Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00588 ATGCTCTCAAAATCCATTGTTTCAGGTCTTCTCCGTCGACCATGTTCTCGAAGAAATACCATCATCAATGCAAAGGGTTTCTACTTCTCAAGCGACCCTCTCTGCACCATTGTCGATTCTTCCGATATCAGCGAGTCCCCTGAGCTTCCTGACTGGGTTTACTTGTTCGACACCAGAGACCCTCAATCTGCACCTTCAGACGATGATAACTTCGTCATACCTTCATTGGCCGACTGGATCGAAACTCAGAAGGTTGAAGATCATGGTAAACTAGTCAGACTCTCGCTCGGCGAGGACAAAGATAGCGAAATCGACCAGATCAGTAGTATTCTAAAGAAACGATACTCCACACCTGACTATGTCGTCGAAGCTCTAAATGGATGTCCTTTTGACGCATCAAGTAGCTTGGTTGAGCGGCTTCTGAGTAAATTTAGCAATGATTGGATACCGGCTTTAGGCGTTTTCAATTGGGCAAAAGCACAAACAGGTTACAGGCATTCCCCTGAACTCTACAACTCCATGGTTGATGTATTGGGAAAAGCGAAAAAGTTTTGTCTCATGTGGGAATTATTAGAAGAAATGAAAATTTTAGAAGGCTACGTTACTCTGACCACAATGAAGAAGATCATTCGGAGACTTTCGAGGGCTGGTAAGTATGACGAATCGATAGAAACATTTCGAGGGATAGAGAAACATGGTCTGAGAAAGGATACTTCAGCTATGAATGTTTTGATGGATGCATTAGTGAAGGTTGACAATGTTGAGAAAGCTAATGAAATTTTTGTAGAGTTTAAGAATTCAGTACCTCCGGATTTAAGCTCTTTCAATATTCTGATACATGGCTGGTGCAAAGCTAAGAAGCTAGATGAAGCATGGAAGACTATGGAGGAGATGGAGAAACAAGGCTTTCATCCCGACGTGGTTTCTTACACGGCTTTCATCGAAGCTTCCTGTCGAGAAAAGGATTTTCGGAGAGTAAATCGGATTCTTGAAGAAATGAAAGTGAAAGGATGCAAACCCAATACTGTAACTTATACTATTATAATGCATGCATTAGGGAAGGCAAAGCAGATAAATGACTCATTGAACATATATGAGAAGATGAAAGCAGATGGCTGTGTACCTGATTCTTCATTTTACAGTTCTTTGATATTTGTTCTTGGTAAAGCTAGTAGACTCAAAGATGCTTTGGAGGTGTTCGATGAAATGCCTAACCAAGGACTTACTCCTGATGTGATGACATATAATACTCTGATTGCCTGTGCCTGTGACAATGAACAAGAAGAGACGGCTCTTAAATTGTTTCGGAAAATGGAAGAGAATTCGTGCAAGCCGGATCTGAAAACTTACCACCCGTTGCTGAAAATGTGTTGCCGAAAGAAGAGAATGAAGGTGTTAAGGTTTTTGATAGAGCACATGTTTAAGAACGACGTAAGCATCGAAGCCGGAACCTATGCGATCGTGATAACCGGGCTGTGTAAGATCGGGAAACCGGAAATGGGTTGTATGTTGTTCGAAGAAATGGTGTCAAAGGGTATGGTTCTTAAGGAATCCACGTATAAGAAATTAAAGGAAATGCTTGAGAGTAAGAACAAGGTTGAAGAAATGGAACGCATGGAGAAGTTGATGGCACAAATTAGAAAGACATGA 1650 41.39 MLSKSIVSGLLRRPCSRRNTIINAKGFYFSSDPLCTIVDSSDISESPELPDWVYLFDTRDPQSAPSDDDNFVIPSLADWIETQKVEDHGKLVRLSLGEDKDSEIDQISSILKKRYSTPDYVVEALNGCPFDASSSLVERLLSKFSNDWIPALGVFNWAKAQTGYRHSPELYNSMVDVLGKAKKFCLMWELLEEMKILEGYVTLTTMKKIIRRLSRAGKYDESIETFRGIEKHGLRKDTSAMNVLMDALVKVDNVEKANEIFVEFKNSVPPDLSSFNILIHGWCKAKKLDEAWKTMEEMEKQGFHPDVVSYTAFIEASCREKDFRRVNRILEEMKVKGCKPNTVTYTIIMHALGKAKQINDSLNIYEKMKADGCVPDSSFYSSLIFVLGKASRLKDALEVFDEMPNQGLTPDVMTYNTLIACACDNEQEETALKLFRKMEENSCKPDLKTYHPLLKMCCRKKRMKVLRFLIEHMFKNDVSIEAGTYAIVITGLCKIGKPEMGCMLFEEMVSKGMVLKESTYKKLKEMLESKNKVEEMERMEKLMAQIRKT 549
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6017382 6019031 - Bda005329.1 Bda11g00588 15696

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00588 549 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 306 340 IPR002885 -
Bda11g00588 549 Pfam PPR repeat 171 195 IPR002885 -
Bda11g00588 549 Pfam PPR repeat 484 512 IPR002885 -
Bda11g00588 549 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 341 375 IPR002885 -
Bda11g00588 549 Pfam PPR repeat family 236 284 IPR002885 -
