Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00607 ATGTCGACGGAAAACAGAATGAGGGTTGATTTCCACTACGTTTCCGCCATTTTTCTCTGTTTCTTCTGTTGCCATCATCTTCTCCAGAGCTCCTATGGGTTGCTAGACACCCAAGGCTACACCTGCGAACCTAACCAGACCACCAGTTCTTGCCAAACCTACGTCTTCTATCGAGCCACCGCCCCTAATTTCCTCGATTTAGCCTCCATAGCCGACCTTTTCTGGGTCAGTCGGATCCAGATTTCCCACCCCAGCAACATCTCCGACCCTTCCGCTCCACTTCTCCCCGACCAGCCTCTCTTTGTTCCGATCACCTGTTCCTGCAACTCCGTCAACGATTCCACTAGCTTGTCGTATGCGAATCTCTCGTTCACGATCAAGCAAAGTGACACTTTCTACCTTGTCTCCACAAATAATTTTCAAAACCTCACAACCTACCAGTCCGTCGAGGCTGTGAATCCAACTCTCGTCGCCACCGATCTTTCAATCGGCGTTAACGTAATTTTCCCAATCTTCTGCAAATGCCCCAACTTCACTCAATCGGGAAATCGAGCCAATTTTCTCGTTTCCTACGTGATTCTACCTTCTGATAACTTCTCCTCAATCGGTTCAAGGTTTGGGGTCCAAACTCAGTCTATAATCGAAGTTAATGGGAACAACAGTCAACCTTTTGACACCATTTTCATACCAGTCAATCAGCTCCCGAATCTTACGCAGCCCATCGGAGTTCCCTCCTCTTCGCCGGGGGAAAAGACTGAGAGAAAAGGGGAAAGGGAAGTGGAACAAGAGGAAAGTCTGAAATCGCATCTGAACAACGAAGGTAAAGCGAAGGGGATGAGGAAAGAAATGGAGATGAATTTGATGGCTGATGTTTCGGACTGTTTGGATAAATACAGAGTGTTTGGGATTGAAGAACTGAATCTAGCTACTGATGGGTTCAGTGAGAAGAGCTTGATTCAAGGCTCTGTTTATAAAGGGTGTATAAATGGAGAATTCTTTGCCATAAAGAAGATGAAGTGGAATGCCTATGAAGAGCTCAAGATCTTGCAGAAGGTAAACCATGGAAATCTGGTGAAGCTAGAGGGATTTTGTGTGGACCCAGAAGACGCGAGCTGCTACCTAATCTACGAGTTTGTCGAAAATGGTTCTCTTTATTCGTGGCTACACGAAAACCAGAGACCAAAATTGAGTTGGAAAAGCAGATTAAGAATAGCCATTGATGTAGCTAATGGCCTGCAATACATTCACGAGCACACGAGACCAAGAGTCGTCCACAAAGACATAAAAAGCAGCAATATTCTATTAGACGGAAACATGAGAGCCAAAATTGCCAACTTCGGACTGGCGAAATCGGGCTGCAACGCCATTACAATGCATATTGTCGGAACTCAAGGCTACATTTCCCCGGAATACATTGTCGACGGGGTTGTCTCGACAAAAATGGACGTTTTCTCATTTGGGGTCGTTTTGTTGGAGCTCATTTCGGGGAGGGAAGCCATTGAAGAAGATGGGAGTGTTCTGTGGATAAAAGCTGGTAGAATTCTTGAAGGGAAGGGGGATGAGAAGGTGGAGAGGATAAAGAGATGGGTGGATGAGATTCTGTTGGAGCAGTCTGGATTGGTGGAGAGCTTGATGGATGTAATTGAAGTAGCCATTGCTTGCATTCAGAAAGAACCTTCGAAGCGGCCAAGTATGGTGGAAATCGTCTACGCTTTGTGCAAAAACGATGAGGTTCTGTTTGATGTTTCTGGGGATGAATTTTCGGCTTCTCCGTTGGCTAGCAGGTGA 1788 46.03 MSTENRMRVDFHYVSAIFLCFFCCHHLLQSSYGLLDTQGYTCEPNQTTSSCQTYVFYRATAPNFLDLASIADLFWVSRIQISHPSNISDPSAPLLPDQPLFVPITCSCNSVNDSTSLSYANLSFTIKQSDTFYLVSTNNFQNLTTYQSVEAVNPTLVATDLSIGVNVIFPIFCKCPNFTQSGNRANFLVSYVILPSDNFSSIGSRFGVQTQSIIEVNGNNSQPFDTIFIPVNQLPNLTQPIGVPSSSPGEKTERKGEREVEQEESLKSHLNNEGKAKGMRKEMEMNLMADVSDCLDKYRVFGIEELNLATDGFSEKSLIQGSVYKGCINGEFFAIKKMKWNAYEELKILQKVNHGNLVKLEGFCVDPEDASCYLIYEFVENGSLYSWLHENQRPKLSWKSRLRIAIDVANGLQYIHEHTRPRVVHKDIKSSNILLDGNMRAKIANFGLAKSGCNAITMHIVGTQGYISPEYIVDGVVSTKMDVFSFGVVLLELISGREAIEEDGSVLWIKAGRILEGKGDEKVERIKRWVDEILLEQSGLVESLMDVIEVAIACIQKEPSKRPSMVEIVYALCKNDEVLFDVSGDEFSASPLASR 595
