Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00515 ATGCTTCCAGAGCTAGAGAAACCAAGAATCACGGAGATACAGGTCCGGATGGACTGTAATGGCTGCGTTCAGAAGATCAAGAAAGCTCTGACCGGCATCAATGGTATTTATGATCTCTACATAGATTTTCCGCAGCAAAAGTTGACGATAATTGGGTGGGCAGATCCAGAAAAGATAATCAAAGCTATTAAAAAGACCAGGAAGATCGCCACCATTTGTTCCCACGCAGAGCAAACTTCAGACCCTCCCCAACAAGCACCCACAGAAGGAAGCCCGCCGGCTTCTGAAGCAACAAATCAAACAGATGGTGGCCAACCAGAGACTGCTCCTGCGCCTGCGCCTGCGCCTGCGCCTGCGCCTGCGCCTGCGCCTGCGCCTGCGCCTACGCCAGCGCCAGCGCCAGAACCACCAAAAGACCCACCGCCGGAACATCCACAAGCGGAACCATCTCCATCACCGTCTCCGGTGCCTACAGCTACTAGCCATCCAAACCAGCCAGCACAAACCTCCGAACCAAAAGAAATCGGAGAAGTCCACGTAATACACCACCATCCTCCGGACTACGACTACCGGTACGGCGGCTATGGTGGACAATGGAACAAATACCATAATTCGGCCGGACAAGGATTTCAATACGAATCACCATCACCGCCAATCTACGTCACACATAGCTACAACACTTACAAGCCCTCACCCAGCGTAACCCAATACGAGTATGTCCGACCATCTCCGATAATCTCAGAATTCGAATATCTACGGTCACCGGAAATCCCATCTTATTACAGTAGGACGGATCGCTACAGTGAAGAATACAGCAACGGAAACGGCGGAAATGGTAACATTACCTCAATTTTCAGCGACGAGAACCCAAATGCATGCAAAATTATGTAG 891 50.84 MLPELEKPRITEIQVRMDCNGCVQKIKKALTGINGIYDLYIDFPQQKLTIIGWADPEKIIKAIKKTRKIATICSHAEQTSDPPQQAPTEGSPPASEATNQTDGGQPETAPAPAPAPAPAPAPAPAPAPTPAPAPEPPKDPPPEHPQAEPSPSPSPVPTATSHPNQPAQTSEPKEIGEVHVIHHHPPDYDYRYGGYGGQWNKYHNSAGQGFQYESPSPPIYVTHSYNTYKPSPSVTQYEYVRPSPIISEFEYLRSPEIPSYYSRTDRYSEEYSNGNGGNGNITSIFSDENPNACKIM 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5460591 5461665 + Bda005251.1 Bda11g00515 15623

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00515 296 MobiDBLite consensus disorder prediction 109 160 - -
Bda11g00515 296 ProSiteProfiles Heavy-metal-associated domain profile. 17 72 IPR006121 GO:0046872
Bda11g00515 296 PRINTS Proline rich extensin signature 102 118 - -
Bda11g00515 296 PRINTS Proline rich extensin signature 159 175 - -
Bda11g00515 296 PRINTS Proline rich extensin signature 81 93 - -
Bda11g00515 296 PRINTS Proline rich extensin signature 137 158 - -
Bda11g00515 296 PRINTS Proline rich extensin signature 125 137 - -
Bda11g00515 296 PANTHER COPPER TRANSPORT PROTEIN ATOX1-RELATED 1 296 IPR045181 GO:0046872
Bda11g00515 296 CDD HMA 12 71 IPR006121 GO:0046872
Bda11g00515 296 PANTHER OJ1116_C07.8 PROTEIN 1 296 - -
Bda11g00515 296 Pfam Heavy-metal-associated domain 13 66 IPR006121 GO:0046872
Bda11g00515 296 SUPERFAMILY HMA, heavy metal-associated domain 10 68 IPR036163 GO:0046872
Bda11g00515 296 MobiDBLite consensus disorder prediction 75 106 - -
Bda11g00515 296 Gene3D - 9 72 - -
Bda11g00515 296 MobiDBLite consensus disorder prediction 75 172 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00515 - - - vvi:100263762 254.603
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda11g00515 Bda13g00204 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g00515 Bda-Chr11:5460591 Bda09g00800 Bda-Chr9:15436039 1.06E-13 dispersed
Bda11g00515 Bda-Chr11:5460591 Bda13g00204 Bda-Chr13:2624088 4.27E-71 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g130 . . . . . Bpe14g01110 . . . . Cma06g01546 Cma14g01615 Car06g01312 Car14g01434 . Cpe08g00178 Cpe03g01356 Bhi01g01055 Tan10g1044 . . . . . . . . . . . . . . Cone7ag0125 . . . . . Blo02g00490 Blo07g00162 Bda11g00515 Bda13g00204 . Bpe13g00679 . Bma06g01485 . . Cmo14g01652 . . . . . . . . . . . . . Cla05g00677 Cam05g0744 Cec05g0750 Cco05g0750 Clacu05g0736 Cmu05g0701 Cre05g0775 . Csa03g01495 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005312 2 2 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g00515 Bda_Chr11 FPKM 11.166668 10.950937 16.031532 18.406565 3.35708 2.281619 3.566485 61.857361 58.698334