Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00592 ATGGATGTGAAAGTGAATGTGATGATAAAACTTATCGAAGCAGACGCCGATTCTTTTGCGAGGAGGGCAGAAATGTACTACAAGAAAAGGCCAGAGCTAATGAAATTGTTAGAGGAAATATACCGAGCTTATCGAGCGCTGGCGGAAAGATACGATTGTGCAACTGTGGAACTTCGTCAAGCCCATCGGACGATGGCGGAGGCATTTCCAAACCAAGTCCCTTATGATCTGATCGACGAATCGCCCTCAGAAACTTCTGTTTCTGGACCCGAAGAACCTCATACTCCCGAAGTGTTACATCCAATTCGTACAGTATCAGACCTCGATGACTTGTCAATCAGCTTTCATGGAAATAGCAAAAGGGGTCGTAGACAAGTCGACGAGGATGGATTTTCTCGATTATCGTGCGAAAACCAGAATCTCGAGGGATTTGGTGACTCATCAGAGACCGAAGTTGAATATATGAAAGGAATGTTGACTAAGATAGAAGCTGAGAAAGAATCCATATTTCTTAAATACCAGAAGGCCTTAGAAAAATTATCAAATCTGGAGACTGAACTTGAAAACGCGCAACAAGAGGCTGCGAGGCTTGATCAACAAGCAAGCAAGTCCGAAATCGAGGTCAAAATATTGAAGGAAGCTCTTTCTGGAATGGAGGCAGAAAGGGATGCTAATCTTCTTCGGTATAATCAGTCTTTGGAAAGTATATCTAATCTGGAGAATCTACTGTCTCTTTCTCAGGAAGAAGCTAAAGCGCTTGATATGAGAGCAGGCAAAGCAAAAACCGAAACTCAATATCTCAGATTACAACTTTCGAGTTCAGAGTACGAAAAGGAAGCCAGTCTTCGACAGTACAAGCAATGTCTTGAGAAGATATCTCTCATGGAGGCTAAGATTTCTGCAGCTGAGGAAAATTCGAGGGTACTAAATGAGCATGTAGAAAGAGCAGAATCTGAAGTAAATTCGTTAAAGGAGACGATGGTGAAGATGGAGAGTGAAATTTCTCGGGCTCGAAACAATGTGAAAAAACTAAATGACGAGCTCCTGACAGTCTCAAATAAGTTAGACAGTGCAGAAGTAAAATATTCTCAATTGGAGGACTCAAATCGAGCCCTGCAATTAGAGGCAAACAATCTGATGGAGAAGATAACAATGAAAGATCAAGAACTTGCTCAAAGACAAGTTGAATTTGAGAAATTTCAGATCCAAATGCACGACGAACAGTCGCGGTTTAAGCAAGTTGAAACCAGTCTTCACACATTACAAGACTTGCATTCTCTATCTCAAGATAAGCAGAAAGCTCTTACCCTGGAGCTTAAAAACGGTCTTCAGATGTTGAAGGATTTGAGCATACACAAACTTTGTGTGGAGGAAGAGCTTCAAAAGGTTAAGGAAGAGAATAGGAGCCTGAAGAATCTAGAGAATGAAATTTTCAGCTTGAAGCAGATAAAACACAAACTTGAAGAAGAAGTATTTCACAAAGCAGATTATAGCAACGAGCTAGAGCAGGAAATTCACTGTTTGAGAGAAGAAATTAAGGGCATGAATGGAAGATACCAGGCCATAATGTTGGAGGTTGAATCCGTAGGTATGAATCCCGAAAGCCTCTTATCTTCTATAAAGGAATTGCAAAATGAGAATGCAAGGCTTAGAGACACCTTCGAGACGGAGCGTATCAAAGGAGAAGTTCTTTCTGCTAAGTTGAATTGTACGGAGAAAATTTCGAAAGATAATGTGACTCTTGAGGTTTCTTTAGCAGAAATGAACGGAGAGTTGGAAAAGATGAGGGCGAAGTCGAAGGACTTCCAAGAGTCATGCCATTTCCTTCAGGAAGAGAAAGCTAGTCTTGTTGCTGAAAAGGCCAACTTGCTGATGCAGCTGCAGATTGTAACAGAAAATATGCAGAAGCTCTTGGAGAAGAACACCTTACTGGAGAATTCCTTATGTGGTGCAAATATTGAGCTTGAAGCTTTGAGGGATCATTCAAAGAGCTTAGAGGAAGTCTGCCAGTCACTGAAGAGTGAGAAATCTAATCTTGTTAGCGAAAGAGATGAATTGCTATCTCAACTGGCAAACGTCGAACTGGGGCTCGGAACTCTCGAAAAGAAATTTTCAAATCTCGAAGATAAGTATACTTCCTTGGAAAATGAAAACGAGACGACTATCGATCACGTTGAAGAATTGAGGTCTTCCATTGTTGCCGAGAAAGAAGAGCAGGCAAGTTACAAGACATTAAATGAGACAAGAATGTCTGGTTTGGAAACTGATATTCATATTCTGCAACAAAAAAGTAAACTGGAGAAGAAAGAATTTGAAGAAGAACTAGAGAAGGCTGTAAATGTTCAGGTAGAGATCTTCATTCTCCGAACATTTGTCGAAGATTTGGAGGCGAATAATTGTTCGTTATTAATCGAAAGTCAAAAACATAAAGATGCATCAAAATTTTCAAATAAGCTGATTGCGGAGTTGGAACTGGAAAATCTCGGGCAGCAGGTGGAAATAGAATTCTTGGTGGATGAAATCGAAAACTTACGAGGGGGGATTCATAGATTGTTCAAAGCTGTTCAAATCAATCCGGAATATGGACAAAAAGATGAGATTGAAAGAGAGAACTTTCTTTTATTGAAGATTTTGGACACAGTTGAGGAATTGAAAACTTGTTTGTGCAGAAACAAAGATGAGAAACAGCAGCTTCTGATTGAGAACTCAGTCCTCTTGACTCTGCTTGGGCAACTCGGACTAGAGGGCGAAGAACTTCATAGACAAAGAAATTATCTCGAGAATGAGTTCAAAATCCTGAAAGAACAGCTGGGTTTGAATGAAAAAGAGAAGTACGATCTGCAAGAGACGACAAGGCAATTGATGTTTGAAGCTACCCAGAAAGAGCAGCACGAAAAATTCTTGGCCGGTGAAATCCAAATGCAAAATCTCAAGTTAGAAAATTTGAGGAGAGATTACCTGTTTCTACGGAAAGAAAATTCAGATTTGATTAAAGAAAAGAGGTCCGAGTTAGAGAAGTTTTCAGACCTCAAAGATGCATATTATGTTCTTGAAGAAGAAAATAAAATACATATTGAAGAAGGTGTAGCACTCGAAGTATTCTCGTTAGTTTTGGAAAGCTTCTTGGCAGGTAAATCTATGGAAATGAAAGCTCTTAACAAAGATCTCGATTGTCTTCATCTGGCTAATAGTGATCTAAAGGACAAGGTAGAGGAGATGGCCGAAACTTTGGTAATGAAAGAGGCGGAAATTCTCCGACTGCATGAGTTGGTCGAGAAGTTAGATGACGAGATGCATGAAGTGAAAAAGCACAATGATCTACTAATACATGAAATTGTGCTTGGAAATAATTTTCTGAGACAGAAAGTAGAAGGGCTTTCAGAAACCGAACAAGAGTTGAAGGATTCGCGGGAATTAAATGCCAAACTGTGCAATAGAGTTGAGGAATTGAAGATAGAATGTAAAGAATTGACATTAATTCGAGAAAATCTCGAGATTGAGAATCTTCAACTTTGTATGGATGGCCACCGACAGAAAGAAGAAATCAATTGGCTTTGTGAAATGAATGAAAATTTAAAATCGGAGGTAGATCTGTTGTATAATGAAGTCGAAGAATGCAGGATTAGAGAGGATAACCTAGGTTCAGAGCTTCAAGAGAGAAGAGCCGGGTTTGAACTTTCGGAAGCTGAAGCTGCTTCGTTTTATTTCGATCTTCAAGCCTCCGCTGTTCGTGAGGTTTTTCTTGAAAATAAGCTTCATGAAATTACTAGAGTATGTGAGAAGATTGGAGGTGAAAGTGCTGCAAAAGATATGGAGATTCAAAGTCTAAGAGAAAGTTATCGGATCCTGGAAAGTGAAATGGGAAGGCTAAAACCCGAGTTTTCTGCAACTTTGAAAAAGAACGTGGAACTAAATTCAAACACAAATGTTGAAGTAAGAGTTTTGATGAAAGACGGAGAAGAGTCTAAATCGGAGGGGCATTTAGAGATCGTAAGAAATGGGAGGATTGCCCTTCGGAATGAGTTCGATCAAATTTTGAAGCAGCATACGAAAAGATCGGGATTTGGGACACAAATGAAAGACATCCCTCTGGATCAAGTCTCGGGTTTTTCAATCTACGGACGGAGTAAAATGGAGAGCCGTGAGGCCAATGACCAAATGCTACAATTGTGGGAAACAGCGGAGCCGAAAACCAATCAGAGTCTAATATCCAATGAGTCACATAACCCGACAATCTTACCTCTCCCGACCAATCAGAACGTTCGTCATTCAGGTTCTTCGTCGGACATAGAGAGAGAACCCGTGCTGGGCAATGACAGGTGCGAGAGATCCTCGAGCATCAGGGAACGAAGTCAAGGAGGCAAAAAGAGAAAGATTCTGCAGAGGCTGGCCTCGGATGCTCAGAAATTGACAAATCTCCGAACTACAGTTTATGATTTGAACAAGAGAATGGAGACTAAAAACTGGAGCAAGAAGGAAAGCTACATCGAACACGAGAAGGTCTACAAACAGCTGAAAGAATTCGAAGAAACTATTCTCCAGCTGGTCAACACGAACGATCAATTGACGAAGAACGCAGAGCAAAGTCCTTCATCTTTGGCCGGAAAAACCGCTTCAGAGTTGGAGATTGAAAACGGCACCAGAAACAACATGATGGAGCAGACAAGAAAAGCGTCGGAGAAGATTGGAAGGCTGCATTTAGAGGTACAAAACATTCAACTAGTGTTACTGAAACTGGAAGAAGAGAAAAAAAGAAAATGGAAGACGAGATTTTTGAAGAACAAAACAGGTATCGTACTGAAGGAATTCATTTACAACGGCAAGAAAAGCAGTGAAAAGGACAAGAAGAACAGCTTCTGGGGGTGCCAAGGACCTCCAAGGAACGAAGATTGA 