Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00593 ATGGCTTTCATCTGCAGAAAAATGAAGGAATCATACGTTACAGTACTTCTATGGAGCCTCATCGCCATGGCACTTCTCCCAAGGCCGTGCCAAGCTTCTTCCTTTCCCCCACCCCCTCAAAACCCTAGACTGCTCAAGGCTTACACAGCTCTGCAAGCATGGAAACACGCCATCACCTCCGACCCAAAGAACCTCACCAGCAATTGGTGCGGCCCGAACGTCTGCAACTACACTGGTGTATTCTGTGCTCCGGCCCCAGATGATCCTCACATGGATACCGTCGCCGGAATAGACCTTAACCACGGCGACATAGCCGGCTCGCTGCCGGAGGAGCTCGGCCTGTTGACCGACCTCGCTCTCTTTCACATCAATTCTAACCGCTTTTGCGGTACCATTCCGAGCAGTCTTTACAAACTCTACCTTCTTTTTGAGTTCGACGTCAGCAACAATCAATTTTCCGGGAAGTTTCCTCCTGTTCTTCTCTCTCTTCCTTCGCTGAGTTATCTGGATATCCGATTCAATAACTTTCAAGGCGATGTTCCGTCTCGTCTTTTTGACCTGAAGCTCGATGCTCTTTTCATCAACAACAACAATTTCCAGTTCTCGCTTCCGAGAAACTTAGGAAATTCGACGGCTTCTGTGATTGTTTTGGCCAATAATAAGCTCAGCGGTTGTCTCCCTCCAAGTTTGGCAAAAATGAAGGAAACCTTAGTTGAAATAATCCTGATTAACATTGGATTGACTGGTTGTTTACCTCCAGAAATAGGGTTGCTCACCCAACTGACGGTCTTTGATGTCAGCAATAATAATCTCGTCGGGACGTTGCCGGAATCAATGGGGGGAATGAAAAGCTTGGAGCAGTTAAACGTGGCGAATAACAAGTTATCAGGAGAAATTCCGGCGAGCATTTGCTCATTGCCCAAGTTAGAGAATTTCACGTATTCAAACAACTACTTCTGCGGTGAGCCGCCGGTATGTCTCAAGCTGCGGGCGAAAGATGATCGGAAGAATTGTATTCCATACAGGCCTCTTCAACGGTCGAAGGAGGAGTGCGCCGCCTTCTACTCTCATCCCGTTGACTGTGGTTCTTTTAGTTGCACGCGGAAAAGTCCTCCGCCGCCACCACCGCGCTCGCCTCCGCCTCCTCCTCCAATAACTTATTAA 1164 48.97 MAFICRKMKESYVTVLLWSLIAMALLPRPCQASSFPPPPQNPRLLKAYTALQAWKHAITSDPKNLTSNWCGPNVCNYTGVFCAPAPDDPHMDTVAGIDLNHGDIAGSLPEELGLLTDLALFHINSNRFCGTIPSSLYKLYLLFEFDVSNNQFSGKFPPVLLSLPSLSYLDIRFNNFQGDVPSRLFDLKLDALFINNNNFQFSLPRNLGNSTASVIVLANNKLSGCLPPSLAKMKETLVEIILINIGLTGCLPPEIGLLTQLTVFDVSNNNLVGTLPESMGGMKSLEQLNVANNKLSGEIPASICSLPKLENFTYSNNYFCGEPPVCLKLRAKDDRKNCIPYRPLQRSKEECAAFYSHPVDCGSFSCTRKSPPPPPPRSPPPPPPITY 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6051484 6052647 - Bda005334.1 Bda11g00593 15701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00593 387 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 6 31 375 - -
Bda11g00593 387 Pfam Leucine rich repeat 260 317 IPR001611 GO:0005515
Bda11g00593 387 Gene3D Ribonuclease Inhibitor 212 339 IPR032675 -
Bda11g00593 387 Pfam Leucine rich repeat N-terminal domain 49 82 IPR013210 -
Bda11g00593 387 SUPERFAMILY L domain-like 47 328 - -
Bda11g00593 387 Gene3D Ribonuclease Inhibitor 47 211 IPR032675 -
Bda11g00593 387 MobiDBLite consensus disorder prediction 368 387 - -
Bda11g00593 387 MobiDBLite consensus disorder prediction 365 387 - -
Bda11g00593 387 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 31 375 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00050 Bda-Chr3:623551 Bda11g00593 Bda-Chr11:6051484 1.21E-132 dispersed
Bda03g00230 Bda-Chr3:1783340 Bda11g00593 Bda-Chr11:6051484 3.00E-120 dispersed
Bda09g01162 Bda-Chr9:42437508 Bda11g00593 Bda-Chr11:6051484 2.01E-147 dispersed
Bda11g00593 Bda-Chr11:6051484 Bda15g00023 Bda-Chr15:1609102 1.14E-78 dispersed
Bda11g00593 Bda-Chr11:6051484 Bda11g01541 Bda-Chr11:47731550 5.75E-07 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00593 - - jre:108989444 559.681