Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00647 AAAGTCTCCGGTGAGGTGCCGGAAGAGCCCGTTGTTTCTACGAAATCCGGTTTGCTCTACGAGAAGCGTTTAATCGAGCGGCATATATTGGACTATGGAAAATGCCCAATCACCGGAGAATCACTTACCATGGATGATGTTGTTCCAATTAAAACTGGCAAGATAGTAAAGCCCAGACCTGTTCAAGCTGCTAGCATTCCTGGCATGTTAGGAATGTTCCAGAATGAATGGGATGGATTGATGCTATCTAATTTTGCACTTGAACAACAACTGCATACGGCTAGACAAGAGCTTAGCCATGCCTTGTACCAGCATGATGCTGCATGTCGTGTGATCGCGAGGCTTAAAAAAGAAAGGGACGAAGCTAGGTCATTACTTGCTCAAGCTGAAAGGCAAATGCCTGGTGTAGGATCAGCACCAGTTGTAAATGCTTCTATCCTGGAGGATGTTATTGTCGCTACAGGCGCTGAAGATGAAGATTTGGGCCCTGATGGAAAAAGAATGCGCCCGGGAATAACTACTAGTATCATCTCTGAGCTTACAGAGTGTAATGCTGCACTGTCACAGCAGCGGAAAAAGCGACAGATACCAGCAACTTTGGCTCCCGTTGATCGTTTGGAGGGTTATACCCAGATATCTAGTCATCCTCTCCATAAAACGAGCAAACCAGGCATTTTATCTCTAGACATTCATTACAGCAAGGACTTAGTTGCTACTGGTGGGCTTGACTCCAATGCTGTAATTTTTGATCGACCTTCAGGACAGATTTTATCAACACTTACTGGTCATTCTAAGAAGGTGACTAGCGTAAAGTTTGTGGGACAAGAGGCATTATTCTTGACCGGTTCGGCTGATAAGACTGTTCGTATTTGGCAAAGCTCTGATGATGGGAACTATAATTGTAGACATATCTTAAAAGATCATACTGCTGAGGTCCAAGCAGTTACCGTTCATGCTACAAACAACTACTTTGTGACCGCATCTCTTGATAACACATGGTGTTTTTATGAAATTGCTTCTGGATTATGTCTAGCACAGGTCGCTGACACTTCAGGAACGGAGGGCTACACATCAGCAGCCTTTCATCCTGACGGTCTTATCCTTGGAACAGGTACATCTGAGGCTCTTGTTAAGATTTGGGATGTAAAAAGTCAGACAAATGTTGCCAGATTTGATGGACATGTTGGAGCTGTAACTGCAATTTCTTTTTCAGAAAATGGTTACTTCCTTGCGACTGCTGCTCATGATGGTGTAAAGCTGTGGGATCTACGCAAATTGAAGAACTTCCGGACATTTTCTCCATATGATTCAGATACACCATCAAACTCTGTTGAATTTGACCAAAGTGGAAGTTACCTTGCAATTGGAGGATCAGATACAAGGGTTTACCAAGTTGCAAGCGTTAAATCTGAATGGAATTGTATCAAGACCATTCCAGATTTGTCTGGAACAAGTAAAGCAACGTGCATCAAATTCGGTCCAGATGCAACATACTTAGCGGTAGGATCAATGGATCGAAACCTCCGGATATTTGGTTTGCCCGGGGAAGATGGTCCAACTGAGTCATGA 1569 43.66 KVSGEVPEEPVVSTKSGLLYEKRLIERHILDYGKCPITGESLTMDDVVPIKTGKIVKPRPVQAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQAERQMPGVGSAPVVNASILEDVIVATGAEDEDLGPDGKRMRPGITTSIISELTECNAALSQQRKKRQIPATLAPVDRLEGYTQISSHPLHKTSKPGILSLDIHYSKDLVATGGLDSNAVIFDRPSGQILSTLTGHSKKVTSVKFVGQEALFLTGSADKTVRIWQSSDDGNYNCRHILKDHTAEVQAVTVHATNNYFVTASLDNTWCFYEIASGLCLAQVADTSGTEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQTNVARFDGHVGAVTAISFSENGYFLATAAHDGVKLWDLRKLKNFRTFSPYDSDTPSNSVEFDQSGSYLAIGGSDTRVYQVASVKSEWNCIKTIPDLSGTSKATCIKFGPDATYLAVGSMDRNLRIFGLPGEDGPTES 522
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6426976 6433757 + Bda005393.1 Bda11g00647 15755

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00647 522 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 260 292 - -
Bda11g00647 522 ProSiteProfiles Trp-Asp (WD) repeats profile. 260 292 IPR001680 GO:0005515
Bda11g00647 522 ProSiteProfiles U-box domain profile. 1 67 IPR003613 GO:0004842|GO:0016567
Bda11g00647 522 Pfam Prp19/Pso4-like 63 128 IPR013915 -
Bda11g00647 522 SUPERFAMILY RING/U-box 2 50 - -