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6171112 6173370 + Bda005350.1 Bda11g00607 15715

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00607 595 SMART serkin_6 313 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda11g00607 595 ProSitePatterns Serine/Threonine protein kinases active-site signature. 423 435 IPR008271 GO:0004672|GO:0006468
Bda11g00607 595 Gene3D Phosphorylase Kinase; domain 1 283 378 - -
Bda11g00607 595 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 10 248 - -
Bda11g00607 595 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 251 588 - -
Bda11g00607 595 MobiDBLite consensus disorder prediction 238 277 - -
Bda11g00607 595 PANTHER - 251 588 - -
Bda11g00607 595 Pfam Protein kinase domain 321 569 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda11g00607 595 MobiDBLite consensus disorder prediction 250 277 - -
Bda11g00607 595 Gene3D Transferase(Phosphotransferase) domain 1 379 583 - -
Bda11g00607 595 ProSiteProfiles Protein kinase domain profile. 295 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda11g00607 595 PANTHER - 10 248 - -
Bda11g00607 595 SUPERFAMILY Protein kinase-like (PK-like) 297 572 IPR011009 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00607 - - - fve:101294699 809.29
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01423 Bda-Chr1:50161859 Bda11g00607 Bda-Chr11:6171112 1.05E-07 dispersed
Bda04g00317 Bda-Chr4:47007325 Bda11g00607 Bda-Chr11:6171112 2.18E-74 dispersed
Bda07g01399 Bda-Chr7:16782635 Bda11g00607 Bda-Chr11:6171112 1.12E-70 dispersed
Bda11g00607 Bda-Chr11:6171112 Bda14g01210 Bda-Chr14:12070710 3.38E-76 dispersed
Bda14g00354 Bda-Chr14:2588945 Bda11g00607 Bda-Chr11:6171112 4.95E-38 dispersed
Bda11g00607 Bda-Chr11:6171112 Bda06g00378 Bda-Chr6:5968442 1.29E-56 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g597 . . . . . Bpe14g01221 . . . . Cma06g01349 Cma14g01771 Car06g01170 Car14g01593 . Cpe08g00302 . Bhi01g00738 . . . . . Lcy11g1602 . . . . . . . . . Cone7ag0290 . Lsi05g01658 . . Cme06g00553 Blo02g00600 Blo07g00240 Bda11g00607 . . . . . . Cmo06g01362 Cmo14g01807 . . . . . . . . . . . . . Cla05g00493 . . . . . . . Csa03g01270 Chy06g00523 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008192 1 1 2 0 1 1 2 1 1 1 0 1 4 1 1 2 1 1 1 0 1 1 1 1 1 1 1 1 1 1 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69896 PF00069 Pkinase 1.40E-39 CL0016 Bda PK