Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00507 ATGGATGAGGGAATGATGCTCGTCTTTTCTTACAAATTCGAAATTCTATCAGCAATGAGATCATCTGATGATGGAACTTGTAGGATATGGGATGCTAGGAACTCTTTGCAGCATAATCCACGAATTTACGTCCCAAGGCCATTAGATTCTGTAACTGGAAGGAGTAGTGGCCCTTCCTCTAGTACCGTTTCTCATAATCATCAAATATTTTGCTGTGCTTTTAATGCTAATGGGACCATTTTTGTCACTGGTAGTTCAGACACACTTGCAAGGGTGTGGAATGCATGTAAACCAAATATTGATAACCCAGATCAACCAAATCACGAGATAGATGTGTTAGCTGGGCACGAGAATGATGTTAATTATGTGCAATTTAGTGGGTGTGCAGTAGCGTCTAGATGCATTTCACCCGATCCTTCGAAGGAAGATAGTGGTCACAGATTTAAGAATTCATGGTTTACTCACGACAATATAGTTACTTGTTCCCGTGATGGTAGTGCAATTATTTGGGTTCCTAGGTCGCGTAGATCACATGGAAAAGCTGGCCGATGGACTAGGGCTTATCATTTAAAAGTTCCACCCCCATCAATGCCTCCACAACCTACACGAGGAGGTCCTCGTCAAAGAATTCTTCCCACTCCTCGTGGTGTTAATATGATTATTTGGAGCTTAGACAATCGCTTTGTCCTTGCTGCTATAATGGATTGTAGAATATGTGTTTGGAATGCTTCTGATGGTAGTTTAGTGCACTCTTTGACAGGTCATACAGAATCAACCTACGTGCTTGATGTCCATCCTTTCAATCCTCGGATAGCTATGAGTGCTGGCTATGATGGAAAAACTATAGTTTGGGATATATGGGAAGGAACACCTATTCAGATTTATGACATTTCTCGTTTCAAACTGGTGGATGGAAAGTTCTCATCGGATGGAACATCGATAATTCTTTCAGATGATGTAGGTCAGCTATATATATTAAGTACAGGACAAGGCGAGTCCAAACAGGATGCGAAGTACGACCAGTTCTTTCTTGGTGATTATCGTCCACTTGTTCAAGATACTTTTGGAAATGTAGTTGACCAAGAAACTCAACTTGCTCCTTACAGACGAAATATGCAAGATCTTCTTTGTGACTCAGGCATGATACCTTACCCAGAACCTTACCAGAGCATTTACCAGCAGAGACGGTTAGGATCTCTGGGTATTGAATGGCGTCCTTCTCCTTTAAAGTTTGCTGTTGGGCCTGACTTCAGTTTGGATCCAGCCTATCAGATGCTGCCTTTGGCAGACTTGGATCTGTTGATAGAACCTCTCCCGGAGTTTGTTGATGCCATGTACTGGGAGCCAGAAAATGAAGTGCAAAGTGACACTACTGATTCAGAGTATAATGTCCCAGAAGACTATTCTACTGGAGGGGAGCAAGGGAGTTTGAATTTAAATTCGTCCGTAGACCCAGAATGCAGCGGTGAAGACACTGGAGGAGAAGATGCTCAAAGAGACCGCCTTCGTAGATCGAAGAGGAAAAAACACAAGGCTGAAATGGAGTTCATGTCATTTTCTGGAAGGCGAATTAAAAGGAGGAATTTGGATGAGTCCGATGAACATCCAATCAAAAGTAATAGAAATAGGAAATTAAAAGTTCATCTAAAAACTTTAAAGAAGAAATCGGCATCAAAATCATCAAGGCCTCAAAGAGCTGCTGCAAGGAATGCTCGGCATTTCTTTTCCAAACTAAAAGGAGCATCTATTGATGTAGAGGACGAGGATGGCTCAGTAAGTGATTCATCAGAAAGCGATTCTGTATTGCAAGATTCAATCATTGAGAGTGGTGAGTCTGATACGTCTTTGCAGAACATAACCAAGCATTCAAAAGGAAAAGAGGTTTACTTGGACGACTCTGAGGATGCAATTCAACCTTTTGAACCTCCAAAATCTCATGTGAATTCCGTAAATAGGGGGAGGTTGATTCTCAAACTTCCAATTAGGAATTTTAATAGACCTGTGCCTCCAGAGGATATAATGCACAAATGTTCAAACACAACCAATGGGGTTGGCTCATCATCAAAAGCTCCTGGGGAAGCTGAAGAAGCTAATCAAAGCCGCACAAACCTTGAGGAACCAAATTACTCTCTTGAAGAAGCAGACATTACTGTTGGAGTAGAGGATTTACAAGACAAAATTGAAGGTCATATTAATCACTCTGTCCCTGATAAAAATGGCAGCATTAAATGGGGAGGGTTCAAGATCCGTTCGTCGAAGCGTCTAAAATTGGGAGAAACAGCTACATCTGATGTACAAGCAATATCTAGTTCTCGCCTTGATGATCGAAATGACATGGAGAGGAGCAGCCTCCATGAATATGTAGGACAAGAAAAGGATTCTCTCAATGTAATGCAGGATGGGGAAAATTTAAATGTAAAAGATATTGGACGTGGTGCTTTTGGAGGAGTTTCTGATCCAGCCATCAACATGGAGATCACAACTTTTGTCAAGCCTGGCGATCATGATACGGATCAAGAGCTGGATTATCTGGCCATTCACAACAGCACCACCTCATCTACCTGGAACAGGACTAATTCCTCTTTGAGTTGTCTAAGAGCAAGATGCCTGTCTCGACAAAGATAA 2625 41.79 MDEGMMLVFSYKFEILSAMRSSDDGTCRIWDARNSLQHNPRIYVPRPLDSVTGRSSGPSSSTVSHNHQIFCCAFNANGTIFVTGSSDTLARVWNACKPNIDNPDQPNHEIDVLAGHENDVNYVQFSGCAVASRCISPDPSKEDSGHRFKNSWFTHDNIVTCSRDGSAIIWVPRSRRSHGKAGRWTRAYHLKVPPPSMPPQPTRGGPRQRILPTPRGVNMIIWSLDNRFVLAAIMDCRICVWNASDGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGTPIQIYDISRFKLVDGKFSSDGTSIILSDDVGQLYILSTGQGESKQDAKYDQFFLGDYRPLVQDTFGNVVDQETQLAPYRRNMQDLLCDSGMIPYPEPYQSIYQQRRLGSLGIEWRPSPLKFAVGPDFSLDPAYQMLPLADLDLLIEPLPEFVDAMYWEPENEVQSDTTDSEYNVPEDYSTGGEQGSLNLNSSVDPECSGEDTGGEDAQRDRLRRSKRKKHKAEMEFMSFSGRRIKRRNLDESDEHPIKSNRNRKLKVHLKTLKKKSASKSSRPQRAAARNARHFFSKLKGASIDVEDEDGSVSDSSESDSVLQDSIIESGESDTSLQNITKHSKGKEVYLDDSEDAIQPFEPPKSHVNSVNRGRLILKLPIRNFNRPVPPEDIMHKCSNTTNGVGSSSKAPGEAEEANQSRTNLEEPNYSLEEADITVGVEDLQDKIEGHINHSVPDKNGSIKWGGFKIRSSKRLKLGETATSDVQAISSSRLDDRNDMERSSLHEYVGQEKDSLNVMQDGENLNVKDIGRGAFGGVSDPAINMEITTFVKPGDHDTDQELDYLAIHNSTTSSTWNRTNSSLSCLRARCLSRQR 874