Bda11g00647 522 ProSiteProfiles Trp-Asp (WD) repeats profile. 391 431 IPR001680 GO:0005515
Bda11g00647 522 SMART WD40_4 298 337 IPR001680 GO:0005515
Bda11g00647 522 SMART WD40_4 208 250 IPR001680 GO:0005515
Bda11g00647 522 SMART WD40_4 253 292 IPR001680 GO:0005515
Bda11g00647 522 SMART WD40_4 471 512 IPR001680 GO:0005515
Bda11g00647 522 SMART WD40_4 340 381 IPR001680 GO:0005515
Bda11g00647 522 SMART WD40_4 384 422 IPR001680 GO:0005515
Bda11g00647 522 SMART WD40_4 425 464 IPR001680 GO:0005515
Bda11g00647 522 Pfam WD domain, G-beta repeat 473 511 IPR001680 GO:0005515
Bda11g00647 522 Pfam WD domain, G-beta repeat 254 291 IPR001680 GO:0005515
Bda11g00647 522 Pfam WD domain, G-beta repeat 387 422 IPR001680 GO:0005515
Bda11g00647 522 CDD RING-Ubox_PRP19 2 51 - -
Bda11g00647 522 SMART Ubox_2 3 63 IPR003613 GO:0004842|GO:0016567
Bda11g00647 522 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 391 424 - -
Bda11g00647 522 PANTHER PRE-MRNA-PROCESSING FACTOR 19 1 522 IPR038959 GO:0000398|GO:0000974|GO:0006281|GO:0061630
Bda11g00647 522 SUPERFAMILY WD40 repeat-like 220 511 IPR036322 GO:0005515
Bda11g00647 522 Coils Coil 112 132 - -
Bda11g00647 522 CDD WD40 224 511 - -
Bda11g00647 522 ProSiteProfiles Trp-Asp (WD) repeats profile. 349 390 IPR001680 GO:0005515
Bda11g00647 522 Gene3D - 201 513 IPR015943 GO:0005515
Bda11g00647 522 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 57 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00647 K10599 PRPF19, PRP19; pre-mRNA-processing factor 19 [EC:2.3.2.27] - vvi:100249408 892.493
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda11g00647 Bda13g00041 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g00647 Bda-Chr11:6426976 Bda04g00146 Bda-Chr4:3969533 1.76E-11 dispersed
Bda15g00401 Bda-Chr15:6913794 Bda11g00647 Bda-Chr11:6426976 4.28E-11 transposed
Bda11g00647 Bda-Chr11:6426976 Bda13g00041 Bda-Chr13:611808 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g778 . . . . . Bpe14g01276 . . . . Cma06g01297 Cma14g01841 Car06g01113 Car14g01649 Sed02g1438 Cpe08g00356 Cpe03g01541 Bhi01g00680 Tan10g0634 Cmetu06g0539 . Hepe05g1688 . Lcy11g1702 . . . . . . . Cone14ag0178 Cone15ag0188 . . Lsi05g01766 . . Cme06g00455 Blo02g00770 . Bda11g00647 Bda13g00041 . Bpe13g00538 Bma02g00753 Bma06g01616 . Cmo06g01305 Cmo14g01882 . . . . . . . . . . . . . Cla05g00413 Cam05g0451 Cec05g0458 Cco05g0459 Clacu05g0448 Cmu05g0425 Cre05g0488 . Csa03g01174 Chy06g00436 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda13g01704 . 1 1018 U-box Gene Family AT5G15400 73.3 0.0e+00 1481.1
Bda04g00508 . 1 781 U-box Gene Family AT3G54790 52.0 1.6e-125 447.2
Bda04g00003 . 1 576 U-box Gene Family AT2G23140 58.7 1.5e-76 284.3
Bda14g01265 . 195 724 U-box Gene Family AT2G23140 53.5 1.7e-72 270.8
