Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00614 ATGGTGGACATGGCATTTGTCACTACCGATACACTGTCTGAACTAGTATGGTCTCCACATGAAGGTTTAAGTCACAAGTGTGCTGATTTTAGCTTTGGTGATAGAAAGCCCTTAATGTTAAGAGGTGCTGGACCAAGTAACCAGACTTTTACCCACCAGCAAAGTGTTCCAGGTGAAAAGTCAAAACAAGTACAAGATAGAAATTCAACGCCTTATTCGGAGAATGAATGTGACAATAAAGATATCTCATCCGGATCAGATGAGTGTAATATTGGTGCTTCGATTATTAGACCGAAGCATATAATCGAAAAAGGAATTGGCAATGATGCTAAAGAAATGAATAATGCGGATGGAGTTTCGTCTCCACGTTTCAAACTAGAGGAGGATGATCTCCACGACCAGATCGGAAAGGAAATTGCTGCTTCAATCTGTATACAGATGGTTGAAGCGGCTGAGATGACAGAAAACAAGTATTTGAGCTTCGCAGATGAAAGAAAGGTTGATGTTGAATCTGTGGTAAAAGAGGAACTTGAGCTTGATATAGCAGGACTTGAAAAACCGCCTAATCTTACAAGGGAAGACAGCAGGGCAGGACTTGGCAAACTGACTGTGTGCATGGATGATGCTTTAGCATCTGACATCCATGTGCAAGGGGGATGTCAAGCTTCTGCATCTCTCCCTCAGAATCAACATCTCTCAAGTTCACGGACTTTGGAAAAACGGGAGTCAACGGCAGAAAATGAGTTGCAGAACATAAATACTGAATATAGTTGTTGCGAAATGAGTGAAATTGAAGCTTTAGAATTACTCCGCCATCAGCCAGGTGAGATGTTGAAATCTGTAGGTGACTGTGTTGAAGCTGATCGTTATCCCTCTCACAGCAGAATCCATAAGAAAAGGAAGAAAGACAAGGAAAAGGCTGTGTCTGATGGACATGTTGATGGTAGAAATTCAAACAATAAAGATGACAACTATGAATGCGTGGAAAGCTGTGCAGGAATATCTTCAAACGGTAAAAAAAGATGGAATGAGCAACAGTTGGCCGTCGGAAGTAAAAGAGTCAAAAACCAAATTCATGGTACGGATGGGTCAACGTATTTTAAAGGACAAGACAGTTCTTTTATGAATTGGATAGCAAATATGATCAAGGCGTTTCCAAATTCAATTATGAAGAAGGAATCTTCTCTTGCTCTTACCCTTGCACACTCTGATAATGAACTCGCCGGTTCTAGCAAGGAACTTGTCGTATGGAAGAAGAGTCGTGACAAACAGAAACGGAGTACAGGTTTTCCGTCCATTTTTCAGTCTTTACATGTTGATCCGAGCACAAAGGTTCGGCATGGATTGACTCATGATACCTACTACGAGAAAGAGGAGGGATTTGAGGATTCTATTTACGAGGCTTATGATGCCAATGCTACCCCATTAGCCTTCCATACAGAGAACAACATATCTTGTGGTCATGTTCTTGCCACAAAAGAGAGGCTCAACAAATCTACATCAGGAAATGAGAACTTCAACGAATCTGTGTTGGGCAGTGGTGCAGATGCGCTTAGATGGCCAAATATGTTATGCCTCGATCATAGTGGTTGTCATGAGAATCAGATGACTGTCTCTGGAGGAAGGAAAGTTGCTTGTGATCCTCTAATTACCATTGGCAAGGATATAAATGGAACGAGCTCAAGTTCATCCATGGCTAAGCTTATGAGAAACAATACTCAAAATATTGACTCGGATGTACGGACTGGAGTCGAGAATAGTCCCGGTTTAGGTAATGGAGAGGATCATCTTAAAAGCTTGTGGATTACTCGGTTATCGGTGAAAACTTCCTGCTCAGCGGTAAATTTAGATTCCGAGGACCAAACTAGTGATAAACCTTATAGCATTGGGAAAAGAGAAATTCAAAGATGTACAGCTGATTGTGGTTTTGATAGAACTGATGATGAGTCTTCATTAGATAAGTTCAATCCTATGATGTTGTCAACGAGATTTGGAAGTTCAGAGGCCATGGCGTCTGTCTTAGCAAGGAGATTTGATGCCTTAAAACACATTTTATCAAATGTAAGAGAAACCGGCACAGATGAAAGGATAACCTGTTTCTTTTGTGGCGGAAGAGATCACCCCATACAAAATTGTTCAAAAATAGCTGCAAGTGAAGTTGAGCACCTTTCAAAGATTTCAAGTTTTTTTGGGATGTCTGCCGACGTTACTTGTTTGTGCATTGGATGTTTTCAGCTCAATCACTGGGCCGTTTCTTGCCCCTTGGCTGTATCAAGAACTCAATATTATCCAGAATCTGGTTGTTCTTTTGTTAATCATTTCAGAAATATGGAAAAGCAGCCTTCAAGCAGTGGGTTGAATCCCAAGTTTCTCACTGGTGATAGTAGCAAACGTCAACCTGCTATATGCCCTATAAATCATATTAATAATCTTCAATTCGTGGACAGCAAATCCTGTCATAATGAGGCCTCCAAACAACTGCAATTTCTCGAGGATCCTGAAAAAAATTTCAAGGCTTCAAGTTGTATGGAGAAAAAAGAAAGCCAGACAATTCCACATTATAGTTTTGTGGACAAGCTGCCTTCAGATGGACGAGTAGTCTTTGATATGATGAAGAAGCTTCAATTGTCTCGCACAGACATTCTAAGATGGATGAACTCTAATATGTCACTGTCAAAACTCGAGGGTCTACCCTTGCGGCTACGGCTCGGAAAGTGGGAAAAAGGATTTAAAGGAACCGGATACCATGTGGCTTTTATAATGGGGTCACAGAATGCCAGAAATTCAATCTCCGTGAAAGTTGGGGAAGTTGAATGCTTGGCCAAGAGCCACTGTATCTCCAACCTCGTTTTCCTCGAGGATGCATTAGAACCTTACATGAGCCAAAAGACATTGGAGACACATTGGGGAAAACACCATCATAATTATGTTGATGGTTTGAACAAACAACTGGAAAAGAGCGACATCCTCTATGGCTACACTTTGGATGAACTTGTCAAAGTTACTTATAACAATGGGAATCCTTTTCCTGAATTTAATAATGCTGCCCAGGTCTGGAATCACGACTTTTTTTGGGAATCCATGCAACCGGGAGGTGGGAACATACCAAAACTAGGTGTTCTTAAACAGATTGAGAAGGACTATGGATCCTTTATGAATTTCAAGGATAAGTTTGTTGATTCAGCTCTTTCTCTATTTGGCTCTGGATGGGTTTGGCTTGTCTTGAAGAGGGAAGAAAAGGAACTTAGGATCGTAAAAACAAGCAATGCCATATGTCCAATAGTATGGGATGATATACCAATCATTTGCTTGGATATGTGGGAGCATTCTTACTATTTGGATTACAAGAATGACAGAGCGAAATATGTGAAGGTGTTCATGGACCACCTCGTGTCGTGGAATGCAGCCATGGGGAGAATGGCTCGAGCCGAGTGCTTTGTCAATTTAGGCGAACCCAAAATTCCCATTGCTTAA 3474 41.13 MVDMAFVTTDTLSELVWSPHEGLSHKCADFSFGDRKPLMLRGAGPSNQTFTHQQSVPGEKSKQVQDRNSTPYSENECDNKDISSGSDECNIGASIIRPKHIIEKGIGNDAKEMNNADGVSSPRFKLEEDDLHDQIGKEIAASICIQMVEAAEMTENKYLSFADERKVDVESVVKEELELDIAGLEKPPNLTREDSRAGLGKLTVCMDDALASDIHVQGGCQASASLPQNQHLSSSRTLEKRESTAENELQNINTEYSCCEMSEIEALELLRHQPGEMLKSVGDCVEADRYPSHSRIHKKRKKDKEKAVSDGHVDGRNSNNKDDNYECVESCAGISSNGKKRWNEQQLAVGSKRVKNQIHGTDGSTYFKGQDSSFMNWIANMIKAFPNSIMKKESSLALTLAHSDNELAGSSKELVVWKKSRDKQKRSTGFPSIFQSLHVDPSTKVRHGLTHDTYYEKEEGFEDSIYEAYDANATPLAFHTENNISCGHVLATKERLNKSTSGNENFNESVLGSGADALRWPNMLCLDHSGCHENQMTVSGGRKVACDPLITIGKDINGTSSSSSMAKLMRNNTQNIDSDVRTGVENSPGLGNGEDHLKSLWITRLSVKTSCSAVNLDSEDQTSDKPYSIGKREIQRCTADCGFDRTDDESSLDKFNPMMLSTRFGSSEAMASVLARRFDALKHILSNVRETGTDERITCFFCGGRDHPIQNCSKIAASEVEHLSKISSFFGMSADVTCLCIGCFQLNHWAVSCPLAVSRTQYYPESGCSFVNHFRNMEKQPSSSGLNPKFLTGDSSKRQPAICPINHINNLQFVDSKSCHNEASKQLQFLEDPEKNFKASSCMEKKESQTIPHYSFVDKLPSDGRVVFDMMKKLQLSRTDILRWMNSNMSLSKLEGLPLRLRLGKWEKGFKGTGYHVAFIMGSQNARNSISVKVGEVECLAKSHCISNLVFLEDALEPYMSQKTLETHWGKHHHNYVDGLNKQLEKSDILYGYTLDELVKVTYNNGNPFPEFNNAAQVWNHDFFWESMQPGGGNIPKLGVLKQIEKDYGSFMNFKDKFVDSALSLFGSGWVWLVLKREEKELRIVKTSNAICPIVWDDIPIICLDMWEHSYYLDYKNDRAKYVKVFMDHLVSWNAAMGRMARAECFVNLGEPKIPIA 1157
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6208958 6217696 - Bda005359.3 Bda11g00614 15722

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00614 1157 Gene3D Fe,Mn superoxide dismutase (SOD) domain 961 1028 IPR036324 -
Bda11g00614 1157 PANTHER SUPEROXIDE DISMUTASE [FE] 3, CHLOROPLASTIC 950 1157 - -
Bda11g00614 1157 Gene3D - 1035 1149 IPR036314 -
Bda11g00614 1157 Coils Coil 235 255 - -
Bda11g00614 1157 Pfam Iron/manganese superoxide dismutases, alpha-hairpin domain 945 1029 IPR019831 GO:0004784|GO:0006801|GO:0046872
Bda11g00614 1157 SMART rtf1 865 966 IPR004343 GO:0003677
Bda11g00614 1157 MobiDBLite consensus disorder prediction 226 247 - -
Bda11g00614 1157 SUPERFAMILY Plus3-like 867 962 IPR036128 GO:0003677
