Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00593 ATGGCTTTCATCTGCAGAAAAATGAAGGAATCATACGTTACAGTACTTCTATGGAGCCTCATCGCCATGGCACTTCTCCCAAGGCCGTGCCAAGCTTCTTCCTTTCCCCCACCCCCTCAAAACCCTAGACTGCTCAAGGCTTACACAGCTCTGCAAGCATGGAAACACGCCATCACCTCCGACCCAAAGAACCTCACCAGCAATTGGTGCGGCCCGAACGTCTGCAACTACACTGGTGTATTCTGTGCTCCGGCCCCAGATGATCCTCACATGGATACCGTCGCCGGAATAGACCTTAACCACGGCGACATAGCCGGCTCGCTGCCGGAGGAGCTCGGCCTGTTGACCGACCTCGCTCTCTTTCACATCAATTCTAACCGCTTTTGCGGTACCATTCCGAGCAGTCTTTACAAACTCTACCTTCTTTTTGAGTTCGACGTCAGCAACAATCAATTTTCCGGGAAGTTTCCTCCTGTTCTTCTCTCTCTTCCTTCGCTGAGTTATCTGGATATCCGATTCAATAACTTTCAAGGCGATGTTCCGTCTCGTCTTTTTGACCTGAAGCTCGATGCTCTTTTCATCAACAACAACAATTTCCAGTTCTCGCTTCCGAGAAACTTAGGAAATTCGACGGCTTCTGTGATTGTTTTGGCCAATAATAAGCTCAGCGGTTGTCTCCCTCCAAGTTTGGCAAAAATGAAGGAAACCTTAGTTGAAATAATCCTGATTAACATTGGATTGACTGGTTGTTTACCTCCAGAAATAGGGTTGCTCACCCAACTGACGGTCTTTGATGTCAGCAATAATAATCTCGTCGGGACGTTGCCGGAATCAATGGGGGGAATGAAAAGCTTGGAGCAGTTAAACGTGGCGAATAACAAGTTATCAGGAGAAATTCCGGCGAGCATTTGCTCATTGCCCAAGTTAGAGAATTTCACGTATTCAAACAACTACTTCTGCGGTGAGCCGCCGGTATGTCTCAAGCTGCGGGCGAAAGATGATCGGAAGAATTGTATTCCATACAGGCCTCTTCAACGGTCGAAGGAGGAGTGCGCCGCCTTCTACTCTCATCCCGTTGACTGTGGTTCTTTTAGTTGCACGCGGAAAAGTCCTCCGCCGCCACCACCGCGCTCGCCTCCGCCTCCTCCTCCAATAACTTATTAA 1164 48.97 MAFICRKMKESYVTVLLWSLIAMALLPRPCQASSFPPPPQNPRLLKAYTALQAWKHAITSDPKNLTSNWCGPNVCNYTGVFCAPAPDDPHMDTVAGIDLNHGDIAGSLPEELGLLTDLALFHINSNRFCGTIPSSLYKLYLLFEFDVSNNQFSGKFPPVLLSLPSLSYLDIRFNNFQGDVPSRLFDLKLDALFINNNNFQFSLPRNLGNSTASVIVLANNKLSGCLPPSLAKMKETLVEIILINIGLTGCLPPEIGLLTQLTVFDVSNNNLVGTLPESMGGMKSLEQLNVANNKLSGEIPASICSLPKLENFTYSNNYFCGEPPVCLKLRAKDDRKNCIPYRPLQRSKEECAAFYSHPVDCGSFSCTRKSPPPPPPRSPPPPPPITY 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6051484 6052647 - Bda005334.1 Bda11g00593 15701

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00593 387 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 6 31 375 - -
Bda11g00593 387 Pfam Leucine rich repeat 260 317 IPR001611 GO:0005515
Bda11g00593 387 Gene3D Ribonuclease Inhibitor 212 339 IPR032675 -
Bda11g00593 387 Pfam Leucine rich repeat N-terminal domain 49 82 IPR013210 -
Bda11g00593 387 SUPERFAMILY L domain-like 47 328 - -
Bda11g00593 387 Gene3D Ribonuclease Inhibitor 47 211 IPR032675 -
Bda11g00593 387 MobiDBLite consensus disorder prediction 368 387 - -
Bda11g00593 387 MobiDBLite consensus disorder prediction 365 387 - -
Bda11g00593 387 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 31 375 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00593 - - - jre:108989444 559.681
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00050 Bda-Chr3:623551 Bda11g00593 Bda-Chr11:6051484 1.21E-132 dispersed
