Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00500 ATGGCTTCCGGTAGTAACACAGCTCAGTCCGATCATCAACAAGGGCAGTCCTCTAACGCAAACACGAGCAACACCGTCGTGGTCCGGTCGGAATCCGTCAGCAAAGCCATAGCGCAGTACACCGTCGATGCTCGTCTCCACGCGGTCTTCGAGCAGTCAGGTAAGTCTGGAAAGTGCTTTGACTACTCCCAGTCTCTGAAAACCTCCACACAATCGGTTCCTGAACAACAAATTACGGCTTACCTTTCCAAGATTCAAAGGGGAGGGCGTATCCAGCCCTCTGGCTGTATGATGGCAGTAGAGGAAGCTAGTTTTCGAGTCATCGCATATAGCGTTAACGCGCGTGAAATGCTAGGCCTCACTCCCCAGTCCGTTCCTAACCTCGAAAAGCCAGAAATTCTCACAATCGGTACCGATGTGAGGAGTTTATTCACCCAATCTAGCGTACTTTTACTCGAGAGAGCATTTAGGTCTCGAGAAATCACCTTGTTGAATCCAGTGTGGATTCATTCGAAGAATTCTGGGAAACCATTTTACGCAATTTTGCATAGGATTGATGTTGGGATTGTGATTGATTTAGAGCCTGCTAGGACTGAGGATCCTGCCCTGTCGATTGCCGGGGCAGTGCAGTCTCAGAAGCTAGCAGTTCGAGCTATTTCCCAGCTGCAATCACTTCCAGGCGGTGATGTTAAACTCTTGTGTGATACTGTGGTTGATTGTGTTAGGGAGCTTACTGGTTATGATCGAGTTATGGTATTTAAATTCCATGAAGACGAGCATGGAGAGGTTGTTGCAGAAAGCAAGAAGTCGAATTTAGAGCCGTATATTGGATTACACTATCCGGCAACTGACATTCCTCAGGCTTCGAGGTTTCTCTTCAAGCAGAATCGGGTAAGGATGATCGTCGACTGCCATTCGACGCCTGTTCGTGTCATTCAGGATGAAGGATTAGTGCAGCCCTTATGTTTGGTCGGTTCGACTTTAAGAGCTCCCCATGGTTGTCATGCTCAATACATGGCTAATATGGGTTCTGTTGCTTCGTTAGCAATGGCAGTCATTATCAACGGTAGCGATAATGAAACGGGTGGTGGCCGGAACTCGATGAGGCTCTGGGGTTTGGTTGTCTGCCACCATAATTCGGCTCGGTGCATCCCCTTCCCGCTCCGTTATGCTTGCGAGTTTCTAATGCAGGCGTTTGGACTGCAACTGAATATGGAACTCCAGCTGGCCTCGCAGTTATCAGAAAAACATGTTTTGAAAACTCAAACTCTTTTGTGCGATATGATTCTTCGAGATTCGCCAGCCGGAATTGTTACTCAAAGTCCGAGTATTATGGATTTAGTGAAATGTGACGGGGCAGCACTTTACTACCAAGGGAAGTGTTATCTACTAGGAGTGACCCCGACCGAAGCCCAAATAAAAGATATCGCAAATTGGTTGTTGGCTTTTCATTGCGATTCGACCGGGCTAAGTACCGACAGCTTAGCTGAGGCTGGCTACCCTGGAGCAGCATTGCTCGGCGATGCGGTTTGTGGAATGGCCGTTGCTTATATCACTAAAAGGGATTTTCTCTTCTGGTTTCGATCTCACACAGCCAAAGAGATTAAGTGGGGTGGAGCAAAGCATCATCCGGACGACAAAGATGACGGTCAGAGAATGCATCCACGCTCTTCGTTCAACGCCTTTCTAGAAGTCGTAAAAAGCCGGAGTTTGCCTTGGGAGAATGCGGAGATGGATGCTATTCATTCGTTGCGACTTATCCTGCGAGACTCATTCAAAGACTCTGAATTCAACAACTCTAAGGCAGTTATAGGTGCCCTTCCCAAGGATCTTGAAGTGGAAAGGTTGGATGAGCTCAGTTCAGTTGCCAGAGAAATGGTTAGGTTGATTGAAACTGCTACTGCCCCCATTTTCGCTGTAGATGTCAATGGTCGAATAAATGGATGGAACGCGAAGGTTGCAGAGTTGACCGGATTTCCAGTGGAAGAGGCTATGGGTAAATCCTTGGTCCAAGATCTCGTATATAAGGAATCTGAAGAAACAGTTGAGAAACTTCTTCAACGAGCTTTGAGAGGCGAAGAAGACAAGAATGTAGAGATAAAATTGAAGATGTTTGGCTCAGAACAACATAAACGGCCCACTTTTGTCGTAGTCAATGCATGCTCAAGTCGGGATTACACAGACAATGTCGTCGGAGTTTGTTTTGTCGGTCAGGATGTTACTGACCAAAAAGTTGTTATGGATAAGTTCATTAACATACAAGGAGATTACAAGTCTATAATTCACAGTCCGAACCCTTTGATCCCTCCCATATTCGCCTCGGACGACAACACATACTGCTCGGAGTGGAATACTGCTATGGAAAAACTCACCGGCTGGTCAAAAGGAGATATTGTCGGAAAAATGTTGGTTGGAGAGGTCTTTGGCGGTTGTTGTCGGCTCAAGGGTTCGGATGGACTAATGAAATTTATGATTGTCTTGCACAACGCCATCGGAGGAAACGATACCGATAAATTTCCGTTTTCGCTTTTCGACCGGAACGGAAAATATGTGCAGGCCCTTTTAACCGCAAACAAGAGGGTCGACATGGAGGGTAATATCATTGGAGCTTTCTGCTTCTTACAGATAGTAAGTCCTGAATTACAGCAAGCCCTTAAAGTCCAGAGGTTGCAGGAGAAGAGATGTATGGCAAGGATGAAAGAGCTTGCCTATATTTGTCAAGAAGTCAAAAATCCTTTTAATGGAATTCGATTTACTCATTCACTTTTGGAAGCTACGGAATTAACTGAAGATCAAAAGCAATTTTTGGAGATAAGCACCGCTTGCGAGAAGCAGATGTCGAAGATTATGAAAGATGTGGATTTGGAAAGCATCGATGACGGCCCGTTGGAGCTCGAGAAGTCAGAGTTCTTGCTCGGGAGTGTCATTGATGTTGTTGTTGGCCAAGTGATGATAGCAGTTAGAGAAAGAAACTTGCAGCTAATTCGAGATATCCCGGAAGAAGTAAAAAGTCTCAGAGTTTATGGTGATCAAGTCAGAATTCAACAAGTTCTGACTGATTTTCTGTTGAATATGGTGCGATATGCGTCTTCTCCGGATGGTTGGGTTGAGATTCGAGTATGTCCAAGCTTGAAGCAAATCTCAGAGGGTCTCACTCTTGTGCATAATGAATTCAGGATTTTGTGCTCGGGCGAAGGACTTCCCTCAGAATTGGTGCAAGACATGTTTCATAGCAGTAGATGGGTGACTCGAGAAGGCCTCGGATTGAGCATATGTCGTAAGATTTTGAAGCTCATGAATGGGCAAGTCCAGTACGTCAGAGAGTCGGAAAACTGTTGCTTCCTAATTATCTTTGAGCTTCCTATGACTTGA 3372 45.73 MASGSNTAQSDHQQGQSSNANTSNTVVVRSESVSKAIAQYTVDARLHAVFEQSGKSGKCFDYSQSLKTSTQSVPEQQITAYLSKIQRGGRIQPSGCMMAVEEASFRVIAYSVNAREMLGLTPQSVPNLEKPEILTIGTDVRSLFTQSSVLLLERAFRSREITLLNPVWIHSKNSGKPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDVKLLCDTVVDCVRELTGYDRVMVFKFHEDEHGEVVAESKKSNLEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCHSTPVRVIQDEGLVQPLCLVGSTLRAPHGCHAQYMANMGSVASLAMAVIINGSDNETGGGRNSMRLWGLVVCHHNSARCIPFPLRYACEFLMQAFGLQLNMELQLASQLSEKHVLKTQTLLCDMILRDSPAGIVTQSPSIMDLVKCDGAALYYQGKCYLLGVTPTEAQIKDIANWLLAFHCDSTGLSTDSLAEAGYPGAALLGDAVCGMAVAYITKRDFLFWFRSHTAKEIKWGGAKHHPDDKDDGQRMHPRSSFNAFLEVVKSRSLPWENAEMDAIHSLRLILRDSFKDSEFNNSKAVIGALPKDLEVERLDELSSVAREMVRLIETATAPIFAVDVNGRINGWNAKVAELTGFPVEEAMGKSLVQDLVYKESEETVEKLLQRALRGEEDKNVEIKLKMFGSEQHKRPTFVVVNACSSRDYTDNVVGVCFVGQDVTDQKVVMDKFINIQGDYKSIIHSPNPLIPPIFASDDNTYCSEWNTAMEKLTGWSKGDIVGKMLVGEVFGGCCRLKGSDGLMKFMIVLHNAIGGNDTDKFPFSLFDRNGKYVQALLTANKRVDMEGNIIGAFCFLQIVSPELQQALKVQRLQEKRCMARMKELAYICQEVKNPFNGIRFTHSLLEATELTEDQKQFLEISTACEKQMSKIMKDVDLESIDDGPLELEKSEFLLGSVIDVVVGQVMIAVRERNLQLIRDIPEEVKSLRVYGDQVRIQQVLTDFLLNMVRYASSPDGWVEIRVCPSLKQISEGLTLVHNEFRILCSGEGLPSELVQDMFHSSRWVTREGLGLSICRKILKLMNGQVQYVRESENCCFLIIFELPMT 1123
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5316805 5320800 - Bda005235.1 Bda11g00500 15608

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00500 1123 Gene3D PAS domain 615 750 - -