Bda11g00614 1157 PRINTS Manganese superoxide dismutase signature 968 981 IPR001189 GO:0004784|GO:0006801|GO:0046872
Bda11g00614 1157 PRINTS Manganese superoxide dismutase signature 947 958 IPR001189 GO:0004784|GO:0006801|GO:0046872
Bda11g00614 1157 PRINTS Manganese superoxide dismutase signature 1012 1025 IPR001189 GO:0004784|GO:0006801|GO:0046872
Bda11g00614 1157 PRINTS Manganese superoxide dismutase signature 1065 1073 IPR001189 GO:0004784|GO:0006801|GO:0046872
Bda11g00614 1157 PRINTS Manganese superoxide dismutase signature 1103 1115 IPR001189 GO:0004784|GO:0006801|GO:0046872
Bda11g00614 1157 ProSitePatterns Manganese and iron superoxide dismutases signature. 1105 1112 IPR019833 GO:0004784|GO:0006801|GO:0046872
Bda11g00614 1157 MobiDBLite consensus disorder prediction 289 321 - -
Bda11g00614 1157 Pfam Iron/manganese superoxide dismutases, C-terminal domain 1039 1137 IPR019832 GO:0004784|GO:0006801|GO:0046872
Bda11g00614 1157 MobiDBLite consensus disorder prediction 44 84 - -
Bda11g00614 1157 PANTHER SUPEROXIDE DISMUTASE 950 1157 - -
Bda11g00614 1157 MobiDBLite consensus disorder prediction 303 321 - -
Bda11g00614 1157 SUPERFAMILY Fe,Mn superoxide dismutase (SOD), C-terminal domain 1031 1142 IPR036314 -
Bda11g00614 1157 MobiDBLite consensus disorder prediction 41 84 - -
Bda11g00614 1157 SUPERFAMILY Fe,Mn superoxide dismutase (SOD), N-terminal domain 944 1030 IPR036324 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00614 - - - qsu:112027474 484.567
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda11g00614 Bda13g00089 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g00614 Bda-Chr11:6208958 Bda13g00089 Bda-Chr13:1197428 0 dispersed
Bda02g00884 Bda-Chr2:49239916 Bda11g00614 Bda-Chr11:6208958 1.17E-13 transposed
Bda07g01772 Bda-Chr7:33534459 Bda11g00614 Bda-Chr11:6208958 3.25E-65 transposed
Bda13g00827 Bda-Chr13:9792326 Bda11g00614 Bda-Chr11:6208958 3.29E-31 transposed
Bda14g00208 Bda-Chr14:1434171 Bda11g00614 Bda-Chr11:6208958 4.52E-25 transposed
Bda11g00614 Bda-Chr11:6208958 Bda13g00086 Bda-Chr13:1111211 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g618 . . . . . Bpe14g01228 . . . . . Cma14g01781 . Car14g01602 . . Cpe03g01490 . . . . . . . . . . . . . . Cone14ag0137 Cone15ag0142 Cone7ag0299 Cone4ag0300 Lsi05g01674 . . Cme06g00540 . . Bda11g00614 Bda13g00089 . Bpe13g00571 Bma02g00807 . . . Cmo14g01817 . . . . . . . . . . . . . Cla05g00483 Cam05g0526 Cec05g0539 Cco05g0539 Clacu05g0525 Cmu05g0497 Cre05g0564 . Csa03g01258 Chy06g00513 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004918 3 0 0 1 2 1 1 1 1 1 1 1 2 1 0 1 1 2 1 1 1 1 1 1 1 1 1 5 5 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g00614 Bda_Chr11 FPKM 4.655102 3.759505 8.677859 8.097428 34.544357 37.195305 32.78759 9.957159 10.070282