Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00601 ATGCCCATGAGGCAGATGAAAGAGAGCTCGGAGCAGCACCTTGTAATCAAAACCCATTTCCAAGACTCCATGAATCCCCCTCAGAAAGCTCCAAAAACCGTCCAAAACAGTAAATGTCCGCCCCACAATGAAGCCCACAACGGTAAGTGCCAAAACCAAGCTTCTCCACCGACGAAAAACAAGGGAAGAAGGAGGGGAAGAGGCGGCAGGAAATCAGACCAGAGCGACGTTTATCTCCGGCCAAGCTCCCGTCACTGTACGTTGGCGCATAAGCCGGTAACGCCAGAGCCGCCTGACGGTGGCAGCTTGTGTGAAACGGCCATGGGTTTTCCTAGTTCAACCAAAGCTTTAAATTTTGCTCCTAGGCCTGGGCAAGGGCAGATTGGAACGAAGTGTATCGTAAAGGCCAACCATTTTTTTGCAGAATTACCAGAAAAAGACTTGAATCAATATGATGTTAGTATAACTCCTGAAGTTGCATCAAGAACTGTAAACAGAGCTATAATGGCGGAACTGGTTAGATTATATAAAGCTTCTGAATTGGGAATGAGATTACCTGCTTACGATGGAAGAAAGAGTTTATACACAGCTGGGGAGCTTCCCTTTGTTTGGAAAGAGTTTGATATTAAACTGATTGATGAAGAAGATGGAATCAATGGTCCCAAGAGGGAAAGACTATATAAAGTCGTTATTAAATTCGTAGCTCGTGCCAATTTGCATCATCTAGGCCAGTTCTTAGCTGGTCTGCGAGCAGACGCCCCTCAAGAAGCTTTGCAAATACTCGACATTGTATTAAGGGAGCTATCGATCAAAAGATTGTGCCCAGTGGGAAGATCCTTTTTTTCACCAGATATTAGATCGCCTCAGCGGCTTGGTGATGGCTTAGAATCTTGGTGTGGGTTTTACCAGAGTATAAGGCCTACTCAGATGGGATTGTCACTGAATATTGATATGGCAGCGGCTGCATTCATCGAACCTCTCCCGGTTCTTGAGTTTGTCGGCCAGCTTCTCAGCAAGGACGTTCTGTCAAGGCCGCTGGCCGATTCCGATCGTGTGAAGATTAAGAAGGCTTTGAGAGGAGTGAAAGTCGAAGTCACCCACAGAGGAAATGTTCGAAGAAAGTATCGTGTTTCAGGATTGACATCTCAGCCTACCCGGGAACTCATATTTCCAGTCGATGAGAACGCAACGATGAAGTCGGTCGTTGAATACTTCCAGGAGATGTATGGATTCACTATTCAACATGCACATCTCCCTAGTCTTCAGGTAGGAAATCAGAAGAAGGCCAATTATCTGCCAATGGAGGCCTGCAAAATTGTTGAAGGCCAACGGTATACGAAAAGATTAAACGAGAAGCAGATCACTGCCCTCCTAAAAGTTACCTGCCAAAGACCGAGAGATCGAGAAAATGACATTCTTCAGACTGTTCAACATAATAACTATGATCAAGATCCTTACGCCAAGGAATTTGGTATCAAAATCAGTGAGAAAATGGCTTCTGTCGAGGCTAGAATACTTCCTGCCCCTTGGCTTAAATATCACGAGACTGGCAAGGAAAAAGATTGTTTGCCTCAAGTAGGCCAATGGAATATGGTGAACAAGAAAATGATTAATGGGATGACTGTCAGTCGATGGGCGTGCATTAACTTCTCGAGGAGCGTGCAAGAAAGTGTGGCTCGGGGATTTTGTAATGAATTGGCTCAAATGTGTCAAGTCTCTGGAATGGAATTTAATCCGGAACCTGTCATTCCAATATACAATGCTCGTCCCGAGCAAGTGGAGAGGTCGTTGAAGCATGTTTTTCATGCTTCTATGAACAAAACTAAAGGAAAAGAGTTAGAGCTATTACTAGCTATTTTGCCTGACAACAACGGTTCCCTCTATGGTGATCTCAAGCGAATTTGCGAGACAGATCTTGGTTTGATATCACAATGTTGTCTTACAAAACATGTGTTTAAGATCAGCAAACAATACTTAGCGAACGTGTCGTTGAAGATTAATGTCAAGATGGGAGGTAGAAACACTGTTCTTCTCGATGCCATCAGCTGCAGAATACCTTTAGTGAGTGACATACCAACCATAATATTTGGAGCTGATGTAACCCACCCAGAAAACGGAGAAGATTCTAGCCCTTCTATAGCTGCTGTGGTAGCCTCACAGGATTGGCCAGAAGTTACTAAATATGCCGGACTGGTTTGTGCTCAAGCCCACCGACAAGAACTCATTCAAGACTTGTACAAAACTTGGCAAGATCCCGTCCGAGGTGCAGTTAGTGGTGGCATGATCAGAGACCTTCTGGTATCGTTCAGGAAGGCAACAGGGCAGAAGCCGTTGAGGATAATATTTTACAGGGATGGTGTGAGCGAGGGCCAGTTTTATCAAGTCTTGCTTTACGAGTTAGATGCAATCAGGAAGGCTTGTGCATCATTAGAACCAAATTATCAACCACCCGTAACTTTCATAGTCGTGCAAAAACGGCACCATACTCGTTTTTTTCCCAACAATCATAGAGACCGAAGTAGCACTGACAAGAGTGGGAATGTTTTGCCTGGCACAGTGGTTGATTCCAAGATATGTCATCCTACCGAATTTGATTTCTACCTTTGCAGCCATGCTGGTATCCAGGGGACAAGTCGGCCAGCTCATTACCATGTTCTTTGGGACGAGAACAATTTTACGGCAGATGGGATTCAGATGCTGACGAACAATCTATGTTACACTTACGCGAGGTGTACTCGATCTGTTTCTGTCGTTCCTCCAGCATATTATGCACATCTAGCTGCTTTTCGAGCTCGATTTTACCTAGAACCGGAGATGCAAGACAACAACTCGACTAATCATTCGACCAAAATGACTCTGCCAGTAGGAGAGTCAGGAGTTCGCCCATTGCCAGCTTTGAAGGAGAACGTAAAGAGAGTCATGTTTTATTGCTAA 