Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00624 CTTTCGGAGACCCATAAAGTCTGCCTTTTTTCTCTCCACCCATCTTCAATCGTAGCCGATATGTCAGAGATTTACGATAGGAAGAGCGAATTGAAGGCTTTAGATGAAACAAAAGGAGGAGTAAAAGGGCTAGTCGATTCTGGACTGACCAAAGTGCCAAGGATATTCCGACAAGATCAACACACGAAGGTCCAGGGTAAGGTTGCGCCGGACCATACCGAATGGAGCATCCCAGTAATAGACTTAAAAGGGTCGGAAGTCGCCGATCAGATCCGGGAAGCTTGCCAAACTTGGGGGTTCTTTCAGGTGGTGAATCACGGAATTCCGGCGAGAGTTTTGGAGGAGATGATCGGCGGGATACGAAGATTTCACGAGCAGGAGAATGAGGTGAAGAAAGAGTGGTACTCGCGAGATAGAACGAAGACGGCAATATACAACACTAATTTCGATCTGTACACAGCTCCTTGCACTAATTGGCGGGATACCTTGACCTGCGCAATGGCGCCTCGTCGTCCTGATCCTCAACAATTACCCGCCGTCTGCAGTGATATTCTCATCCAGTACTCGAATAAAATAATTGAATTAGGATTTGTTCTACTCGCATTATTATCCGAGTCACTTGGACTCGATCGAAACTACTTGAAAGATATAGGATGTGGGGATGGACTTCTAGTTTTGGGACATTACTATCCTGCTTGTCCTGAACCAGACGTGACACTAGGAACTAGTAGCCATGCTGATAGTAGCTTCCTCACCGTGCTCTTACAAGATCAAATCGGCGGCCTCCAAATCCTCCACCAAAATCAGTGGGTCGATGTCACCCCCGTTCCAGGAGCTCTCGTAATAAACCTCGGAGACATGATGCAGGTAAGCCGTTTTGTCTGTCTCGTTGATTGTTGTGCGCAGCTAATAACCAATGACAGATACGTAAGCGCTAAACACAGGGTGCTCGCAAGCAAGCAAGCGAGAGTTTCAGTTGCCGGGTTTATAAGAACACATCTACCACCAGAGAATTCATCAAGACTTTATGGACCGATCAAAGAGTTGTTATCGGAGAAGAACCCCCCAATCTACCAGCAAACTACAATTAAAGACTTCGTCTCAAAGTACTACGCAACAGGGCTGAACGGAGTATCTACATTAGAATATTTCAAGCTTTGA 1161 46.43 LSETHKVCLFSLHPSSIVADMSEIYDRKSELKALDETKGGVKGLVDSGLTKVPRIFRQDQHTKVQGKVAPDHTEWSIPVIDLKGSEVADQIREACQTWGFFQVVNHGIPARVLEEMIGGIRRFHEQENEVKKEWYSRDRTKTAIYNTNFDLYTAPCTNWRDTLTCAMAPRRPDPQQLPAVCSDILIQYSNKIIELGFVLLALLSESLGLDRNYLKDIGCGDGLLVLGHYYPACPEPDVTLGTSSHADSSFLTVLLQDQIGGLQILHQNQWVDVTPVPGALVINLGDMMQVSRFVCLVDCCAQLITNDRYVSAKHRVLASKQARVSVAGFIRTHLPPENSSRLYGPIKELLSEKNPPIYQQTTIKDFVSKYYATGLNGVSTLEYFKL 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6268875 6270491 + Bda005368.1 Bda11g00624 15732

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00624 386 PANTHER 2OG-FE(II) OXYGENASE FAMILY OXIDOREDUCTASE 21 385 - -
Bda11g00624 386 SUPERFAMILY Clavaminate synthase-like 38 376 - -
Bda11g00624 386 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 219 332 IPR005123 -
Bda11g00624 386 Pfam non-haem dioxygenase in morphine synthesis N-terminal 77 174 IPR026992 -
Bda11g00624 386 Pfam 2OG-Fe(II) oxygenase superfamily 228 332 IPR044861 -
Bda11g00624 386 Gene3D - 31 368 IPR027443 -
Bda11g00624 386 PANTHER OXIDOREDUCTASE, 2OG-FE II OXYGENASE FAMILY PROTEIN 21 385 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00624 - - - pop:7485152 469.159
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda10g01196 Bda-Chr10:45957020 Bda11g00624 Bda-Chr11:6268875 2.15E-96 dispersed
Bda11g00624 Bda-Chr11:6268875 Bda07g01960 Bda-Chr7:36967623 1.12E-51 dispersed
Bda11g00624 Bda-Chr11:6268875 Bda07g01747 Bda-Chr7:32853584 1.37E-98 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g652 . . . . . . . . . . . Cma14g01801 . Car14g01618 . . . . . . . . . . . . . . . . . . . Cone7ag0313 . Lsi05g01707 . . . . . Bda11g00624 . . . . Bma06g01595 . . Cmo14g01839 . . . . . Cpe17g00187 Bhi12g01637 . . Lac12g2192 Hepe03g0269 . Lcy13g0358 . . . . . . . . Csa03g01230 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000120 1 1 3 2 2 1 5 9 8 1 3 7 6 4 12 8 7 4 4 8 9 14 11 13 12 12 11 13 13 18 222
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g00624 Bda_Chr11 FPKM 75.390381 81.92453 40.375912 41.141102 34.486118 32.390797 37.351357 12.321036 12.898144