Bda11g00500 1123 ProSiteProfiles Histidine kinase domain profile. 904 1123 IPR005467 -
Bda11g00500 1123 Gene3D PAS domain 84 332 - -
Bda11g00500 1123 Pfam PAS fold 756 875 IPR013767 GO:0006355
Bda11g00500 1123 Pfam PAS fold 625 740 IPR013767 GO:0006355
Bda11g00500 1123 Gene3D - 937 1115 IPR036890 -
Bda11g00500 1123 Pfam GAF domain 230 407 IPR003018 GO:0005515
Bda11g00500 1123 SMART HKATPase_4 1009 1122 IPR003594 -
Bda11g00500 1123 Pfam Phytochrome region 420 594 IPR013515 GO:0006355|GO:0009584
Bda11g00500 1123 SUPERFAMILY PYP-like sensor domain (PAS domain) 85 197 IPR035965 -
Bda11g00500 1123 SMART pas_2 624 691 IPR000014 -
Bda11g00500 1123 SMART pas_2 755 825 IPR000014 -
Bda11g00500 1123 CDD HisKA 897 953 IPR003661 GO:0000155|GO:0007165
Bda11g00500 1123 PANTHER PHYTOCHROME 9 1122 - -
Bda11g00500 1123 SMART HisKA_10 897 961 IPR003661 GO:0000155|GO:0007165
Bda11g00500 1123 MobiDBLite consensus disorder prediction 1 26 - -
Bda11g00500 1123 Gene3D - 210 568 IPR029016 -
Bda11g00500 1123 ProSiteProfiles PAS repeat profile. 622 693 IPR000014 -
Bda11g00500 1123 PRINTS Phytochrome signature 144 166 IPR001294 GO:0006355|GO:0009584
Bda11g00500 1123 PRINTS Phytochrome signature 437 457 IPR001294 GO:0006355|GO:0009584
Bda11g00500 1123 PRINTS Phytochrome signature 555 573 IPR001294 GO:0006355|GO:0009584
Bda11g00500 1123 PRINTS Phytochrome signature 644 659 IPR001294 GO:0006355|GO:0009584
Bda11g00500 1123 PRINTS Phytochrome signature 329 350 IPR001294 GO:0006355|GO:0009584
Bda11g00500 1123 PRINTS Phytochrome signature 522 541 IPR001294 GO:0006355|GO:0009584
Bda11g00500 1123 PRINTS Phytochrome signature 718 735 IPR001294 GO:0006355|GO:0009584
Bda11g00500 1123 PRINTS Phytochrome signature 244 263 IPR001294 GO:0006355|GO:0009584
Bda11g00500 1123 PRINTS Phytochrome signature 625 641 IPR001294 GO:0006355|GO:0009584
Bda11g00500 1123 PRINTS Phytochrome signature 738 758 IPR001294 GO:0006355|GO:0009584
Bda11g00500 1123 CDD PAS 633 740 IPR000014 -
Bda11g00500 1123 ProSitePatterns Phytochrome chromophore attachment site signature. 329 338 IPR013516 -
Bda11g00500 1123 CDD HATPase_Phy-like 1008 1120 IPR044767 -
Bda11g00500 1123 Gene3D PAS domain 769 882 - -
Bda11g00500 1123 Pfam His Kinase A (phospho-acceptor) domain 901 961 IPR003661 GO:0000155|GO:0007165
Bda11g00500 1123 SUPERFAMILY GAF domain-like 415 592 - -
Bda11g00500 1123 SUPERFAMILY PYP-like sensor domain (PAS domain) 770 873 IPR035965 -