2934 44.72 MPMRQMKESSEQHLVIKTHFQDSMNPPQKAPKTVQNSKCPPHNEAHNGKCQNQASPPTKNKGRRRGRGGRKSDQSDVYLRPSSRHCTLAHKPVTPEPPDGGSLCETAMGFPSSTKALNFAPRPGQGQIGTKCIVKANHFFAELPEKDLNQYDVSITPEVASRTVNRAIMAELVRLYKASELGMRLPAYDGRKSLYTAGELPFVWKEFDIKLIDEEDGINGPKRERLYKVVIKFVARANLHHLGQFLAGLRADAPQEALQILDIVLRELSIKRLCPVGRSFFSPDIRSPQRLGDGLESWCGFYQSIRPTQMGLSLNIDMAAAAFIEPLPVLEFVGQLLSKDVLSRPLADSDRVKIKKALRGVKVEVTHRGNVRRKYRVSGLTSQPTRELIFPVDENATMKSVVEYFQEMYGFTIQHAHLPSLQVGNQKKANYLPMEACKIVEGQRYTKRLNEKQITALLKVTCQRPRDRENDILQTVQHNNYDQDPYAKEFGIKISEKMASVEARILPAPWLKYHETGKEKDCLPQVGQWNMVNKKMINGMTVSRWACINFSRSVQESVARGFCNELAQMCQVSGMEFNPEPVIPIYNARPEQVERSLKHVFHASMNKTKGKELELLLAILPDNNGSLYGDLKRICETDLGLISQCCLTKHVFKISKQYLANVSLKINVKMGGRNTVLLDAISCRIPLVSDIPTIIFGADVTHPENGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWQDPVRGAVSGGMIRDLLVSFRKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIVVQKRHHTRFFPNNHRDRSSTDKSGNVLPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQMLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYLEPEMQDNNSTNHSTKMTLPVGESGVRPLPALKENVKRVMFYC 977
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6125664 6131314 - Bda005344.1 Bda11g00601 15709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00601 977 Pfam PAZ domain 353 457 IPR003100 GO:0005515
Bda11g00601 977 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 60 976 - -
Bda11g00601 977 MobiDBLite consensus disorder prediction 16 59 - -
Bda11g00601 977 CDD Piwi_ago-like 485 935 IPR045246 -
Bda11g00601 977 SUPERFAMILY Ribonuclease H-like 604 936 IPR012337 -
Bda11g00601 977 SMART Piwi_a_2 615 936 IPR003165 GO:0003676
Bda11g00601 977 SUPERFAMILY PAZ domain 321 482 IPR036085 GO:0005515
Bda11g00601 977 ProSiteProfiles Piwi domain profile. 615 936 IPR003165 GO:0003676
Bda11g00601 977 Gene3D paz domain 320 445 - -
Bda11g00601 977 Pfam Piwi domain 616 934 IPR003165 GO:0003676
Bda11g00601 977 Pfam Mid domain of argonaute 524 600 IPR032473 -
Bda11g00601 977 ProSiteProfiles PAZ domain profile. 327 441 IPR003100 GO:0005515
Bda11g00601 977 SMART DUF1785_2 274 326 IPR014811 -
Bda11g00601 977 Gene3D - 684 977 IPR036397 GO:0003676
Bda11g00601 977 Pfam Argonaute linker 1 domain 275 324 IPR014811 -
Bda11g00601 977 MobiDBLite consensus disorder prediction 1 100 - -
Bda11g00601 977 Pfam N-terminal domain of argonaute 131 265 IPR032474 -
Bda11g00601 977 CDD PAZ_argonaute_like 326 440 - -
Bda11g00601 977 Gene3D - 505 678 - -
Bda11g00601 977 SMART PAZ_2_a_3 327 463 IPR003100 GO:0005515
Bda11g00601 977 Pfam Argonaute linker 2 domain 467 513 IPR032472 -
Bda11g00601 977 PANTHER PROTEIN ARGONAUTE 10 60 976 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00848 Bda-Chr6:11735586 Bda11g00601 Bda-Chr11:6125664 0 dispersed
Bda07g00658 Bda-Chr7:7894110 Bda11g00601 Bda-Chr11:6125664 0 dispersed
Bda07g00878 Bda-Chr7:10241723 Bda11g00601 Bda-Chr11:6125664 4.99E-137 dispersed
Bda09g01310 Bda-Chr9:44896581 Bda11g00601 Bda-Chr11:6125664 8.05E-129 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00601 K11593 - pvy:116141441 1789.24