Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00530 ATGGCGATGAATGAGCGAAAAACTATTGACTTAGACCAAGGATGGGATACTATGCAAAAGGGTATTACCAAGCTGAAAAACATTCTAGAGGGATTGCCTGAACCGCAGTTTAACTCGGAGGACTATATGATGCTCTACACAACCATCTATAATATGTGTACTCAAAAACCTCCGCATGATTACTCCCAGCAACTGTATGATAAATACCGTGAATCTTTTGAAGAGTACATTACATCAACGGTGTTGCCATCTTTGAGGGAGAAGCATGATGAGTTTATGTTAAGAGAGCTTGTGAAAAGGTGGGCAAATCATAAAGTGATGGTTAGGTGGCTTTCTCGCTTCTTCTATTATCTTGATCGATATTTTATTGCTCGGAGATCTCTTCCGGCCCTTAATGAAGTTGGACTCACTTGCTTCCGCGAACTGGTTTATCAGGAGTTAAATGGCAAAGCCCGAGATGCTGTTATTTCTCTGATTGATCAAGAACGTGAAGGAGAGCAGATTGACCGAGCTCTTCTGAAAAATGTGTTAGACATATTTGTTGAGATTGGAATGGGGCAAATGGAATATTATGAAAATGACTTCGAGGCGGACATGCTTAAAGACACTGCTGCTTATTACTCACGAAAAGCTTCAAATTGGATTCTCGAAGATTCCTGTCCCGATTATATGCTAAAGGCCGAAGAGTGCTTAAAACGAGAAAAAGATAGAGTATCACATTATTTGCACTCAAGCAGCGAGCAAAAGTTACTTGAGAAAGTTCAGCATGAGTTGTTGTCTGTATATGCAACCCAACTGCTTGAAAAAGAGCATTCTGGTTGCCATGCTTTACTCAGAGATGACAAGGTGGAAGATCTGTCAAGAATGTTCAGACTATTTTCTAAAATTCCTAGAGGATTAGATCCCGTTTCCAATATTTTTAAGCAGCATGTCACTGCCGAAGGAACAGCCTTGGTTAAACTGGCAGAAGATGCTGCAAGCAATAGAAGGGTAAGTGTAACAGAAACTGATTTAGGTTGTGCTTTTCAGGTTTTTGTAAGAAAGGTTATCGAACTGCATGACAAATATCTAGCATACGTGAACGACTGCTTTCTAAATCATACTCTTTTTCACAAGGCTCTCAAAGAGGCTTTTGAGGTCTTCTGTAACAAAGGTGTTGCTGGAAGTTCAAGTGCGGAACTACTTGCTACTTTTTGTGATAACATTCTTAAGAAAGGTGGAAGTGAGAAGCTGAGTGATGAGGCCATTGAGGACACACTTGAGAAGGTCGTTAAGTTACTTGCTTATATTAGTGACAAGGACCTGTTTGCCGAATTCTACCGAAAAAAGCTAGCACGACGTCTTCTTTTTGATAAGAGTGCTAATGATGATCATGAGAGAAGTATTTTGACAAAATTGAAGCAGCAATGTGGTGGTCAATTCACCTCAAAGATGGAGGGAATGGTCACAGATTTGACCCTGGCAAGGGAGAATCAAACCAGCTTTGAGGAATATCTCAGTCACAACTCTCATGCAAATCCGGGGATTGACTTGACAGTTACTGTCCTGACCACTGGCTTCTGGCCTAGCTACAAGTCTTTTGATCTTAACCTTCCTGCAGAGATGGTCAAGTGTGTCGAAGTTTTCAGGGAATTTTATCAAACGAAAACGAAGCACAGGAAACTTACATGGATATACTCACTGGGTACTTGTAACATCATTGGGAAATTCGAACCAAAAACCATTGAATTGATTGTGACAACCTATCAGGCTTCTACTCTTCTACTATTCAACTCAGCAGACAGATTAAGTTATTCCGAAATCATGACACAATTGAACTTGAGTGACGACGATGTTGTTAGACTACTACATTCTTTGTCATGCGCAAAGTATAAAATTCTCAACAAGGAGCCGAACACCAAAACCATTTCGCCTACTGATTACTTCGAGTTTAACTCAAAATTTACAGACAAAATGAGAAGGATAAAGATTCCTCTCCCTCCTGTGGATGAGAAGAAGAAAGTAATTGAAGACGTGGACAAGGATCGACGGTATGCAATCGATGCTTCGATTGTGCGCATAATGAAGAGCAGAAAAGTTTTGGGTCATCAGCAGCTGGTGATGGAGTGCGTGGAGCAATTGGGTCGGATGTTCAAGGTCACAGATCTGACTCTGGCAAGGGAGAATCAAACCAGCTTTGAGGAATATCTCAGTCACAACTCTCATGCAAATCCTGGGATTGACTTGACAGTCACTGTCCTGACCACTGGCTTCTGGCCTAGCTACAAGTCTTTTGATCTTAACCTTCCTGCAGAGATGGTCAAGTGTGTCGAAGTTTTCAGGGAATTTTATCAAACGAAAACGAAGCACAGGAAACTTACATGGATATACTCACTGGGTACTTGTAACATCATTGGGAAATTCGAACCAAAAACCATTGAATTGATTGTGACAACCTATCAGGCTTCTACTCTTCTACTATTCAACTCAGCAGACAGATTAAGTTATTCCGAAATCATGACACAATTGAACTTGAGTGATGACGACGTTGTTAGACTACTACATTCTTTGTCATGCGCAAAGTATAAAATTCTCAACAAGGAGCCGAACACCAAAACCATTTCGCCTACTGATTACTTCGAGTTTAACTCAAAATTTACAGACAAAATGAGAAGGATAAAGATTCCTCTCCCTCCTGTGGATGAGAAGAAGAAAGTAATTGAAGACGTGGACAAGGATCGACGGTATGCAATCGATGCTTCGATTGTGCGCATAATGAAGAGCAGAAAAGTTTTGGGTCATCAGCAGCTGGTGATGGAGTGCGTCGAGCAATTGGGTCGGATGTTCAAGCCTGATTTCAAGGCGATCAAAAAGCGGATCGAAGATCTGATCACTCGAGACTATCTGGAACGGGACAAAGATAACCCCAACATGTTCAGGTACTTGGCATGA 2931 41.18 MAMNERKTIDLDQGWDTMQKGITKLKNILEGLPEPQFNSEDYMMLYTTIYNMCTQKPPHDYSQQLYDKYRESFEEYITSTVLPSLREKHDEFMLRELVKRWANHKVMVRWLSRFFYYLDRYFIARRSLPALNEVGLTCFRELVYQELNGKARDAVISLIDQEREGEQIDRALLKNVLDIFVEIGMGQMEYYENDFEADMLKDTAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSHYLHSSSEQKLLEKVQHELLSVYATQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKLAEDAASNRRVSVTETDLGCAFQVFVRKVIELHDKYLAYVNDCFLNHTLFHKALKEAFEVFCNKGVAGSSSAELLATFCDNILKKGGSEKLSDEAIEDTLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSHNSHANPGIDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEVFREFYQTKTKHRKLTWIYSLGTCNIIGKFEPKTIELIVTTYQASTLLLFNSADRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDYFEFNSKFTDKMRRIKIPLPPVDEKKKVIEDVDKDRRYAIDASIVRIMKSRKVLGHQQLVMECVEQLGRMFKVTDLTLARENQTSFEEYLSHNSHANPGIDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEVFREFYQTKTKHRKLTWIYSLGTCNIIGKFEPKTIELIVTTYQASTLLLFNSADRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDYFEFNSKFTDKMRRIKIPLPPVDEKKKVIEDVDKDRRYAIDASIVRIMKSRKVLGHQQLVMECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKDNPNMFRYLA 976
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5569311 5584610 - Bda005265.1 Bda11g00530 15638

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00530 976 Gene3D Cullin Repeats 267 390 - -
Bda11g00530 976 Gene3D - 893 976 IPR036388 -
Bda11g00530 976 Gene3D - 662 721 IPR036388 -
Bda11g00530 976 SUPERFAMILY Cullin homology domain 713 892 IPR036317 -
Bda11g00530 976 SUPERFAMILY Cullin homology domain 389 658 IPR036317 -
Bda11g00530 976 Gene3D Cullin Repeats 3 141 - -
Bda11g00530 976 SUPERFAMILY Cullin repeat-like 11 385 IPR016159 -
Bda11g00530 976 ProSiteProfiles Cullin family profile. 715 851 IPR016158 -
Bda11g00530 976 PANTHER CULLIN 3 711 IPR045093 -
Bda11g00530 976 Pfam Cullin protein neddylation domain 675 715 IPR019559 -
Bda11g00530 976 Pfam Cullin protein neddylation domain 906 968 IPR019559 -
Bda11g00530 976 Gene3D Cullin; Chain C, Domain 2 508 661 - -
Bda11g00530 976 Gene3D Cullin; Chain C, Domain 2 739 892 - -
Bda11g00530 976 PANTHER CULLIN 3B 3 711 - -
Bda11g00530 976 SUPERFAMILY Winged helix DNA-binding domain 659 717 IPR036390 -
Bda11g00530 976 SMART cul_2 599 801 IPR016158 -
Bda11g00530 976 SMART cul_2 421 570 IPR016158 -
Bda11g00530 976 Gene3D Cullin Repeats 391 505 - -
Bda11g00530 976 PANTHER CULLIN 3B 713 975 - -
Bda11g00530 976 Pfam Cullin family 701 879 IPR001373 GO:0006511|GO:0031625
Bda11g00530 976 Pfam Cullin family 25 648 IPR001373 GO:0006511|GO:0031625
Bda11g00530 976 ProSitePatterns Cullin family signature. 949 976 IPR016157 GO:0006511|GO:0031461|GO:0031625
Bda11g00530 976 SMART Cullin_Nedd8_2 903 970 IPR019559 -
Bda11g00530 976 SMART Cullin_Nedd8_2 672 726 IPR019559 -
Bda11g00530 976 PANTHER CULLIN 713 975 IPR045093 -
Bda11g00530 976 SUPERFAMILY Winged helix DNA-binding domain 891 976 IPR036390 -
Bda11g00530 976 Gene3D Cullin Repeats 142 263 - -
Bda11g00530 976 ProSiteProfiles Cullin family profile. 390 620 IPR016158 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00530 K03347 CUL1, CDC53; cullin 1 - rcu:8262419 1335.47
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda08g00287 Bda11g00530 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g00530 Bda-Chr11:5569311 Bda11g01210 Bda-Chr11:12452977 6.63E-06 dispersed
Bda11g00530 Bda-Chr11:5569311 Bda08g00287 Bda-Chr8:2981416 1.66E-173 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g309 . . . Bda08g00287 . . . Bma05g01038 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa06g01532 . . . Blo07g00176 Bda11g00530 . Bpe05g00840 Bpe13g00660 . Bma06g01505 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001518 2 4 1 2 2 2 3 2 2 2 2 2 2 2 2 3 2 3 3 2 2 2 2 2 3 2 2 7 3 2 72
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g00530 Bda_Chr11 FPKM 5.160853 5.870836 0.53603 0.0 1.654228 0.0 0.806195 0.0 0.0