Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00553 ATGGGCTGCGTACATGGAAAATGTTGCAGTCGGTACCCTTCCTCGTCGGACGGAGACTCGCCAGAATTGCTAGAAACCGGTCCTCTTAGTGTGGTAGGGAAACACATTTTGACAGAGAGATCGTTGGAGACTGTTTCTGTTCCGTCGCACGATTACCATTTGGAATTCTCTGTTCTTTCGCACCGAGGCTATTACCCAGATTCCCCCGATAAACAAAACCAAGATAGTTTCTGTGTAAGAACTCAAATCCAAGGTGACCCGAGTATTCATTTCTTCGGAGTTTTTGATGGGCACGGCCAATTCGGTGCAGAGTGTTCTAATTTCGTCAAAGATAGGCTTGTGGAGATACTATCAAACGACCCCACATTGTTGAACGATCCAGTAAAAGCCTTCAATCAGGCATTTTCAACGACGAACCATGAACTACACGAAAGTGAAATTGACGATTCATTAAGTGGCACGACCGCAATCACTGCACTTGTGATCGGAGACACCCTTTTCGTTGCAAATGTGGGTGATTCTAGGGCGGTGATTGCCGTTAAAGAAGGGAATCAAATTATCGCGGAAGATCTTTCAAGAGATCAAACACCATTTAGGAAGGATGAGTATAAGAGGGTAAAGCTCTGTGGGGCAAGGGTTTTGAGTGTCGATCAAGTGGAAGGATTGAAGGATCCTGATGTTCAGAGTTGGGGTGATGAAGAAAGTCAAGGGGGTGATCCTCCGCGCTTGTGGGTCCAGGGCGGGATGTACCCCGGGACTGCATTTACAAGGAGTGTGGGAGATAGTATAGCTGAGAGCATTGGTGTTATTGCAGAGCCTGAAGTGTCAATGATTCATCTGACTGTTAATCATCTTTTCTTTGTTGTGGCAAGTGATGGAGTTTTTGAGTTCCTCTCTAGCCAAACTGTCGTCGACATGGCGTCAAGATATACAGATCCTCGCGATGCCTGCTCTGCAATAGCTGGAGAATCGTACAGACTATGGCTGGAACATGAAAACCGGACTGATGATATAACGATCATTGTCATTCATATCAAAGGCTTGTCTAATTCAGGTGCTATTGTTGGTGTTGCCTCTAGCACGATGAGAACTAGGCCAGGGAAAGAAACATCGGAGTTATCCACTACCATTGGTGGGTCCGAATTTTATCGTTCAGCAAGAAGTGACTTTTCCGATCTACCAACTTCTCATCGTGTGACGATAATGAATCGTAGCGTTATACCATCTCCAATGCATCACAGACCTTTGGAAGTGGATGTCGGGTAG 1266 45.81 MGCVHGKCCSRYPSSSDGDSPELLETGPLSVVGKHILTERSLETVSVPSHDYHLEFSVLSHRGYYPDSPDKQNQDSFCVRTQIQGDPSIHFFGVFDGHGQFGAECSNFVKDRLVEILSNDPTLLNDPVKAFNQAFSTTNHELHESEIDDSLSGTTAITALVIGDTLFVANVGDSRAVIAVKEGNQIIAEDLSRDQTPFRKDEYKRVKLCGARVLSVDQVEGLKDPDVQSWGDEESQGGDPPRLWVQGGMYPGTAFTRSVGDSIAESIGVIAEPEVSMIHLTVNHLFFVVASDGVFEFLSSQTVVDMASRYTDPRDACSAIAGESYRLWLEHENRTDDITIIVIHIKGLSNSGAIVGVASSTMRTRPGKETSELSTTIGGSEFYRSARSDFSDLPTSHRVTIMNRSVIPSPMHHRPLEVDVG 421
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5765106 5768703 + Bda005290.3 Bda11g00553 15661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00553 421 Pfam Protein phosphatase 2C 83 321 IPR001932 -
Bda11g00553 421 MobiDBLite consensus disorder prediction 224 243 - -
Bda11g00553 421 ProSitePatterns PPM-type phosphatase domain signature. 91 99 IPR000222 GO:0043169
Bda11g00553 421 SUPERFAMILY PP2C-like 43 347 IPR036457 -
Bda11g00553 421 CDD PP2Cc 61 345 IPR001932 -
Bda11g00553 421 PANTHER CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE 29 417 - -
Bda11g00553 421 Gene3D - 40 347 IPR036457 -
Bda11g00553 421 ProSiteProfiles PPM-type phosphatase domain profile. 55 345 IPR001932 -
Bda11g00553 421 SMART PP2C_4 55 343 IPR001932 -
Bda11g00553 421 PANTHER PROTEIN PHOSPHATASE 2C AND CYCLIC NUCLEOTIDE-BINDING/KINASE DOMAIN-CONTAINING PROTEIN 29 417 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda09g01137 Bda-Chr9:42073545 Bda11g00553 Bda-Chr11:5765106 5.66E-139 dispersed
Bda11g00553 Bda-Chr11:5765106 Bda01g00652 Bda-Chr1:33517281 2.41E-30 dispersed
Bda11g00553 Bda-Chr11:5765106 Bda13g00147 Bda-Chr13:1964013 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00553 - - zju:107423247 636.336