Bda11g00500 1123 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 229 397 IPR016132 -
Bda11g00500 1123 Pfam PAS fold 80 196 IPR013654 GO:0006355
Bda11g00500 1123 ProSiteProfiles PAS repeat profile. 756 808 IPR000014 -
Bda11g00500 1123 PIRSF Phytochrome_conventional 13 1123 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Bda11g00500 1123 PANTHER TWO-COMPONENT HISTIDINE KINASE 9 1122 - -
Bda11g00500 1123 SMART gaf_1 229 417 IPR003018 GO:0005515
Bda11g00500 1123 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1009 1118 IPR003594 -
Bda11g00500 1123 SUPERFAMILY PYP-like sensor domain (PAS domain) 627 736 IPR035965 -
Bda11g00500 1123 CDD PAS 767 875 IPR000014 -
Bda11g00500 1123 SUPERFAMILY GAF domain-like 209 404 - -
Bda11g00500 1123 Coils Coil 675 695 - -
Bda11g00500 1123 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 974 1118 IPR036890 -
Bda11g00500 1123 Gene3D - 412 585 IPR043150 -
Bda11g00500 1123 TIGRFAM sensory_box: PAS domain S-box protein 629 744 IPR000014 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00500 K12121 PHYB; phytochrome B - zju:107418995 1902.1
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda08g00333 Bda11g00500 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00824 Bda-Chr1:38924388 Bda11g00500 Bda-Chr11:5316805 0 dispersed
Bda07g00948 Bda-Chr7:11021123 Bda11g00500 Bda-Chr11:5316805 0 dispersed
Bda11g00500 Bda-Chr11:5316805 Bda01g01884 Bda-Chr1:55014503 7.55E-12 dispersed
Bda01g01665 Bda-Chr1:52770489 Bda11g00500 Bda-Chr11:5316805 0 transposed
Bda06g00414 Bda-Chr6:6278738 Bda11g00500 Bda-Chr11:5316805 0 transposed
Bda11g00500 Bda-Chr11:5316805 Bda08g00333 Bda-Chr8:3416139 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g63 Blo01g00030 . . Bda08g00333 . . . Bma05g00993 . . Cma06g01564 Cma14g01590 Car06g01329 Car14g01399 Sed02g1136 Cpe08g00149 Cpe03g01327 Bhi01g01090 Tan10g1077 Cmetu06g1585 . Hepe05g1374 . Lcy11g1336 . . . . . . . Cone14ag0717 Cone15ag0729 . . Lsi05g01420 . . Cme06g00790 . Blo07g00144 Bda11g00500 . Bpe05g00798 Bpe13g00697 . Bma06g01466 . Cmo06g01560 Cmo14g01619 . . . . . . . . . . . . . Cla05g00707 Cam05g0774 Cec05g0782 Cco05g0775 Clacu05g0764 Cmu05g0730 Cre05g0804 . Csa03g01519 Chy06g00756 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda11g01830 . 533 1712 Histidine Kinase Gene Family AT2G17820 64.8 0.0e+00 1443.7
Bda14g00969 . 504 1648 Histidine Kinase Gene Family AT2G17820 64.8 0.0e+00 1357.0
