Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00630 ATGGGTAGTGGAAATAAGACCATAATTTGGTTTAGGAGAGATCTCAGACTTGAGGACAATCCTGCCTTAGCTGCTGCTGCTAAGGATGGTTGTGTTCTTCCAGTCTATATCTGGTGTCCTAAAGAAGAAGGGCAATTCTACCCAGGCCGAGTCTCGAGATGGTGGCTTCAACAGTCTCTAACTCACTTGCAGCAGTCATTGAAATCGCTCGGTGCTCAGCTGGTTCCAATGAAAACGGAGAGTACTTATTCTTCCCTGTTAGATTGTATCAATGCCATTGGGGCAAACAAAGTAGTATTTAACCGCCTTTACGATCCTGTTTCAATTCAAGGCTCCAAACTTGATCCCGAGGGAGATTACGTTAGGCACTGGCTACCCGAACTAGCTCGAATGACCACTGAGTGGATTCATCATCCTTGGGAGGCACCACCTTCCTTGCTTAAAGCTTCTGGGGTGGAGCTGGGTATAAACTATCCAAATCCCATAATTGATATTGATTTGGCTAGACAGAATTTGACAGAAGCTAAATTCAAAATGTGGGCAAAAGCTGCACTCTCAAATGCTATGGCGGAAACCGTTGTGGATAATTCGGACAGCTTTGATAATCGAGCTATTCCAAAGGTTGTTTTGCAGGAAAAGATGTGTCCTTCGAATTCACCTAACGATCAAAGGGTGCCGAGCTTTCGGAACATTGGCAAAAGTAGCATTACACGGAAGCGCACGAAAGCTTTGGATGAAGAAAAGATGAATGGAATACCAAGAATAGAGGAAGACTTATGCTCTACTGCAGAATCTTCATCAGCCAAGAAACAAACAACCTCGAGAACTTCATTTGCTGTTCCTCAATTTTGGTCATCAAAAGAGCATAGTCTTCTCAGACTGTGA 885 43.84 MGSGNKTIIWFRRDLRLEDNPALAAAAKDGCVLPVYIWCPKEEGQFYPGRVSRWWLQQSLTHLQQSLKSLGAQLVPMKTESTYSSLLDCINAIGANKVVFNRLYDPVSIQGSKLDPEGDYVRHWLPELARMTTEWIHHPWEAPPSLLKASGVELGINYPNPIIDIDLARQNLTEAKFKMWAKAALSNAMAETVVDNSDSFDNRAIPKVVLQEKMCPSNSPNDQRVPSFRNIGKSSITRKRTKALDEEKMNGIPRIEEDLCSTAESSSAKKQTTSRTSFAVPQFWSSKEHSLLRL 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6328341 6331597 - Bda005376.1 Bda11g00630 15738

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00630 294 Gene3D HUPs 8 110 IPR014729 -
Bda11g00630 294 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 107 180 IPR036134 -
Bda11g00630 294 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 7 111 IPR036155 -
Bda11g00630 294 PANTHER CRYPTOCHROME 5 109 IPR002081 -
Bda11g00630 294 PANTHER CRYPTOCHROME 109 244 IPR002081 -
Bda11g00630 294 Pfam FAD binding domain of DNA photolyase 93 174 IPR005101 -
Bda11g00630 294 Pfam DNA photolyase 8 108 IPR006050 -
Bda11g00630 294 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 5 140 IPR006050 -
Bda11g00630 294 PANTHER CRYPTOCHROME 2B APOPROTEIN 5 109 - -
Bda11g00630 294 PANTHER CRYPTOCHROME 2B APOPROTEIN 109 244 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00630 K12119 CRY2; cryptochrome 2 - tcc:18603214 239.58
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda11g00630 Bda13g00064 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g00630 Bda-Chr11:6328341 Bda11g00766 Bda-Chr11:7723238 8.81E-40 dispersed
Bda11g00630 Bda-Chr11:6328341 Bda13g00064 Bda-Chr13:883157 1.69E-58 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g704 . . . . . Bpe14g01253 . . . Cmo17g00164 . . . . . . . . . . . . . . Cla06g00663 Cam06g0712 Cec06g0716 Cco06g0726 Clacu06g0702 Cmu06g0689 Cre06g1459 . . . . . . Chy05g00323 . . Blo07g00262 Bda11g00630 Bda13g00064 . Bpe13g00558 Bma02g00784 Bma06g01599 . . . . Cma17g00165 . Car17g00146 Cpe12g00142 . Bhi12g01623 . . . Hepe03g0282 . Lcy13g0375 . . . . . . . . . . Cme05g00565
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0024489 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g00630 Bda_Chr11 FPKM 7.703952 8.437749 2.697372 3.101874 12.488038 13.538852 14.30301 7.346782 7.662257