Bda11g00588 549 Pfam PPR repeat family 410 459 IPR002885 -
Bda11g00588 549 Gene3D Tetratricopeptide repeat domain 362 549 IPR011990 GO:0005515
Bda11g00588 549 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 481 515 IPR002885 -
Bda11g00588 549 Coils Coil 529 549 - -
Bda11g00588 549 Pfam Pentatricopeptide repeat domain 295 354 IPR002885 -
Bda11g00588 549 SUPERFAMILY Pseudo ankyrin repeat-like 313 478 - -
Bda11g00588 549 TIGRFAM PPR: pentatricopeptide repeat domain 308 342 IPR002885 -
Bda11g00588 549 TIGRFAM PPR: pentatricopeptide repeat domain 343 377 IPR002885 -
Bda11g00588 549 TIGRFAM PPR: pentatricopeptide repeat domain 414 446 IPR002885 -
Bda11g00588 549 TIGRFAM PPR: pentatricopeptide repeat domain 380 412 IPR002885 -
Bda11g00588 549 TIGRFAM PPR: pentatricopeptide repeat domain 274 307 IPR002885 -
Bda11g00588 549 TIGRFAM PPR: pentatricopeptide repeat domain 484 514 IPR002885 -
Bda11g00588 549 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MITOCHONDRIAL 38 548 - -
Bda11g00588 549 Gene3D Tetratricopeptide repeat domain 266 336 IPR011990 GO:0005515
Bda11g00588 549 Gene3D Tetratricopeptide repeat domain 129 265 IPR011990 GO:0005515
Bda11g00588 549 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 411 445 IPR002885 -
Bda11g00588 549 Pfam PPR repeat 371 403 IPR002885 -
Bda11g00588 549 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 38 548 - -
Bda11g00588 549 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 271 305 IPR002885 -
Bda11g00588 549 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 376 410 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00588 - - - csv:101223103 683.715
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda09g00467 Bda-Chr9:6077795 Bda11g00588 Bda-Chr11:6017382 1.73E-40 dispersed
Bda10g00655 Bda-Chr10:40706818 Bda11g00588 Bda-Chr11:6017382 6.71E-08 dispersed
Bda10g00963 Bda-Chr10:43916408 Bda11g00588 Bda-Chr11:6017382 2.46E-115 dispersed
Bda11g00588 Bda-Chr11:6017382 Bda12g00662 Bda-Chr12:31965534 5.01E-62 dispersed
Bda12g00706 Bda-Chr12:33951913 Bda11g00588 Bda-Chr11:6017382 1.61E-10 dispersed
Bda15g00630 Bda-Chr15:9441141 Bda11g00588 Bda-Chr11:6017382 8.15E-40 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g533 . . . . . . . . . . . Cma14g01729 . Car14g01560 Sed08g1848 . . Bhi01g00782 Tan10g0806 Cmetu03g1308 . Hepe05g1573 . . . . . . . . . . . . . . . . . . . Bda11g00588 . . . . . . . Cmo14g01768 . . . . . . . . . . . . . Cla05g00522 Cam05g0575 Cec05g0585 Cco05g0583 Clacu05g0571 Cmu05g0541 Cre05g0610 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014430 1 1 0 0 0 1 1 1 1 1 1 1 1 0 1 1 1 0 0 1 1 1 1 1 0 0 1 1 1 0 21
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g00588 Bda_Chr11 FPKM 7.014327 6.775903 9.677219 7.548574 8.734616 9.547851 8.706205 17.545143 14.745691