Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bda11g00562 | ATGTCTCATATTGCTGTGGAGAGAAACAGACGAAGACAGATGAATGAACATCTCAAAGTTCTTCGATCTTTAACCCCATGCTTCTACATCAAAAGGGGAGATCAAGCGTCGATAATAGCAGGGGTGATAGATTTCATCAAAGAGCTACACCAAGTTCTGCAATCGTTAGAATCCAAAAAACGAAGGAACAGTCTAAGCCCTAGCCCTAATCCAAGTCCAAAGCCACAACAGTCAAATAACTCTCAGCTCGATCCTCCATTCGGGTCCGAAAGTGCAAAGGAAATCGCAGGAGCAAGCTGCAACTCGGCCATTGCAGACGTCGAAGCTAGGATTTCTGGACCAAACGTGGTGTTGAAGATCATCTGCCGACGATTCCCCGGTCAACTCGTGAGGATTGTAAGCGTTTTAGAGAAACTCTCCTTTGAAATCCTCCATCTCAACATCAGTACCATGGAAGATACTGTTCTTTACTCTTTTCTCATAGGCCTGGAATGTGAGCTGAGCCTGGAAGAACTAGCTATGGAAGTTCAGCAAAGTTTTTCGTCTGAACACATCTACGTCAACAAAATTTAG | 573 | 44.33 | MSHIAVERNRRRQMNEHLKVLRSLTPCFYIKRGDQASIIAGVIDFIKELHQVLQSLESKKRRNSLSPSPNPSPKPQQSNNSQLDPPFGSESAKEIAGASCNSAIADVEARISGPNVVLKIICRRFPGQLVRIVSVLEKLSFEILHLNISTMEDTVLYSFLIGLECELSLEELAMEVQQSFSSEHIYVNKI | 190 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 5822685 | 5823765 | - | Bda005299.1 | Bda11g00562 | 15670 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bda11g00562 | 190 | SUPERFAMILY | ACT-like | 115 | 172 | IPR045865 | - | |
| Bda11g00562 | 190 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 1 | 49 | IPR011598 | GO:0046983 | |
| Bda11g00562 | 190 | PANTHER | TRANSCRIPTION FACTOR FAMA | 1 | 188 | IPR044283 | GO:0003700|GO:0010052 | |
| Bda11g00562 | 190 | SMART | finulus | 4 | 55 | IPR011598 | GO:0046983 | |
| Bda11g00562 | 190 | PANTHER | TRANSCRIPTION FACTOR MUTE | 1 | 188 | - | - | |
| Bda11g00562 | 190 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 1 | 71 | IPR036638 | GO:0046983 | |
| Bda11g00562 | 190 | MobiDBLite | consensus disorder prediction | 58 | 92 | - | - | |
| Bda11g00562 | 190 | Pfam | Helix-loop-helix DNA-binding domain | 2 | 49 | IPR011598 | GO:0046983 | |
| Bda11g00562 | 190 | Gene3D | - | 1 | 64 | IPR036638 | GO:0046983 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bda11g00398 | Bda-Chr11:4316949 | Bda11g00562 | Bda-Chr11:5822685 | 2.94E-40 | dispersed | |
| Bda11g00562 | Bda-Chr11:5822685 | Bda13g00490 | Bda-Chr13:5769953 | 2.22E-51 | dispersed | |
| Bda11g00562 | Bda-Chr11:5822685 | Bda05g00110 | Bda-Chr5:5386189 | 1.23E-52 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 16604 | PF00010 | HLH | 4.20E-08 | No_clan | Bda | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bda11g00562 | - | - | vvi:100256370 | 263.462 |