTTAAACTCTTGTGTGATACTGTGGTTGATTGTGTTAGGGAGCTTACTGGTTATGATCGAGTTATGGTATTTAAATTCCATGAAGACGAGCATGGAGAGGTTGTTGCAGAAAGCAAGAAGTCGAATTTAGAGCCGTATATTGGATTACACTATCCGGCAACTGACATTCCTCAGGCTTCGAGGTTTCTCTTCAAGCAGAATCGGGTAAGGATGATCGTCGACTGCCATTCGACGCCTGTTCGTGTCATTCAGGATGAAGGATTAGTGCAGCCCTTATGTTTGGTCGGTTCGACTTTAAGAGCTCCCCATGGTTGTCATGCTCAATACATGGCTAATATGGGTTCTGTTGCTTCGTTAGCAATGGCAGTCATTATCAACGGTAGCGATAATGAAACGGGTGGTGGCCGGAACTCGATGAGGCTCTGGGGTTTGGTTGTCTGCCACCATAATTCGGCTCGGTGCATCCCCTTCCCGCTCCGTTATGCTTGCGAGTTTCTAATGCAGGCGTTTGGACTGCAACTGAATATGGAACTCCAGCTGGCCTCGCAGTTATCAGAAAAACATGTTTTGAAAACTCAAACTCTTTTGTGCGATATGATTCTTCGAGATTCGCCAGCCGGAATTGTTACTCAAAGTCCGAGTATTATGGATTTAGTGAAATGTGACGGGGCAGCACTTTACTACCAAGGGAAGTGTTATCTACTAGGAGTGACCCCGACCGAAGCCCAAATAAAAGATATCGCAAATTGGTTGTTGGCTTTTCATTGCGATTCGACCGGGCTAAGTACCGACAGCTTAGCTGAGGCTGGCTACCCTGGAGCAGCATTGCTCGGCGATGCGGTTTGTGGAATGGCCGTTGCTTATATCACTAAAAGGGATTTTCTCTTCTGGTTTCGATCTCACACAGCCAAAGAGATTAAGTGGGGTGGAGCAAAGCATCATCCGGACGACAAAGATGACGGTCAGAGAATGCATCCACGCTCTTCGTTCAACGCCTTTCTAGAAGTCGTAAAAAGCCGGAGTTTGCCTTGGGAGAATGCGGAGATGGATGCTATTCATTCGTTGCGACTTATCCTGCGAGACTCATTCAAAGACTCTGAATTCAACAACTCTAAGGCAGTTATAGGTGCCCTTCCCAAGGATCTTGAAGTGGAAAGGTTGGATGAGCTCAGTTCAGTTGCCAGAGAAATGGTTAGGTTGATTGAAACTGCTACTGCCCCCATTTTCGCTGTAGATGTCAATGGTCGAATAAATGGATGGAACGCGAAGGTTGCAGAGTTGACCGGATTTCCAGTGGAAGAGGCTATGGGTAAATCCTTGGTCCAAGATCTCGTATATAAGGAATCTGAAGAAACAGTTGAGAAACTTCTTCAACGAGCTTTGAGAGGCGAAGAAGACAAGAATGTAGAGATAAAATTGAAGATGTTTGGCTCAGAACAACATAAACGGCCCACTTTTGTCGTAGTCAATGCATGCTCAAGTCGGGATTACACAGACAATGTCGTCGGAGTTTGTTTTGTCGGTCAGGATGTTACTGACCAAAAAGTTGTTATGGATAAGTTCATTAACATACAAGGAGATTACAAGTCTATAATTCACAGTCCGAACCCTTTGATCCCTCCCATATTCGCCTCGGACGACAACACATACTGCTCGGAGTGGAATACTGCTATGGAAAAACTCACCGGCTGGTCAAAAGGAGATATTGTCGGAAAAATGTTGGTTGGAGAGGTCTTTGGCGGTTGTTGTCGGCTCAAGGGTTCGGATGGACTAATGAAATTTATGATTGTCTTGCACAACGCCATCGGAGGAAACGATACCGATAAATTTCCGTTTTCGCTTTTCGACCGGAACGGAAAATATGTGCAGGCCCTTTTAACCGCAAACAAGAGGGTCGACATGGAGGGTAATATCATTGGAGCTTTCTGCTTCTTACAGATAGTAAGTCCTGAATTACAGCAAGCCCTTAAAGTCCAGAGGTTGCAGGAGAAGAGATGTATGGCAAGGATGAAAGAGCTTGCCTATATTTGTCAAGAAGTCAAAAATCCTTTTAATGGAATTCGATTTACTCATTCACTTTTGGAAGCTACGGAATTAACTGAAGATCAAAAGCAATTTTTGGAGATAAGCACCGCTTGCGAGAAGCAGATGTCGAAGATTATGAAAGATGTGGATTTGGAAAGCATCGATGACGGCCCGTTGGAGCTCGAGAAGTCAGAGTTCTTGCTCGGGAGTGTCATTGATGTTGTTGTTGGCCAAGTGATGATAGCAGTTAGAGAAAGAAACTTGCAGCTAATTCGAGATATCCCGGAAGAAGTAAAAAGTCTCAGAGTTTATGGTGATCAAGTCAGAATTCAACAAGTTCTGACTGATTTTCTGTTGAATATGGTGCGATATGCGTCTTCTCCGGATGGTTGGGTTGAGATTCGAGTATGTCCAAGCTTGAAGCAAATCTCAGAGGGTCTCACTCTTGTGCATAATGAATTCAGGATTTTGTGCTCGGGCGAAGGACTTCCCTCAGAATTGGTGCAAGACATGTTTCATAGCAGTAGATGGGTGACTCGAGAAGGCCTCGGATTGAGCATATGTCGTAAGATTTTGAAGCTCATGAATGGGCAAGTCCAGTACGTCAGAGAGTCGGAAAACTGTTGCTTCCTAATTATCTTTGAGCTTCCTATGACTTGA 3372 45.73 