Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00502 ATGCATCCCCTCCTCTCTCCTTCTTCCTCCAACCACCTCAGTATCGCGATCTTCTCTCCCGCTCAGAATCCGAACTGTCTCTCCAAGTTCACCTTCAAACTCTCCATTTCTCTGCAATGCTCGCCCACTTCCCTTTCTGTTCTCCCATATTGTTCCTCGCGGGACTCCGCTCCAGTTTTGGAAGATCTGTACTCACTCGCCTCCCAGCCATCCTCGGGCTCGGGAAATGATGACGATGGAGGGAACATAGACTCTGAATGGAAAAAACAGTTTGATGAAAGAGTTCTTGTGGTTCGCCGGCCGGTTTTGGAGCTTGACGGCGATGAATCTGGCTTGCGGAAGAGAGAGGAGGCGGAGGGCCGGACGAAATCATCGGTCATCGACGTTGGGCTCAATGAGGTTTCGAAAAATATTCCAACATTTGAACCGGTTACGAGGATCGGTTCTGGTTTCCTAGACAAGCCTTTAACAATCAATTTGGACTTGGCGTTGTACAAAGCAAAGGTGCTGGCCAGAAATTATCAGTACGAAGAAGCAGAGAAAATACTTGAGAAGTGTATATATTACTGGCCGGAAGACGGACGGTCGTATGTGGCCCTCGGAAAGACTTTGAGTAAGCGAAGGAAAACAGGTGAAGCTAGAGCTGTTTACGAGAGAGGCTGCCAAGCCACTCAAGGAGAAAATGCATATATTTGGCAGTGCTGGGCTGTTCTGGAAAGCAAGATGGGAAATGTTAGAAAGGCAAGAGAGCTGTTTGATGCATCCACAGTGGCTGATAAAAAACATGTTGCTGCTTGGCATGGATGGGCTTGTTTGGAGCTAAGACAGGGAAACATCAAGAAGGCCAGGAACCTGCTTGGCAAAGGTCTGAAATATTGTGGTGGAAACGAGTATATCTACCAAACACTTGCCCTGCTTGAAGTTAAATCCAATCGCTTTGAGCAGGCTCGATATTTGTTTAATCAGGCAACCATGTGCAATCCCAATAGCTGTGCAAGCTGGCTTGCTTGGGCACAATTGGAGATGCAACAGGAAAATAATCATGCTGCTAGGACACTGTTTGAGAAAGCAGTCCAGGCCAGCCCAAAGAACAGATTTGCATGGCATGTATGGGGTCTTTTTGAAGCTAATATGGGAAATATTGAGAAGGGAAGAAAACTCCTAAAGATAGGCCATTTCCTGAACCCAAGGGATCCAGTTTTACTCCAGTCTCTTGCATTATTGGAATACAAATACTCTACTGCAAATCTTGCTCGAGTTTTGTTCAGAAGAGCTTCTGAGTTGGATCCAAGGCACCAACCAGTTTGGATTGCATGGGGTTGGATGGAATGGAAAGAAGGAAATGTAGCAAAAGCAAGAGAGCTATACCAAAGAGCACTTTCAATTGATACAACTACTGAAAGTGCTGCTCGATGTCTACAGGCTTGGGGGGTTCTAGAACAGAGACTTGGTAATGTATCGGCAGCAAGGAGACTATTTAGATCTTCAATAAATATAAACTCTCAAAGTTATGTAACGTGGATGACTTTGGCATTACTGGAGGAGGATCAAGGAAATGCAATACGTGCTGAGGAAATTCGCGATCTTTATTTCCAGCAGCGCACTGAAGTTGTCGATGATGCTTCATGGGTTACCGGACTTTTGGATGTAATAGACCCAGCACTAGACAGTATAAAGAGGCTTTTGAAGTTGGAGCAGAATTTTCAGGAATTGCCTCACAGTTATACCATAAAAGCATCTGGAGGTGCTAAGAATAGCAAAGACGAGGAGTTAGCTAGTCATTCATTTCCCAGAAGTGAAGGCACTTTCGATGTGGACGCATTTATTTTGAAAAAGTTATCATTAGACACATCCAAACTAGTAGTTCAGATGGAACAATCACGAGCATCTTTCCCTCGGAGAATCAAGTACATAAGAAGACAGACGAGTACAGAAATGGCAGAACACCAGGTACTTTCTGGTGCTAAAGCTTAA 1974 45.04 MHPLLSPSSSNHLSIAIFSPAQNPNCLSKFTFKLSISLQCSPTSLSVLPYCSSRDSAPVLEDLYSLASQPSSGSGNDDDGGNIDSEWKKQFDERVLVVRRPVLELDGDESGLRKREEAEGRTKSSVIDVGLNEVSKNIPTFEPVTRIGSGFLDKPLTINLDLALYKAKVLARNYQYEEAEKILEKCIYYWPEDGRSYVALGKTLSKRRKTGEARAVYERGCQATQGENAYIWQCWAVLESKMGNVRKARELFDASTVADKKHVAAWHGWACLELRQGNIKKARNLLGKGLKYCGGNEYIYQTLALLEVKSNRFEQARYLFNQATMCNPNSCASWLAWAQLEMQQENNHAARTLFEKAVQASPKNRFAWHVWGLFEANMGNIEKGRKLLKIGHFLNPRDPVLLQSLALLEYKYSTANLARVLFRRASELDPRHQPVWIAWGWMEWKEGNVAKARELYQRALSIDTTTESAARCLQAWGVLEQRLGNVSAARRLFRSSININSQSYVTWMTLALLEEDQGNAIRAEEIRDLYFQQRTEVVDDASWVTGLLDVIDPALDSIKRLLKLEQNFQELPHSYTIKASGGAKNSKDEELASHSFPRSEGTFDVDAFILKKLSLDTSKLVVQMEQSRASFPRRIKYIRRQTSTEMAEHQVLSGAKA 657
