Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00550 ATGGCTTCGATGGTTGCCAAGCCCAGTTGTAATAACAGTGCTCATGCTTCTTCTTCATTGACTGTCCAAGAAATCGGAAGTAGAAACAAGAGGAAATTTCGGGCTGATCTGCCTTTAGATGACTTGAATAAGATGAATCCCTTATCTCAAAAGGAATGCTCTAACTATGAGTTTTCGGCAGAGAAACCGGAAGTAATCTCAAGTCATGGGCACTCTAGTGCTTGTGATCTATGCAGTGTTCGCCAAGATCATTTTGATGGATTTAAACTTGATTTTGGATTATCCAATTGTGAAAATCAAATTGATGTCAACCCTAGGTGGCCTAGAGAGGACTTGGAGACAGATGAATTCCAAGATGCTGATTGGAGTGATTTTACCGAAGCTGAGCTGGAAGAACTTGTTTTGATTAATTTAAGCACCATTTTCAAGGGTGCAATCAAGAAAATTGTTGCTTGTGGCTACACTGAAGAAGCTGCAACAAAAGCTGTCTCAAGGTCTGGCATCTGTTATGGTAGTAAAGACACTGTGTCAAATATAGTGGATAATGGCTTGGCGTTTCTTAACAGTGGGCAGGACATTGATTATTCAAGGGAACATCTCTTCGAAGATCTACAGCAACTGGAGAAATATATACTTGCAGAAATGGTTTGTGTTCTTCGAGAGGTTAGACCATTCTTCAGCAATGGGGATGCTATGTGGTGCTTATTAATATCCGACATGAATGTGTCTCATGCATGTGCAGTGGATGGTGATTTTTTTGGTACTTTGGTCGCTGATGGGAATTCACCCAGTCAGGTGACAAAGAGCTCTGAGAATTCTAGTAAGACAAATCTTCCTATCACATGTTCTCATAGCCCTCAATCTGAAGGCGCGGGATTTTCAAATAATTCAAAGTCAAAGAATTCGCTAGTTAATAGTGGACAGACAATGGATGAAGACGGCATTAACTCCACATCCGATAGTGTGGACAATAAACATTTTAGTGCAGCGGGTTCGTCTTCATTCGCATCTGAAGCAAAGATTGGGAGCAGCAAAAAGTTTCAATCTAATACTGCTAAAAGAGAGTATATACTTCGGCAGAAATCACTTCATATGGAGAAAAACTATCGAACCTATGGATCTAAAGGATCTTCAAGAACAGGGAAGCTGAGTGGCATGGGTAGTTTGATCTTGGATAAGAAATTAAAGGCTGTTTCTCACTCTACATCAATAAATATAAAGAGCGCTTCGTTAAAAATATCGGAGCCTGCTGATACTGAACTCTCTCTTTCTTTGCCAACAAAATGTGATACTGCTTCATTGCCCATTAGCTGTAATGAAACTTCTAATGTTGGTCATGCTGGGAGGCAATTTGACAAGTCTCTTAGGCGGTGGGTTCCTCATGAAAAGAAAGATGACATGATTCTAAAGCTGGTTCCTAGAGTGCGAGAACTACAAACTCAACTCCAAGAATGGAATGAGTGGGCCAATCAAAAGGTTATGCAAGCTGCTCGTAGACTCGGTAAGGATAAGACTGAACTTAAGACTCTAAGACAAGAGAAAGAAGAAGTTGAAAGGCTGAAAAAAGAGAAGCAGACTCTGGAAGAAAATACAATGAAAAAGCTTTCGGAAATGGAAAATGCATTGTGCAAGGCTAGTGGGCAGGTTGAATTAGCTAATTCTGCAGTTCGCAGGCTTGAGATAGAGAATGTTTCACTGAGGCGAGCGATGGAGGATGCAAAATTGCGTGCTGCAGAAACAGCTGCTAACTGCCAGGAGGTATCAAAGAGAGAGAAGAAGACACTAATGAAATTTAAATCTTGGGAAAAACAGAAAACTGTGTTGCAGGAAGAACTCGTGGCTGAAAAACGCATATTAACGCAGCTGTTACTTGAACTAGAAGAAGCTAGCAATCTCCAGGAGCAGCAGGAGGCGAAATGGAAATTCGAAGAGCAAGCCCGACTTCAACTATTTACGCAAGCAAGTTCGATTAGAAAGGAAAGAGAACAATTCGAGGCTTCGGTGGAAGAAAAGCAAGACATAATCAGACTAAAAGCAGAAAACAATCTTCAAAAGTACAAAGATGATATCCAAAAGCTAGAAAAAGAAATTTCCCTGCTGAGACGGAAGAGTGATTCTTCGAGAATTGCGGCCCTGAAAAGAGGAATCGACGGAAGCTATGCCAGCATACTTTCCGAGTCCAGAAATACCACCGATCACAAGGAGACTCGGGACCGTAAATTGGCTTCGTCGGTGAATAATCTCCAACCCCAATCAGGGACAGGATCGGTAAAACGAGAACACGAGTGTGTGATGTGCCTTACGGAGGAGATGTCCGTGGTTTTTCTGCCGTGTGCTCACCAGGTGGTCTGTAGAACCTGCAATGAACTTCATGAAAAGCAGGGAATGAAGGATTGCCCTTCGTGTCGGAGCCCCATACAGCAGCGAATTTCTAGTTCTCTCTTCCTCGCTGAGGTTGGACTGAATTTGTCCGAGTTCAAGGAAAAGGACTGGGATATCTGCGGGGTGGAGATTACTGATTATGCAGTTGAGGTGAATCAATGTCCTTTCAAGTGGAGGTGCGAGGTCATCTACGATGATGCCTTCAAAATTTCTGAAACTTGTGGTTGTTCGTTTATATTTTTTTTGGCGTTTGCATTTTGCTACCATATAAATAAGGGATTCTCCGATAGATCCCGCGATGGTAGCAGGTTTTTCGTGGCTAGGACAGTGGATTGTCCTCATATTTTGCTTGGAGGTTTAAATTCTCTAGAGATGTCAGACTACTCTTATGAGAGATGGAGAGACATTGTCAAGTATTATGAGCAAATAGGAAAGCCTACTCCAAAAGCGAAGTCTGAGCTGAAAAGATCGGCGGTCGCAGATCACGAATCGGGAGAAAGCAAACTCAGTGAGGTTCGAACAAGTTCTGGGATGTTTATACATAAAGCCAAGGATCCAATAATTGCTGGTATAGAGGAAAAAATTGCAACATGGACCTTTCTTCCAAAAGGTATGAACTTGCAATGCACCCCGACAACACATATTTTCGCCCCGATTCGTCCAGAGAACGGGGAAGACATACAAGTCTTAAGGTATGAGCATGGCCAGAAGTATGAACCACATTATGATTACTTTACGGACAAGATTAACATCGCTAGGGGAGGTCATCGCATAGCAACTGTTCTCATGTATCTTTCTGATGTGACCAAAGGGGGTGAGACAGTGTTTCCTTCAGCTCAGGAACCGCTGAGTCGGAAGGCTTCGGAAATAAAGGACCTATCTGAATGTGCAAAGAAAGGAATTGCAGTAAAACCAAGAAGGGGAGATGCACTTCTCTTCTTCAGTCTCCACCCAAAAGCTCAGCCGGATATCAACAGTCTGCATGCCGGATGTCCGGTGATCAACGGCGAAAAGTGGTCGGCAACAAAATGGATTCACGTAGATTCATTTGACAAGAGGGTAGGAGATGGTGAAAATTGCAGTGATCTGAATGAAAGCTGTGAGAGATGGGCTGCTCTTGGAGAATGCACCAAAAATCCAGAATACATGGTTGGATCTCTTCATCTTCCTGGCTACTGTAGGAAGAGTTGCAGATCATGTTGA 3585 42.71 MASMVAKPSCNNSAHASSSLTVQEIGSRNKRKFRADLPLDDLNKMNPLSQKECSNYEFSAEKPEVISSHGHSSACDLCSVRQDHFDGFKLDFGLSNCENQIDVNPRWPREDLETDEFQDADWSDFTEAELEELVLINLSTIFKGAIKKIVACGYTEEAATKAVSRSGICYGSKDTVSNIVDNGLAFLNSGQDIDYSREHLFEDLQQLEKYILAEMVCVLREVRPFFSNGDAMWCLLISDMNVSHACAVDGDFFGTLVADGNSPSQVTKSSENSSKTNLPITCSHSPQSEGAGFSNNSKSKNSLVNSGQTMDEDGINSTSDSVDNKHFSAAGSSSFASEAKIGSSKKFQSNTAKREYILRQKSLHMEKNYRTYGSKGSSRTGKLSGMGSLILDKKLKAVSHSTSINIKSASLKISEPADTELSLSLPTKCDTASLPISCNETSNVGHAGRQFDKSLRRWVPHEKKDDMILKLVPRVRELQTQLQEWNEWANQKVMQAARRLGKDKTELKTLRQEKEEVERLKKEKQTLEENTMKKLSEMENALCKASGQVELANSAVRRLEIENVSLRRAMEDAKLRAAETAANCQEVSKREKKTLMKFKSWEKQKTVLQEELVAEKRILTQLLLELEEASNLQEQQEAKWKFEEQARLQLFTQASSIRKEREQFEASVEEKQDIIRLKAENNLQKYKDDIQKLEKEISLLRRKSDSSRIAALKRGIDGSYASILSESRNTTDHKETRDRKLASSVNNLQPQSGTGSVKREHECVMCLTEEMSVVFLPCAHQVVCRTCNELHEKQGMKDCPSCRSPIQQRISSSLFLAEVGLNLSEFKEKDWDICGVEITDYAVEVNQCPFKWRCEVIYDDAFKISETCGCSFIFFLAFAFCYHINKGFSDRSRDGSRFFVARTVDCPHILLGGLNSLEMSDYSYERWRDIVKYYEQIGKPTPKAKSELKRSAVADHESGESKLSEVRTSSGMFIHKAKDPIIAGIEEKIATWTFLPKGMNLQCTPTTHIFAPIRPENGEDIQVLRYEHGQKYEPHYDYFTDKINIARGGHRIATVLMYLSDVTKGGETVFPSAQEPLSRKASEIKDLSECAKKGIAVKPRRGDALLFFSLHPKAQPDINSLHAGCPVINGEKWSATKWIHVDSFDKRVGDGENCSDLNESCERWAALGECTKNPEYMVGSLHLPGYCRKSCRSC 1194
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5719640 5739365 - Bda005286.2 Bda11g00550 15658

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00550 1194 PANTHER OS05G0141500 PROTEIN 415 812 - -
Bda11g00550 1194 PANTHER OS05G0141500 PROTEIN 9 415 - -
Bda11g00550 1194 Pfam 2OG-Fe(II) oxygenase superfamily 1021 1140 IPR044862 -
Bda11g00550 1194 Gene3D q2cbj1_9rhob like domain 931 1141 - -
