Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00636 ATGATGAGGGGAAGAGCTGATGGAACCCAGAAGAAGCGTGTGATTGCTTCATTATGTGTAGTCGGAATTTTTCTTGGTTTTCTTTATGCATATTATGGGTCCATTTTTGGCTCTCAAACCAATGGTGCTTCAGCTTTGGAGTATGGGGCTAGATCTTTGAGAAAACTTGGCTCCTCTTATGCGAGTGGAGATGACGAGGCCGATGGACAATCTTCGTTGAAATATTGGCAGGAAGATGGCGAAGATGATGTCGTACCCAAGAGTTATCCTGTTTGCGATGATCGACATTCAGAACTGATTCCCTGCTTAGACAGGAATCTCATATATCAAATGAGATTGAAACTCGACTTGTCGTTGATGGAGCACTATGAAAGACATTGCCCTCCTCCTGAGAGACGATTCAACTGTCTTATTCCCCCTCCACATGGATACAAGGTCCCAGTCAAGTGGCCAAAAAGCAGAGATGAAGTATGGAAAGTAAACATTCCTCACACTCACCTTGCACATGAGAAATCGGACCAGAACTGGATGGTGGTGAAAGGTGAAAGGATTGTATTCCCGGGGGGAGGCACACATTTTCACTATGGAGCTGACAAGTATATTGCATCGCTTGCTAATATGCTCAACTTTTCGAACAACAATCTAAACAATGAAGGGAGATTGAGAACAGTTCTTGATGTTGGATGTGGGGTTGCCAGTTTTGGAGCCTATCTTCTTTCTTCTGATATTATAGCAATGTCATTAGCGCCCAATGACGTGCATCAAAACCAAATTCAGTTCGCTTTAGAACGAGGAATTCCGGCTTATCTCGGCGTTTTAGGGACCAAGAGACTGCCTTACCCTAGCCGATCCTTTGAACTTGCCCATTGTTCTCGTTGTAGGATTGATTGGCTCCAGAGAGGTGGTATTCTTCTCCTCGAGCTGGATAGGGTGCTCAGACCGGGAGGCTATTTTGCGTATTCATCTCCTGAAGCTTATGCACAGGATGAGGAGGATCTAAAGATATGGAGAGAAATGAGCGCGTTGGTAAAGCAAATGTGTTGGACGATAGCTCAGAAGAGAAATCAAACTGTAATTTGGCAAAAACCTCTTACAAACGATTGCTATAAGGAGAGAGAGCCTGATGTCCATCCTCCGCTTTGCCGGTCCGATGAGGATCCTGATGCAACATGGGGCGTGCAGATGGAGGCTTGTATCACTCCTTACTCAGAGCATGACCATAGGACTAAAGGAAGTGGTTTGGCTCCATGGCCAGCTAGGCTGACCTCTCCCCCTTCCAGACTTGCTGATTTCGGCTATTCAAATGAAATGTTCGAAAAGGACACGGAACTTTGGAGAAAGAGAGTTGAAAGCTACTGGAATTTTCTAAGTCCAAAGATCAAATCGAATACTCTGAGGAACTTGATGGACATGAAGGCGAATATGGGGTCATTTGCAGCTGCTTTGAAAGATAAAGATGTTTGGGTGATGAATGTTGTACCTGAAGATGGACCAAATACGCTTAAGTTGATTTACGACAGAGGCCTCATCGGCGCCACTCACAGCTGGTGTGAAGCCTTCTCGACGTACCCTCGAACGTACGATCTACTCCATGCATGGACGGTATTTTCCGATATGGAGAAAAAGGAATGCAGTGCGCAGGATTTATTGATCGAGATGGATCGCATACTTAGACCCACTGGTTTCGTAATTATCAGGGACAAACAGCCAGTGATCGACTTTGTCAAAAAGTATCTTCCAGCATTGCACTGGGAGGCCTGTGCCGAACCTGTGAAGACCAAGCACCCTCAGCTTCATTATGAGTCAAAATTGTACATGCTTCTTCAAGGAGGAACGGGCATTCCACATCTTAAATGGTTTGGAGTTGAGGGTGAATACAATGCTATGGTGATTGACCTCCTTGGCCCAAGTTTGGAAGATTTGTTTAACTATTGTAACAGGAAGTTTTCTCTAAAAACAGTTTTGATGCTGGCAGATCAGTTGATAAATAGAGTTGAGTACATGCATTCACGAGGTTTTCTCCACCGCGATATAAAGCCCGACAACTATTTAATGGGATTGGGGCGCAAGGCAAATCAGGTTTACATCATTGATTATGGACTAGGAAAGAAATATCGGGATCTTCAAACCCACAAGCATATACCGTACAGAGAAAACAAGAATCTCACTGGAACAGCTCGATATGCAAGTGTTAATACTCACCTTGGTGTTGAGCAAAGCAGGAGGGACGATCTTGAATCTCTTGGTTATGTGCTTATTCTTCCATGGCAAGGTCTGAAAGCAGGGACTAAAAAACAGAAATATGACAAGATCAGTGAAAAAAAGATGCTGACTCCGATTGAGTTTCTTTGCAAATCATATCCACCAGAGTTTACATCATACTTCCATTACTGTCGATCTTTGAGGTTTGAAGACAAACCAGATTATTCATACCTGAAAAGGCTTTTCCGTGACCTTTTTATTCGAGAAGGCTATCAGTTTGATTATGTATTTGACTGGACTATATTGAAATATCCACAAATTGGATCCAGTTCTCGATCAAGACCTAGTGGGAGACCAGCGATGAACCCATTAACTTCTGCCGAGAGAATGGAAAAACCTTCAGCAGGGCATGAGACTAGGGATGGTTATCCGGGTGCTTTTGAGGCATTTGCTAGAAGGAATGCAACTGGGCAGGGTTTGCATGGCGATCATTCGAGACACAGATCGTCCAACGACGCTCCTTCATCCAAGGATGTGCAACCTGATTCAGAGCGAGGTCGGAGTTCCTCTCGAAATGGGAGCAGTTTAAAGAGGCCTGTAATATCTAGCAGCCGGCCTAGTTCGTCAGGGGAGCCTAGTGAGAACCGATCTAGCAGACTTATGTCAAGCAGTAGCCGCCTTTCTTCAAACCAGAGGATCCAACCTGGTTATGACTCCAAAACATCTTCCTTTTCCCGCCCATCTGCAACGAAGGGTGGACGCGATGAAACACTCAGGAGCTTCGAGCTGTTGTCGATTGGAGCAGGGAAGAGGAAATAA 3021 44.75 MMRGRADGTQKKRVIASLCVVGIFLGFLYAYYGSIFGSQTNGASALEYGARSLRKLGSSYASGDDEADGQSSLKYWQEDGEDDVVPKSYPVCDDRHSELIPCLDRNLIYQMRLKLDLSLMEHYERHCPPPERRFNCLIPPPHGYKVPVKWPKSRDEVWKVNIPHTHLAHEKSDQNWMVVKGERIVFPGGGTHFHYGADKYIASLANMLNFSNNNLNNEGRLRTVLDVGCGVASFGAYLLSSDIIAMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRGGILLLELDRVLRPGGYFAYSSPEAYAQDEEDLKIWREMSALVKQMCWTIAQKRNQTVIWQKPLTNDCYKEREPDVHPPLCRSDEDPDATWGVQMEACITPYSEHDHRTKGSGLAPWPARLTSPPSRLADFGYSNEMFEKDTELWRKRVESYWNFLSPKIKSNTLRNLMDMKANMGSFAAALKDKDVWVMNVVPEDGPNTLKLIYDRGLIGATHSWCEAFSTYPRTYDLLHAWTVFSDMEKKECSAQDLLIEMDRILRPTGFVIIRDKQPVIDFVKKYLPALHWEACAEPVKTKHPQLHYESKLYMLLQGGTGIPHLKWFGVEGEYNAMVIDLLGPSLEDLFNYCNRKFSLKTVLMLADQLINRVEYMHSRGFLHRDIKPDNYLMGLGRKANQVYIIDYGLGKKYRDLQTHKHIPYRENKNLTGTARYASVNTHLGVEQSRRDDLESLGYVLILPWQGLKAGTKKQKYDKISEKKMLTPIEFLCKSYPPEFTSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTILKYPQIGSSSRSRPSGRPAMNPLTSAERMEKPSAGHETRDGYPGAFEAFARRNATGQGLHGDHSRHRSSNDAPSSKDVQPDSERGRSSSRNGSSLKRPVISSSRPSSSGEPSENRSSRLMSSSSRLSSNQRIQPGYDSKTSSFSRPSATKGGRDETLRSFELLSIGAGKRK 1006
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6353291 6364015 + Bda005382.1 Bda11g00636 15744

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00636 1006 SUPERFAMILY Protein kinase-like (PK-like) 590 833 IPR011009 -
Bda11g00636 1006 Gene3D Vaccinia Virus protein VP39 195 371 IPR029063 -
Bda11g00636 1006 MobiDBLite consensus disorder prediction 920 984 - -
Bda11g00636 1006 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 436 568 IPR029063 -
Bda11g00636 1006 ProSitePatterns Serine/Threonine protein kinases active-site signature. 673 685 IPR008271 GO:0004672|GO:0006468
Bda11g00636 1006 Pfam Protein kinase domain 625 753 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda11g00636 1006 SMART serkin_6 554 978 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda11g00636 1006 MobiDBLite consensus disorder prediction 893 919 - -
