Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00584 ATGGAGCAATCTAGGATGATGAAGACGACTCTGATCTTCGTCCTGGTGATGATGCTCTGGGCTGGAGCCGAGTCGCAGTCTTGTACGAACGTGCTAATCAGTCTGTCTCCGTGCTTAAACTACATTACTGGAAACTCTTCGACCCCATCTTCTGGGTGCTGCTCGCAGCTGGCAACCGTCGTCCGGTCACAGCCTCAATGCCTATGCCAGGTCCTCAACGGCGGCAGTTCGTCGCTTGGGCTCAACATTAACCAAACTCAGGCTCTGGCCCTACCCTCCGCCTGCAATGCTAAGTCTGCTCTAATGGCGAAAAATGGCTCTGCGTGGTGTGCGGAGGAAGGTTGTAGAAGAAGATCGATATCATCCTATTTCAGTTGTCCGAAAGTATTAACTGGTTTTTCAGTGAAGAGCCTGATGGAAATGGAAACTCAGACGAGTCCGACTTCCATACTCGATACCAAACCATTTTCTTGTTTGATTAATCCTTTCTGGTTCGAAACGAAGACCACCAAAACATCGCCAACCGAAAGTAGACGCCATTGGGACAAGATGGATTCGAAGAGAATAGGCCTCGGCATTGTTGATGATCTTAATGATCTAAGTTTTCCAATGGTTCTGTTCGGTTCGCACCTTAAGATTCGAAGCCCTTCTCTCTACCCTTCATTTCCTTCTCCTCCAGAACCTCCGATATCATCAGCTGATTTTGGCACCAAGACTGAAAGTTCTCGAGTGGGATCTTTTTCGCCGAAAAAATCCATGACTCCTGCGAAGAAATCGGATTCTGGGTCGTTAGATTCCGGCCTGACGCCGACTTCTCGGGCTTTCACCAGGTGTCTCTCTGCTACTGAAATGGAGCTTTCTGAGGAATATACTTGCGTGATTTCTCATGGACCAAATCCCAGAACTACTCATATATTTGACGACTGTATTGTGGAGAGCTGCACTGGTTTATTCTCTGCTTCTGCGAAGAAGAAGATGAATAAGGATCCCCATGAAAACTTCCTCAGCTTCTGTTTCACTTGCAAGAAGAGTCTTGGGCAAGGAAGAGACATTTACATGTACAGAGGCGAGCAATCATTTTGCAGCGAAGAATGCCGATACCAAGAGATGATCACGGAGGATGAAATCAATAGAGGAGAGCTTGACTAA 1149 47.17 MEQSRMMKTTLIFVLVMMLWAGAESQSCTNVLISLSPCLNYITGNSSTPSSGCCSQLATVVRSQPQCLCQVLNGGSSSLGLNINQTQALALPSACNAKSALMAKNGSAWCAEEGCRRRSISSYFSCPKVLTGFSVKSLMEMETQTSPTSILDTKPFSCLINPFWFETKTTKTSPTESRRHWDKMDSKRIGLGIVDDLNDLSFPMVLFGSHLKIRSPSLYPSFPSPPEPPISSADFGTKTESSRVGSFSPKKSMTPAKKSDSGSLDSGLTPTSRAFTRCLSATEMELSEEYTCVISHGPNPRTTHIFDDCIVESCTGLFSASAKKKMNKDPHENFLSFCFTCKKSLGQGRDIYMYRGEQSFCSEECRYQEMITEDEINRGELD 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5987861 5993002 - Bda005325.1 Bda11g00584 15692

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00584 382 ProSiteProfiles Zinc finger FLZ-type profile. 333 377 IPR007650 -
Bda11g00584 382 MobiDBLite consensus disorder prediction 234 268 - -
Bda11g00584 382 MobiDBLite consensus disorder prediction 222 268 - -
Bda11g00584 382 Pfam Probable lipid transfer 19 103 IPR016140 -
Bda11g00584 382 PANTHER FCS-LIKE ZINC FINGER 8 98 377 - -
Bda11g00584 382 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 26 99 IPR036312 -
Bda11g00584 382 Pfam zinc-finger of the FCS-type, C2-C2 325 375 IPR007650 -
Bda11g00584 382 PANTHER FCS-LIKE ZINC FINGER 8 98 377 IPR044593 -
Bda11g00584 382 SMART aai_6 28 115 IPR016140 -
Bda11g00584 382 CDD AAI_LTSS 35 96 - -
Bda11g00584 382 Gene3D - 25 101 IPR036312 -
Bda11g00584 382 PRINTS Plant phospholipid transfer protein signature 27 43 IPR000528 GO:0006869|GO:0008289
Bda11g00584 382 PRINTS Plant phospholipid transfer protein signature 48 62 IPR000528 GO:0006869|GO:0008289
Bda11g00584 382 PRINTS Plant phospholipid transfer protein signature 82 99 IPR000528 GO:0006869|GO:0008289
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00584 - - - ming:122085454 289.271
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda11g00584 Bda13g00111 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g00286 Bda-Chr5:44696598 Bda11g00584 Bda-Chr11:5987861 4.43E-41 dispersed
Bda08g00050 Bda-Chr8:402702 Bda11g00584 Bda-Chr11:5987861 1.03E-11 dispersed
Bda09g01002 Bda-Chr9:39933766 Bda11g00584 Bda-Chr11:5987861 1.05E-13 dispersed
Bda09g01167 Bda-Chr9:42495632 Bda11g00584 Bda-Chr11:5987861 2.16E-11 dispersed
Bda10g00575 Bda-Chr10:39739325 Bda11g00584 Bda-Chr11:5987861 4.03E-50 dispersed
Bda11g00584 Bda-Chr11:5987861 Bda13g00111 Bda-Chr13:1515515 5.91E-53 dispersed
Bda13g00465 Bda-Chr13:5603439 Bda11g00584 Bda-Chr11:5987861 9.64E-13 dispersed
Bda11g00584 Bda-Chr11:5987861 Bda11g00585 Bda-Chr11:5994528 2.50E-09 tandem
Bda06g01103 Bda-Chr6:39205678 Bda11g00584 Bda-Chr11:5987861 6.90E-10 transposed
Bda09g00284 Bda-Chr9:3513558 Bda11g00584 Bda-Chr11:5987861 2.47E-12 transposed
Bda13g01907 Bda-Chr13:43428114 Bda11g00584 Bda-Chr11:5987861 2.13E-07 transposed
Bda11g00584 Bda-Chr11:5987861 Bda13g00110 Bda-Chr13:1513991 1.23E-12 wgd
Bda11g00584 Bda-Chr11:5987861 Bda03g00878 Bda-Chr3:7603699 1.56E-33 wgd
Bda11g00584 Bda-Chr11:5987861 Bda08g00241 Bda-Chr8:2394999 1.06E-16 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g527 . . . . . . . . . . Cma06g01397 . Car06g01204 . Sed02g1301 . . Bhi01g00791 Tan10g0822 Cmetu01g2184 . Hepe05g1566 . Lcy11g1562 . . . . . . . . . . . . . . Cme06g00596 . Blo07g00223 Bda11g00584 Bda13g00111 . Bpe13g00600 Bma02g00835 . . . . . . . . . . . . . . . . . . . . . . . . Lsi09g01309 Csa03g01312 Chy06g00564 Cme01g01576
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005763 2 1 1 3 3 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g00584 Bda_Chr11 FPKM 0.734177 1.133893 1.786769 1.49381 3.597159 6.493888 6.104879 2.03553 2.134793