Bda13g00598 . 305 1278 Histidine Kinase Gene Family AT2G01830 51.7 1.5e-270 929.5
Bda06g00425 . 197 1076 Histidine Kinase Gene Family AT2G01830 53.3 6.4e-250 860.9
Bda01g00649 . 1 1022 Histidine Kinase Gene Family AT5G10720 54.8 3.5e-284 974.5
Bda01g01665 . 2 1120 Histidine Kinase Gene Family AT1G09570 76.8 0.0e+00 1753.0
Bda06g00414 . 12 1121 Histidine Kinase Gene Family AT1G09570 55.2 0.0e+00 1250.7
Bda11g00500 CCT 29 1120 Histidine Kinase Gene Family AT1G09570 53.0 0.0e+00 1164.1
Bda01g00824 . 36 875 Histidine Kinase Gene Family AT1G09570 54.3 2.6e-265 912.1
Bda08g00333 CCT 1 680 Histidine Kinase Gene Family AT1G09570 52.1 6.9e-202 701.4
Bda11g00500 CCT 30 1061 Histidine Kinase Gene Family AT2G18790 76.6 0.0e+00 1604.0
Bda07g00948 . 15 1045 Histidine Kinase Gene Family AT2G18790 58.5 0.0e+00 1223.8
Bda01g00824 . 15 877 Histidine Kinase Gene Family AT2G18790 66.0 0.0e+00 1152.9
Bda06g00414 . 23 1076 Histidine Kinase Gene Family AT2G18790 53.5 0.0e+00 1114.8
Bda01g01665 . 22 1055 Histidine Kinase Gene Family AT2G18790 51.0 1.0e-306 1049.7
Bda08g00333 CCT 1 616 Histidine Kinase Gene Family AT2G18790 73.8 3.0e-269 925.2
Bda06g00414 . 10 1119 Histidine Kinase Gene Family AT5G35840 62.6 0.0e+00 1400.6
Bda11g00500 CCT 21 1122 Histidine Kinase Gene Family AT5G35840 51.5 0.0e+00 1123.6
Bda01g01665 . 10 1115 Histidine Kinase Gene Family AT5G35840 50.5 0.0e+00 1103.6
Bda01g00824 . 40 871 Histidine Kinase Gene Family AT5G35840 52.1 1.1e-255 880.2
Bda11g00500 CCT 30 1122 Histidine Kinase Gene Family AT4G16250 74.1 0.0e+00 1639.0
Bda07g00948 . 36 1107 Histidine Kinase Gene Family AT4G16250 57.5 0.0e+00 1250.0
Bda06g00414 . 24 1118 Histidine Kinase Gene Family AT4G16250 52.2 0.0e+00 1135.6
Bda01g00824 . 35 875 Histidine Kinase Gene Family AT4G16250 64.7 0.0e+00 1115.9
Bda08g00333 CCT 1 676 Histidine Kinase Gene Family AT4G16250 71.4 7.2e-287 983.8
Bda07g00948 . 14 1108 Histidine Kinase Gene Family AT4G18130 60.6 0.0e+00 1332.0
Bda11g00500 CCT 38 1116 Histidine Kinase Gene Family AT4G18130 58.4 0.0e+00 1252.7
Bda01g00824 . 14 871 Histidine Kinase Gene Family AT4G18130 68.5 0.0e+00 1168.7
Bda08g00333 CCT 1 677 Histidine Kinase Gene Family AT4G18130 54.3 1.6e-211 733.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004550 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 2 1 1 1 3 1 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g00500 Bda_Chr11 FPKM 1.537037 0.0 2.963058 1.300901 6.188986 4.543101 6.566882 0.0 0.0