Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00523 ATGCATGCTCTTTCATGGGGTGGCAGGGTCGTGGGAAGAAGGCAACTTAAAAGTCACGCTAAAGGGAGCTTTGGTGTTCTTTCTGAGGAGCATGAAACATTTGATAATATATTTGAAGGGGGTTCCCTTTTATACTGCAACATGTCTTTTGAAGCCCTTCTGAATGTTAGAAAGCAACTTGAGGAATTGGGTTTTCCGTGCAAAGCTGTAAATGATGGTTTGTGGCTGCAGATGCTTTTAAGTCAGAGGGTGCAAGAAATTGGTTCTGATACATGCAAAAATTGTTGCCTCACAAGCATGATGTGCGCTTGCAGACTGCCTTATGGCTTTTCTCGTGGAGTTGAATCCACAGGATACTATGTAAATGAACATGGCCAGAACAATTCTGGTAACTTGGGAAATATATATGTTACTGATTCTGTGCCAGGTGAAACTAATGGCCTTTTCAGACCTGTGCGAGTGCATGTTAGGGGACCTGTTGAAGGACTAGCAGGAATTGGACGTGGAACAACATTTGTGCCAGCAAGTGCTTGGCCTCCAACACGGTTTGTTTTTTCTCGTGTGCCATTTGGTATGGGCAACAGAAATTCTCAGCCATCTCTTGCTAATGATGATTCAGATGCAAGAACTGATCTCAATGGGGAGTTATCTGGTGATGGTTTGACTGCTTTAGTTGGGCTAAGCCAGGGAGGGACTAGTTCAGCTGCTGTCCAGGGGGAGCAGACAGAAAGAGGATATGAGATTGATAATCAAAGCAGAGTACTTGGAGCCTCCGTGGCTGGACCAAGTACCTCTGGTATTCCAATTCAGATACAACAGTCACCAGAGCACGCCCTTGGAATTGAATGGGAAAGTGGGAGCAGTTCTATATCTCTGGACGTGAGAACGCCTTTGAGCCACTTTCCTCCTTTTCGCTTTGGAGTGCAATTTGAGTATGTGCACAGGCTTGGTGATGGCCAAGTCAAGCACTCACCTGAATTTTTTTATGCTGGCTCTTTATGGAAGATTAGTGTTCAGGCTTTTGGTGATGAAGATCCTCAAGGAAGACGAACTCTTGGCTTATTTCTGCACAGACGAAAAGCAGAGACAATCGATCCTCATAGAAAGGTAATGTATGTCGATTCCCGTGAAAAGGTTACGGCTCGATATCAGTTGATTTGTCCTTCAAAGAGAGAAGTCTTGGTATTTGGGAACTACAAGCAAACAGGAACTCTTTTACCAAAAGCACCTAAAGGATGGGGGTGGAGAACAGGCCATTTTATTTGA 1266 44.47 MHALSWGGRVVGRRQLKSHAKGSFGVLSEEHETFDNIFEGGSLLYCNMSFEALLNVRKQLEELGFPCKAVNDGLWLQMLLSQRVQEIGSDTCKNCCLTSMMCACRLPYGFSRGVESTGYYVNEHGQNNSGNLGNIYVTDSVPGETNGLFRPVRVHVRGPVEGLAGIGRGTTFVPASAWPPTRFVFSRVPFGMGNRNSQPSLANDDSDARTDLNGELSGDGLTALVGLSQGGTSSAAVQGEQTERGYEIDNQSRVLGASVAGPSTSGIPIQIQQSPEHALGIEWESGSSSISLDVRTPLSHFPPFRFGVQFEYVHRLGDGQVKHSPEFFYAGSLWKISVQAFGDEDPQGRRTLGLFLHRRKAETIDPHRKVMYVDSREKVTARYQLICPSKREVLVFGNYKQTGTLLPKAPKGWGWRTGHFI 421
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5540588 5543119 - Bda005258.1 Bda11g00523 15631

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00523 421 PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN 17 418 - -
Bda11g00523 421 CDD MATH 317 421 IPR002083 GO:0005515
Bda11g00523 421 MobiDBLite consensus disorder prediction 195 215 - -
Bda11g00523 421 PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN 17 418 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00523 - - - qsu:111988508 678.707
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g300 . . . . . . . . . . Cma06g01502 . Car06g01293 . . . . . . . . . . . . . . . . . . . . . . Lsi05g01544 . . Cme06g00736 . Blo07g00171 Bda11g00523 . . Bpe13g00667 . . . Cmo06g01500 . . . . . . . . . . . . . . Cla05g00656 Cam05g0717 Cec05g0728 Cco05g0727 Clacu05g0712 Cmu05g0677 Cre05g0751 . Csa03g01470 Chy06g00708 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010984 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g00523 Bda_Chr11 FPKM 15.163078 16.336197 18.256609 19.591051 13.425724 13.265084 16.02935 19.622089 19.209482