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5373182 5392574 + Bda005243.1 Bda11g00507 15615

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00507 874 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 62 94 - -
Bda11g00507 874 Pfam WD domain, G-beta repeat 64 94 IPR001680 GO:0005515
Bda11g00507 874 Pfam WD domain, G-beta repeat 246 285 IPR001680 GO:0005515
Bda11g00507 874 PANTHER PH-INTERACTING PROTEIN-LIKE ISOFORM X1 13 723 - -
Bda11g00507 874 MobiDBLite consensus disorder prediction 511 540 - -
Bda11g00507 874 MobiDBLite consensus disorder prediction 452 570 - -
Bda11g00507 874 PANTHER WD REPEAT DOMAIN 9 13 723 - -
Bda11g00507 874 Gene3D - 207 341 IPR015943 GO:0005515
Bda11g00507 874 MobiDBLite consensus disorder prediction 452 487 - -
Bda11g00507 874 ProSiteProfiles Trp-Asp (WD) repeats profile. 252 294 IPR001680 GO:0005515
Bda11g00507 874 MobiDBLite consensus disorder prediction 541 560 - -
Bda11g00507 874 MobiDBLite consensus disorder prediction 680 705 - -
Bda11g00507 874 ProSitePatterns Trp-Asp (WD) repeats signature. 272 286 IPR019775 -
Bda11g00507 874 ProSiteProfiles Trp-Asp (WD) repeats profile. 62 94 IPR001680 GO:0005515
Bda11g00507 874 SUPERFAMILY WD40 repeat-like 21 333 IPR036322 GO:0005515
Bda11g00507 874 SMART WD40_4 106 171 IPR001680 GO:0005515
Bda11g00507 874 SMART WD40_4 204 242 IPR001680 GO:0005515
Bda11g00507 874 SMART WD40_4 56 94 IPR001680 GO:0005515
Bda11g00507 874 SMART WD40_4 245 285 IPR001680 GO:0005515
Bda11g00507 874 Gene3D - 6 186 IPR015943 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00507 K11797 PHIP, DCAF14; PH-interacting protein - csv:101214610 1060.06
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda11g00507 Bda13g00214 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g00507 Bda-Chr11:5373182 Bda04g00001 Bda-Chr4:2001 2.11E-06 dispersed
Bda11g00507 Bda-Chr11:5373182 Bda13g00214 Bda-Chr13:2726423 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g84 . . . . . . . . . . Cma06g01559 Cma14g01594 Car06g01323 Car14g01407 Sed12g0779 Cpe08g00155 Cpe03g01333 Bhi01g01082 Tan10g1069 Cmetu06g1713 . Hepe05g1390 . Lcy11g1346 . . . . . . . . . Cone7ag0105 Cone4ag0108 Lsi05g01586 . . Cme06g00781 Blo02g00479 Blo07g00153 Bda11g00507 Bda13g00214 . Bpe13g00691 Bma02g00927 . . Cmo06g01556 Cmo14g01626 . . . . . . . . . . . . . Cla05g00697 Cam05g0765 Cec05g0774 . . Cmu05g0720 . . Csa03g01511 Chy06g00747 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004915 2 1 2 1 1 1 2 1 1 1 1 1 3 1 1 2 1 4 2 1 1 1 1 1 1 1 1 1 1 2 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g00507 Bda_Chr11 FPKM 15.654632 20.8403 12.724762 11.505654 19.079666 22.050459 21.955618 13.897245 12.659567