4893 40.55 MDVKVNVMIKLIEADADSFARRAEMYYKKRPELMKLLEEIYRAYRALAERYDCATVELRQAHRTMAEAFPNQVPYDLIDESPSETSVSGPEEPHTPEVLHPIRTVSDLDDLSISFHGNSKRGRRQVDEDGFSRLSCENQNLEGFGDSSETEVEYMKGMLTKIEAEKESIFLKYQKALEKLSNLETELENAQQEAARLDQQASKSEIEVKILKEALSGMEAERDANLLRYNQSLESISNLENLLSLSQEEAKALDMRAGKAKTETQYLRLQLSSSEYEKEASLRQYKQCLEKISLMEAKISAAEENSRVLNEHVERAESEVNSLKETMVKMESEISRARNNVKKLNDELLTVSNKLDSAEVKYSQLEDSNRALQLEANNLMEKITMKDQELAQRQVEFEKFQIQMHDEQSRFKQVETSLHTLQDLHSLSQDKQKALTLELKNGLQMLKDLSIHKLCVEEELQKVKEENRSLKNLENEIFSLKQIKHKLEEEVFHKADYSNELEQEIHCLREEIKGMNGRYQAIMLEVESVGMNPESLLSSIKELQNENARLRDTFETERIKGEVLSAKLNCTEKISKDNVTLEVSLAEMNGELEKMRAKSKDFQESCHFLQEEKASLVAEKANLLMQLQIVTENMQKLLEKNTLLENSLCGANIELEALRDHSKSLEEVCQSLKSEKSNLVSERDELLSQLANVELGLGTLEKKFSNLEDKYTSLENENETTIDHVEELRSSIVAEKEEQASYKTLNETRMSGLETDIHILQQKSKLEKKEFEEELEKAVNVQVEIFILRTFVEDLEANNCSLLIESQKHKDASKFSNKLIAELELENLGQQVEIEFLVDEIENLRGGIHRLFKAVQINPEYGQKDEIERENFLLLKILDTVEELKTCLCRNKDEKQQLLIENSVLLTLLGQLGLEGEELHRQRNYLENEFKILKEQLGLNEKEKYDLQETTRQLMFEATQKEQHEKFLAGEIQMQNLKLENLRRDYLFLRKENSDLIKEKRSELEKFSDLKDAYYVLEEENKIHIEEGVALEVFSLVLESFLAGKSMEMKALNKDLDCLHLANSDLKDKVEEMAETLVMKEAEILRLHELVEKLDDEMHEVKKHNDLLIHEIVLGNNFLRQKVEGLSETEQELKDSRELNAKLCNRVEELKIECKELTLIRENLEIENLQLCMDGHRQKEEINWLCEMNENLKSEVDLLYNEVEECRIREDNLGSELQERRAGFELSEAEAASFYFDLQASAVREVFLENKLHEITRVCEKIGGESAAKDMEIQSLRESYRILESEMGRLKPEFSATLKKNVELNSNTNVEVRVLMKDGEESKSEGHLEIVRNGRIALRNEFDQILKQHTKRSGFGTQMKDIPLDQVSGFSIYGRSKMESREANDQMLQLWETAEPKTNQSLISNESHNPTILPLPTNQNVRHSGSSSDIEREPVLGNDRCERSSSIRERSQGGKKRKILQRLASDAQKLTNLRTTVYDLNKRMETKNWSKKESYIEHEKVYKQLKEFEETILQLVNTNDQLTKNAEQSPSSLAGKTASELEIENGTRNNMMEQTRKASEKIGRLHLEVQNIQLVLLKLEEEKKRKWKTRFLKNKTGIVLKEFIYNGKKSSEKDKKNSFWGCQGPPRNED 1630
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6043328 6048220 + Bda005333.1 Bda11g00592 15700

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00592 1630 Coils Coil 1049 1083 - -
Bda11g00592 1630 Coils Coil 761 781 - -
Bda11g00592 1630 ProSiteProfiles Networked (NET) actin-binding (NAB) domain profile. 1 58 IPR011684 GO:0003779
Bda11g00592 1630 Coils Coil 578 612 - -
Bda11g00592 1630 MobiDBLite consensus disorder prediction 79 99 - -
Bda11g00592 1630 Coils Coil 540 560 - -
Bda11g00592 1630 Coils Coil 820 840 - -
Bda11g00592 1630 MobiDBLite consensus disorder prediction 1610 1630 - -
Bda11g00592 1630 MobiDBLite consensus disorder prediction 1404 1425 - -