Bda11g00550 1194 Pfam Zinc finger, C3HC4 type (RING finger) 760 808 - -
Bda11g00550 1194 Coils Coil 500 537 - -
Bda11g00550 1194 SUPERFAMILY RING/U-box 758 809 - -
Bda11g00550 1194 PANTHER OS05G0141500 PROTEIN 415 812 IPR046934 -
Bda11g00550 1194 PANTHER OS05G0141500 PROTEIN 9 415 IPR046934 -
Bda11g00550 1194 Coils Coil 609 639 - -
Bda11g00550 1194 Pfam Family of unknown function (DUF6592) 138 248 IPR046527 -
Bda11g00550 1194 ProSiteProfiles ShKT domain profile. 1154 1194 IPR003582 -
Bda11g00550 1194 MobiDBLite consensus disorder prediction 1 23 - -
Bda11g00550 1194 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 738 812 IPR013083 -
Bda11g00550 1194 MobiDBLite consensus disorder prediction 727 754 - -
Bda11g00550 1194 MobiDBLite consensus disorder prediction 263 323 - -
Bda11g00550 1194 Coils Coil 676 710 - -
Bda11g00550 1194 ProSiteProfiles Zinc finger RING-type profile. 763 803 IPR001841 -
Bda11g00550 1194 Coils Coil 549 590 - -
Bda11g00550 1194 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 1017 1141 IPR005123 -
Bda11g00550 1194 SMART p4hc 922 1140 IPR006620 GO:0005506|GO:0016705|GO:0031418
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00550 - - - vvi:100249384 1000.35
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01249 Bda-Chr1:47915732 Bda11g00550 Bda-Chr11:5719640 6.42E-86 dispersed
Bda05g00322 Bda-Chr5:46498493 Bda11g00550 Bda-Chr11:5719640 1.49E-11 dispersed
Bda05g00325 Bda-Chr5:46622965 Bda11g00550 Bda-Chr11:5719640 1.50E-11 dispersed
Bda06g01289 Bda-Chr6:43470979 Bda11g00550 Bda-Chr11:5719640 4.43E-21 dispersed
Bda11g00550 Bda-Chr11:5719640 Bda13g00154 Bda-Chr13:2019966 5.52E-111 dispersed
Bda13g00152 Bda-Chr13:2003307 Bda11g00550 Bda-Chr11:5719640 7.73E-10 transposed
Bda11g00550 Bda-Chr11:5719640 Bda13g00150 Bda-Chr13:1990607 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g389 . . . . . Bpe14g01160 . . Cmo08g01163 Cmo17g00279 Cma06g01451 Cma14g01654 Car06g01253 . . Cpe08g00224 Cpe03g01399 Bhi01g00918 . . . . . . Cla06g00523 Cam06g0562 Cec06g0562 Cco06g0569 Clacu06g0550 Cmu06g0546 Cre06g1315 Cone14ag0801 Cone15ag0800 . . Lsi05g01486 . Chy11g01452 Cme06g00675 Blo02g00567 Blo07g00195 Bda11g00550 . . Bpe13g00639 . . . Cmo06g01452 Cmo14g01700 Cma08g01191 Cma17g00291 Car08g01068 Car17g00267 Cpe12g00243 Cpe17g00107 Bhi12g01764 . . . . . . . . . . . . . . Csa03g01400 Chy06g00643 Cme11g01957
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004013 2 1 1 2 2 1 2 1 0 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 7 3 0 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g00550 Bda_Chr11 FPKM 35.370564 33.735748 43.769775 43.346153 24.062902 26.89049 25.98683 37.927994 40.744068