MASGSNTAQSDHQQGQSSNANTSNTVVVRSESVSKAIAQYTVDARLHAVFEQSGKSGKCFDYSQSLKTSTQSVPEQQITAYLSKIQRGGRIQPSGCMMAVEEASFRVIAYSVNAREMLGLTPQSVPNLEKPEILTIGTDVRSLFTQSSVLLLERAFRSREITLLNPVWIHSKNSGKPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDVKLLCDTVVDCVRELTGYDRVMVFKFHEDEHGEVVAESKKSNLEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCHSTPVRVIQDEGLVQPLCLVGSTLRAPHGCHAQYMANMGSVASLAMAVIINGSDNETGGGRNSMRLWGLVVCHHNSARCIPFPLRYACEFLMQAFGLQLNMELQLASQLSEKHVLKTQTLLCDMILRDSPAGIVTQSPSIMDLVKCDGAALYYQGKCYLLGVTPTEAQIKDIANWLLAFHCDSTGLSTDSLAEAGYPGAALLGDAVCGMAVAYITKRDFLFWFRSHTAKEIKWGGAKHHPDDKDDGQRMHPRSSFNAFLEVVKSRSLPWENAEMDAIHSLRLILRDSFKDSEFNNSKAVIGALPKDLEVERLDELSSVAREMVRLIETATAPIFAVDVNGRINGWNAKVAELTGFPVEEAMGKSLVQDLVYKESEETVEKLLQRALRGEEDKNVEIKLKMFGSEQHKRPTFVVVNACSSRDYTDNVVGVCFVGQDVTDQKVVMDKFINIQGDYKSIIHSPNPLIPPIFASDDNTYCSEWNTAMEKLTGWSKGDIVGKMLVGEVFGGCCRLKGSDGLMKFMIVLHNAIGGNDTDKFPFSLFDRNGKYVQALLTANKRVDMEGNIIGAFCFLQIVSPELQQALKVQRLQEKRCMARMKELAYICQEVKNPFNGIRFTHSLLEATELTEDQKQFLEISTACEKQMSKIMKDVDLESIDDGPLELEKSEFLLGSVIDVVVGQVMIAVRERNLQLIRDIPEEVKSLRVYGDQVRIQQVLTDFLLNMVRYASSPDGWVEIRVCPSLKQISEGLTLVHNEFRILCSGEGLPSELVQDMFHSSRWVTREGLGLSICRKILKLMNGQVQYVRESENCCFLIIFELPMT 1123
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5316805 5320800 - Bda005235.1 Bda11g00500 15608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00500 1123 Gene3D PAS domain 615 750 - -
Bda11g00500 1123 ProSiteProfiles Histidine kinase domain profile. 904 1123 IPR005467 -
Bda11g00500 1123 Gene3D PAS domain 84 332 - -
Bda11g00500 1123 Pfam PAS fold 756 875 IPR013767 GO:0006355
Bda11g00500 1123 Pfam PAS fold 625 740 IPR013767 GO:0006355
Bda11g00500 1123 Gene3D - 937 1115 IPR036890 -
Bda11g00500 1123 Pfam GAF domain 230 407 IPR003018 GO:0005515
Bda11g00500 1123 SMART HKATPase_4 1009 1122 IPR003594 -
Bda11g00500 1123 Pfam Phytochrome region 420 594 IPR013515 GO:0006355|GO:0009584
Bda11g00500 1123 SUPERFAMILY PYP-like sensor domain (PAS domain) 85 197 IPR035965 -
Bda11g00500 1123 SMART pas_2 624 691 IPR000014 -
Bda11g00500 1123 SMART pas_2 755 825 IPR000014 -
Bda11g00500 1123 CDD HisKA 897 953 IPR003661 GO:0000155|GO:0007165
Bda11g00500 1123 PANTHER PHYTOCHROME 9 1122 - -
Bda11g00500 1123 SMART HisKA_10 897 961 IPR003661 GO:0000155|GO:0007165
Bda11g00500 1123 MobiDBLite consensus disorder prediction 1 26 - -
Bda11g00500 1123 Gene3D - 210 568 IPR029016 -
Bda11g00500 1123 ProSiteProfiles PAS repeat profile. 622 693 IPR000014 -
Bda11g00500 1123 PRINTS Phytochrome signature 144 166 IPR001294 GO:0006355|GO:0009584
Bda11g00500 1123 PRINTS Phytochrome signature 437 457 IPR001294 GO:0006355|GO:0009584
Bda11g00500 1123 PRINTS Phytochrome signature 555 573 IPR001294 GO:0006355|GO:0009584