Bda11g00592 1630 Coils Coil 236 256 - -
Bda11g00592 1630 Coils Coil 1189 1209 - -
Bda11g00592 1630 PANTHER PROTEIN NETWORKED 1D ISOFORM X1 1303 1629 - -
Bda11g00592 1630 SUPERFAMILY Tropomyosin 146 404 - -
Bda11g00592 1630 Coils Coil 498 518 - -
Bda11g00592 1630 MobiDBLite consensus disorder prediction 1404 1458 - -
Bda11g00592 1630 Coils Coil 166 221 - -
Bda11g00592 1630 Coils Coil 972 999 - -
Bda11g00592 1630 Coils Coil 446 490 - -
Bda11g00592 1630 Coils Coil 1505 1525 - -
Bda11g00592 1630 Coils Coil 1087 1107 - -
Bda11g00592 1630 PANTHER PROTEIN NETWORKED 1D ISOFORM X1 126 1296 - -
Bda11g00592 1630 PANTHER PROTEIN NETWORKED 1D ISOFORM X1 1 116 - -
Bda11g00592 1630 Coils Coil 620 647 - -
Bda11g00592 1630 MobiDBLite consensus disorder prediction 1426 1458 - -
Bda11g00592 1630 Coils Coil 1116 1167 - -
Bda11g00592 1630 PANTHER PROTEIN NETWORKED 4A 126 1296 - -
Bda11g00592 1630 PANTHER PROTEIN NETWORKED 4A 1 116 - -
Bda11g00592 1630 Coils Coil 285 389 - -
Bda11g00592 1630 Coils Coil 655 717 - -
Bda11g00592 1630 PANTHER PROTEIN NETWORKED 4A 1303 1629 - -
Bda11g00592 1630 Pfam KIP1-like protein 1 52 IPR011684 GO:0003779
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00592 - - - qsu:111998448 1452.96
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda11g00592 Bda13g00105 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00834 Bda-Chr6:11581808 Bda11g00592 Bda-Chr11:6043328 8.19E-09 dispersed
Bda09g00109 Bda-Chr9:1967453 Bda11g00592 Bda-Chr11:6043328 1.61E-18 dispersed
Bda11g00592 Bda-Chr11:6043328 Bda12g00010 Bda-Chr12:72564 3.63E-33 dispersed
Bda11g00592 Bda-Chr11:6043328 Bda13g00105 Bda-Chr13:1450061 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g541 . . . . . Bpe14g01206 . . . . Cma06g01386 Cma14g01737 Car06g01195 Car14g01566 Sed02g1335 Cpe08g00276 Cpe03g01456 Bhi01g00773 Tan10g0800 Cmetu06g0678 . . . . . . . . . . . . . . . Lsi05g01629 . . Cme06g00583 Blo02g00526 Blo07g00230 Bda11g00592 Bda13g00105 . Bpe13g00592 Bma02g00829 . . Cmo06g01392 Cmo14g01776 . . . . . . . . . . . . . Cla05g00517 Cam05g0568 Cec05g0580 Cco05g0578 Clacu05g0565 Cmu05g0536 Cre05g0605 . Csa03g01300 Chy06g00554 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003822 2 2 2 1 2 1 2 1 1 1 1 1 4 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 2 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g00592 Bda_Chr11 FPKM 6.035516 7.869382 0.354601 0.372432 25.13431 22.613888 23.736683 0.0 0.0