Bda11g00636 1006 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 1 588 IPR004159 GO:0008168
Bda11g00636 1006 Gene3D Transferase(Phosphotransferase) domain 1 578 874 - -
Bda11g00636 1006 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 124 364 IPR029063 -
Bda11g00636 1006 MobiDBLite consensus disorder prediction 842 877 - -
Bda11g00636 1006 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 98 592 IPR004159 GO:0008168
Bda11g00636 1006 ProSiteProfiles Protein kinase domain profile. 551 821 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda11g00636 1006 MobiDBLite consensus disorder prediction 891 1006 - -
Bda11g00636 1006 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASE-RELATED 1 588 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00636 - - - rcn:112197275 1066.22
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda11g00636 Bda13g00058 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g00636 Bda-Chr11:6353291 Bda12g00486 Bda-Chr12:6558722 0 dispersed
Bda11g01095 Bda-Chr11:10722852 Bda11g00636 Bda-Chr11:6353291 6.86E-134 dispersed
Bda14g01202 Bda-Chr14:11995292 Bda11g00636 Bda-Chr11:6353291 6.19E-133 dispersed
Bda11g00636 Bda-Chr11:6353291 Bda13g00058 Bda-Chr13:830904 4.91E-142 wgd
Bda11g00636 Bda-Chr11:6353291 Bda05g00861 Bda-Chr5:57102169 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g724 . . . . . Bpe14g01261 . . Cmo08g01053 . Cma06g01316 Cma14g01817 Car06g01133 Car14g01629 . Cpe08g00338 Cpe03g01520 Bhi01g00721 . . . . . . Cla06g00672 Cam06g0721 Cec06g0729 Cco06g0737 Clacu06g0712 Cmu06g0698 Cre06g1469 Cone14ag0152 Cone15ag0166 Cone7ag0330 Cone4ag0335 Lsi05g01738 Csa02g01054 Chy05g00315 Cme06g00483 Blo02g00750 Blo07g00269 Bda11g00636 Bda13g00058 . Bpe13g00553 Bma02g00775 Bma06g01604 . Cmo06g01326 Cmo14g01855 Cma08g01078 . Car08g00952 . . Cpe17g00199 Bhi12g01609 Tan06g2404 . . Hepe03g0291 . Lcy13g0383 Cla05g00439 . Cec05g0487 . Clacu05g0474 . . Lsi09g01228 Csa03g01201 Chy06g00465 Cme05g00576
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000948 3 5 3 5 4 2 4 2 2 2 2 2 4 2 2 4 2 5 3 2 3 2 2 2 2 2 2 4 3 3 85
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69897 PF03141 Methyltransf_29 1.50E-229 CL0063 Bda PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g00636 Bda_Chr11 FPKM 0.0 0.389797 1.993291 2.18386 1.50958 1.498222 1.681819 0.299781 0.314676