Bda03g00230 Bda-Chr3:1783340 Bda11g00593 Bda-Chr11:6051484 3.00E-120 dispersed
Bda09g01162 Bda-Chr9:42437508 Bda11g00593 Bda-Chr11:6051484 2.01E-147 dispersed
Bda11g00593 Bda-Chr11:6051484 Bda15g00023 Bda-Chr15:1609102 1.14E-78 dispersed
Bda11g00593 Bda-Chr11:6051484 Bda11g01541 Bda-Chr11:47731550 5.75E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g543 . . . . . . . . . . Cma06g01378 Cma14g01740 Car06g01193 Car14g01568 Sed02g1338 Cpe08g00278 Cpe03g01458 Bhi01g00768 Tan10g0798 Cmetu11g1491 . . . Lcy11g1575 . . . . . . . . . . Cone4ag0264 Lsi05g01631 . . Cme06g00581 . . Bda11g00593 . . . . . . Cmo06g01390 Cmo14g01778 . . . . . . . . . . . . . Cla05g00515 Cam05g0566 Cec05g0578 Cco05g0576 Clacu05g0563 Cmu05g0534 Cre05g0603 . Csa03g01297 Chy06g00552 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda03g00230 . 59 413 Leucine-rich Repeat extension Gene Families AT1G62440 62.0 2.0e-54 211.1
Bda03g00050 . 7 273 Leucine-rich Repeat extension Gene Families AT1G62440 51.3 3.0e-42 170.6
Bda09g01162 . 65 233 Leucine-rich Repeat extension Gene Families AT1G62440 69.2 1.9e-41 167.9
Bda09g01162 . 24 401 Leucine-rich Repeat extension Gene Families AT4G13340 72.8 5.2e-60 229.6
Bda03g00230 . 9 263 Leucine-rich Repeat extension Gene Families AT4G13340 64.8 4.6e-56 216.5
Bda03g00050 . 23 378 Leucine-rich Repeat extension Gene Families AT4G13340 59.1 1.5e-43 174.9
Bda11g00593 . 40 368 Leucine-rich Repeat extension Gene Families AT4G13340 68.5 8.7e-39 159.1
Bda09g01162 . 34 401 Leucine-rich Repeat extension Gene Families AT3G24480 73.4 4.4e-68 255.8
Bda03g00230 . 17 412 Leucine-rich Repeat extension Gene Families AT3G24480 61.1 1.0e-56 218.0
Bda03g00050 . 28 377 Leucine-rich Repeat extension Gene Families AT3G24480 56.1 8.4e-43 171.8
Bda11g00593 . 40 368 Leucine-rich Repeat extension Gene Families AT3G24480 65.2 4.3e-39 159.5
Bda11g00593 . 28 370 Leucine-rich Repeat extension Gene Families AT3G22800 69.5 1.7e-56 217.2
Bda03g00230 . 64 394 Leucine-rich Repeat extension Gene Families AT3G22800 64.2 1.1e-47 188.0
Bda03g00050 . 38 378 Leucine-rich Repeat extension Gene Families AT3G22800 63.5 4.1e-47 186.0
Bda03g00050 . 8 378 Leucine-rich Repeat extension Gene Families AT5G25550 66.0 2.5e-59 226.5
Bda03g00230 . 35 406 Leucine-rich Repeat extension Gene Families AT5G25550 53.2 6.5e-39 158.7
Bda09g01162 . 51 403 Leucine-rich Repeat extension Gene Families AT5G25550 62.4 1.6e-37 154.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006898 2 1 0 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 1 1 2 1 2 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g00593 Bda_Chr11 FPKM 0.749267 0.639793 1.116623 1.018611 0.0 0.120222 0.116251 0.805549 0.533432