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5335023 5338258 + Bda005237.1 Bda11g00502 15610

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00502 657 PANTHER PROTEIN HIGH CHLOROPHYLL FLUORESCENT 107 21 640 IPR044624 GO:0003729|GO:0006397
Bda11g00502 657 SUPERFAMILY TPR-like 362 532 IPR011990 GO:0005515
Bda11g00502 657 Gene3D Tetratricopeptide repeat domain 192 397 IPR011990 GO:0005515
Bda11g00502 657 SMART hat_new_1 208 241 IPR003107 GO:0006396
Bda11g00502 657 SMART hat_new_1 311 343 IPR003107 GO:0006396
Bda11g00502 657 SMART hat_new_1 413 445 IPR003107 GO:0006396
Bda11g00502 657 SMART hat_new_1 345 377 IPR003107 GO:0006396
Bda11g00502 657 SMART hat_new_1 243 275 IPR003107 GO:0006396
Bda11g00502 657 SMART hat_new_1 277 309 IPR003107 GO:0006396
Bda11g00502 657 SMART hat_new_1 484 516 IPR003107 GO:0006396
Bda11g00502 657 SMART hat_new_1 447 482 IPR003107 GO:0006396
Bda11g00502 657 SMART tpr_5 297 330 IPR019734 GO:0005515
Bda11g00502 657 SMART tpr_5 263 296 IPR019734 GO:0005515
Bda11g00502 657 SMART tpr_5 433 466 IPR019734 GO:0005515
Bda11g00502 657 SMART tpr_5 160 193 IPR019734 GO:0005515
Bda11g00502 657 SMART tpr_5 229 262 IPR019734 GO:0005515
Bda11g00502 657 SMART tpr_5 194 227 IPR019734 GO:0005515
Bda11g00502 657 SMART tpr_5 470 503 IPR019734 GO:0005515
Bda11g00502 657 SMART tpr_5 331 364 IPR019734 GO:0005515
Bda11g00502 657 SMART tpr_5 399 432 IPR019734 GO:0005515
Bda11g00502 657 Gene3D Tetratricopeptide repeat domain 398 576 IPR011990 GO:0005515
Bda11g00502 657 SUPERFAMILY TPR-like 176 409 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00502 - - - mcha:111009278 862.833
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g00502 Bda-Chr11:5335023 Bda13g00658 Bda-Chr13:7534408 7.23E-11 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g70 . . . . . . . . . . Cma06g01562 . Car06g01327 . Sed02g1137 Cpe08g00151 . Bhi01g01088 Tan10g1075 Cmetu06g0442 . Hepe05g1383 . Lcy11g1338 . . . . . . . . . Cone7ag0100 . Lsi05g01595 . . Cme06g00788 . Blo07g00145 Bda11g00502 . . Bpe13g00695 . . . Cmo06g01559 . . . . . . . . . . . . . . Cla05g00705 Cam05g0772 Cec05g0780 Cco05g0773 Clacu05g0762 Cmu05g0728 Cre05g0802 . Csa03g01517 Chy06g00754 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011618 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g00502 Bda_Chr11 FPKM 0.0 0.396491 7.731726 6.908651 11.2647 9.0881 11.426937 0.0 0.0