Bda09g01286 . 1 359 U-box Gene Family AT4G21350 58.4 4.8e-115 411.4
Bda01g01749 . 1 360 U-box Gene Family AT4G21350 61.0 1.1e-114 410.2
Bda12g00757 . 134 457 U-box Gene Family AT3G07360 52.6 1.3e-84 310.1
Bda10g00536 . 134 457 U-box Gene Family AT3G07360 58.2 2.6e-77 285.8
Bda14g01078 . 202 414 U-box Gene Family AT1G71020 64.5 9.9e-73 271.2
Bda14g01065 . 238 467 U-box Gene Family AT1G71020 60.2 6.0e-70 261.9
Bda14g00363 . 213 385 U-box Gene Family AT1G71020 57.4 1.2e-49 194.5
Bda07g00590 CCT 254 421 U-box Gene Family AT1G71020 57.2 1.6e-46 184.1
Bda02g00818 CCT 249 418 U-box Gene Family AT1G71020 55.6 2.1e-46 183.7
Bda14g01078 . 1 618 U-box Gene Family AT1G23030 55.7 1.7e-106 383.6
Bda07g00590 CCT 89 632 U-box Gene Family AT2G28830 57.8 3.6e-101 365.9
Bda02g00818 CCT 89 634 U-box Gene Family AT2G28830 58.1 9.1e-97 351.3
Bda07g00590 CCT 1 630 U-box Gene Family AT3G46510 67.8 1.7e-155 546.6
Bda02g00818 CCT 1 627 U-box Gene Family AT3G46510 64.4 1.0e-144 510.8
Bda14g00363 . 4 587 U-box Gene Family AT3G46510 59.2 1.3e-120 430.6
Bda01g01561 . 26 639 U-box Gene Family AT3G46510 51.4 1.1e-95 347.8
Bda14g00363 . 3 588 U-box Gene Family AT3G54850 67.0 1.6e-150 530.0
Bda07g00590 CCT 8 621 U-box Gene Family AT3G54850 54.9 2.4e-103 373.2
Bda01g01561 . 34 643 U-box Gene Family AT5G42340 63.6 7.3e-143 504.6
Bda06g00438 . 18 636 U-box Gene Family AT5G42340 59.1 6.7e-112 401.7
Bda01g00060 . 9 655 U-box Gene Family AT5G01830 56.2 3.0e-192 668.7
Bda07g00963 . 1 600 U-box Gene Family AT1G29340 53.1 3.2e-192 668.7
Bda03g01627 BCT 3 405 U-box Gene Family AT3G52450 55.6 5.7e-128 454.5
Bda09g01389 . 25 167 U-box Gene Family AT3G52450 51.4 8.5e-39 158.3
Bda03g01627 BCT 3 404 U-box Gene Family AT2G35930 56.0 1.0e-126 450.3
Bda05g01129 BCT 3 204 U-box Gene Family AT2G35930 53.7 3.8e-57 219.2
Bda09g01389 . 25 166 U-box Gene Family AT2G35930 50.3 4.4e-37 152.5
Bda04g00334 . 58 216 U-box Gene Family AT5G64660 60.0 2.5e-48 189.9
Bda04g00334 . 58 216 U-box Gene Family AT5G09800 59.1 3.1e-43 172.9
Bda14g01286 . 1 449 U-box Gene Family AT3G49810 71.9 6.0e-181 630.6
Bda11g01486 . 1 450 U-box Gene Family AT3G49810 70.5 1.6e-178 622.5
Bda14g01286 . 1 449 U-box Gene Family AT5G65920 67.4 7.8e-165 577.0
Bda11g01486 . 1 450 U-box Gene Family AT5G65920 66.3 3.9e-164 574.7
Bda11g00250 . 33 822 U-box Gene Family AT2G45910 50.6 1.3e-221 766.5
Bda06g00764 . 17 788 U-box Gene Family AT4G25160 51.8 1.1e-209 726.9
Bda01g01564 BCT 4 813 U-box Gene Family AT1G76390 63.7 1.0e-279 959.5
Bda11g00977 BCT 12 812 U-box Gene Family AT1G76390 60.4 2.4e-265 911.8
Bda01g01564 BCT 7 813 U-box Gene Family AT1G20780 64.0 1.0e-284 976.1
Bda11g00977 BCT 12 812 U-box Gene Family AT1G20780 60.2 2.6e-267 918.3
Bda10g00010 . 1 598 U-box Gene Family AT5G67530 76.4 2.2e-263 904.8