Bda11g00500 1123 PRINTS Phytochrome signature 644 659 IPR001294 GO:0006355|GO:0009584
Bda11g00500 1123 PRINTS Phytochrome signature 329 350 IPR001294 GO:0006355|GO:0009584
Bda11g00500 1123 PRINTS Phytochrome signature 522 541 IPR001294 GO:0006355|GO:0009584
Bda11g00500 1123 PRINTS Phytochrome signature 718 735 IPR001294 GO:0006355|GO:0009584
Bda11g00500 1123 PRINTS Phytochrome signature 244 263 IPR001294 GO:0006355|GO:0009584
Bda11g00500 1123 PRINTS Phytochrome signature 625 641 IPR001294 GO:0006355|GO:0009584
Bda11g00500 1123 PRINTS Phytochrome signature 738 758 IPR001294 GO:0006355|GO:0009584
Bda11g00500 1123 CDD PAS 633 740 IPR000014 -
Bda11g00500 1123 ProSitePatterns Phytochrome chromophore attachment site signature. 329 338 IPR013516 -
Bda11g00500 1123 CDD HATPase_Phy-like 1008 1120 IPR044767 -
Bda11g00500 1123 Gene3D PAS domain 769 882 - -
Bda11g00500 1123 Pfam His Kinase A (phospho-acceptor) domain 901 961 IPR003661 GO:0000155|GO:0007165
Bda11g00500 1123 SUPERFAMILY GAF domain-like 415 592 - -
Bda11g00500 1123 SUPERFAMILY PYP-like sensor domain (PAS domain) 770 873 IPR035965 -
Bda11g00500 1123 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 229 397 IPR016132 -
Bda11g00500 1123 Pfam PAS fold 80 196 IPR013654 GO:0006355
Bda11g00500 1123 ProSiteProfiles PAS repeat profile. 756 808 IPR000014 -
Bda11g00500 1123 PIRSF Phytochrome_conventional 13 1123 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Bda11g00500 1123 PANTHER TWO-COMPONENT HISTIDINE KINASE 9 1122 - -
Bda11g00500 1123 SMART gaf_1 229 417 IPR003018 GO:0005515
Bda11g00500 1123 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1009 1118 IPR003594 -
Bda11g00500 1123 SUPERFAMILY PYP-like sensor domain (PAS domain) 627 736 IPR035965 -
Bda11g00500 1123 CDD PAS 767 875 IPR000014 -
Bda11g00500 1123 SUPERFAMILY GAF domain-like 209 404 - -
Bda11g00500 1123 Coils Coil 675 695 - -
Bda11g00500 1123 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 974 1118 IPR036890 -
Bda11g00500 1123 Gene3D - 412 585 IPR043150 -
Bda11g00500 1123 TIGRFAM sensory_box: PAS domain S-box protein 629 744 IPR000014 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda08g00333 Bda11g00500 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00824 Bda-Chr1:38924388 Bda11g00500 Bda-Chr11:5316805 0 dispersed
Bda07g00948 Bda-Chr7:11021123 Bda11g00500 Bda-Chr11:5316805 0 dispersed
Bda11g00500 Bda-Chr11:5316805 Bda01g01884 Bda-Chr1:55014503 7.55E-12 dispersed
Bda01g01665 Bda-Chr1:52770489 Bda11g00500 Bda-Chr11:5316805 0 transposed
Bda06g00414 Bda-Chr6:6278738 Bda11g00500 Bda-Chr11:5316805 0 transposed
Bda11g00500 Bda-Chr11:5316805 Bda08g00333 Bda-Chr8:3416139 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00500 K12121 - zju:107418995 1902.1