Bda13g00041 BCT 1 524 U-box Gene Family AT1G04510 72.4 3.9e-224 774.2
Bda11g00647 BCT 2 522 U-box Gene Family AT1G04510 72.0 8.5e-219 756.5
Bda13g00041 BCT 1 488 U-box Gene Family AT2G33340 72.7 3.0e-210 728.0
Bda11g00647 BCT 2 486 U-box Gene Family AT2G33340 72.4 4.5e-206 714.1
Bda05g00836 . 10 279 U-box Gene Family AT3G07370 67.0 2.0e-105 379.0
Bda12g00756 . 8 277 U-box Gene Family AT3G07370 61.5 4.8e-96 347.8
Bda12g00767 . 4 118 U-box Gene Family AT3G07370 61.7 2.1e-38 156.4
Bda13g01704 . 1 1018 U-box Gene Family AT5G15400 73.3 0.0e+00 1481.1
Bda04g00508 . 1 781 U-box Gene Family AT3G54790 52.0 1.6e-125 447.2
Bda04g00003 . 1 576 U-box Gene Family AT2G23140 58.7 1.5e-76 284.3
Bda14g01265 . 195 724 U-box Gene Family AT2G23140 53.5 1.7e-72 270.8
Bda09g01286 . 1 359 U-box Gene Family AT4G21350 58.4 4.8e-115 411.4
Bda01g01749 . 1 360 U-box Gene Family AT4G21350 61.0 1.1e-114 410.2
Bda12g00757 . 134 457 U-box Gene Family AT3G07360 52.6 1.3e-84 310.1
Bda10g00536 . 134 457 U-box Gene Family AT3G07360 58.2 2.6e-77 285.8
Bda14g01078 . 202 414 U-box Gene Family AT1G71020 64.5 9.9e-73 271.2
Bda14g01065 . 238 467 U-box Gene Family AT1G71020 60.2 6.0e-70 261.9
Bda14g00363 . 213 385 U-box Gene Family AT1G71020 57.4 1.2e-49 194.5
Bda07g00590 CCT 254 421 U-box Gene Family AT1G71020 57.2 1.6e-46 184.1
Bda02g00818 CCT 249 418 U-box Gene Family AT1G71020 55.6 2.1e-46 183.7
Bda14g01078 . 1 618 U-box Gene Family AT1G23030 55.7 1.7e-106 383.6
Bda07g00590 CCT 89 632 U-box Gene Family AT2G28830 57.8 3.6e-101 365.9
Bda02g00818 CCT 89 634 U-box Gene Family AT2G28830 58.1 9.1e-97 351.3
Bda07g00590 CCT 1 630 U-box Gene Family AT3G46510 67.8 1.7e-155 546.6
Bda02g00818 CCT 1 627 U-box Gene Family AT3G46510 64.4 1.0e-144 510.8
Bda14g00363 . 4 587 U-box Gene Family AT3G46510 59.2 1.3e-120 430.6
Bda01g01561 . 26 639 U-box Gene Family AT3G46510 51.4 1.1e-95 347.8
Bda14g00363 . 3 588 U-box Gene Family AT3G54850 67.0 1.6e-150 530.0
Bda07g00590 CCT 8 621 U-box Gene Family AT3G54850 54.9 2.4e-103 373.2
Bda01g01561 . 34 643 U-box Gene Family AT5G42340 63.6 7.3e-143 504.6
Bda06g00438 . 18 636 U-box Gene Family AT5G42340 59.1 6.7e-112 401.7
Bda01g00060 . 9 655 U-box Gene Family AT5G01830 56.2 3.0e-192 668.7
Bda07g00963 . 1 600 U-box Gene Family AT1G29340 53.1 3.2e-192 668.7
Bda03g01627 BCT 3 405 U-box Gene Family AT3G52450 55.6 5.7e-128 454.5
Bda09g01389 . 25 167 U-box Gene Family AT3G52450 51.4 8.5e-39 158.3
Bda03g01627 BCT 3 404 U-box Gene Family AT2G35930 56.0 1.0e-126 450.3
Bda05g01129 BCT 3 204 U-box Gene Family AT2G35930 53.7 3.8e-57 219.2
Bda09g01389 . 25 166 U-box Gene Family AT2G35930 50.3 4.4e-37 152.5
Bda04g00334 . 58 216 U-box Gene Family AT5G64660 60.0 2.5e-48 189.9
Bda04g00334 . 58 216 U-box Gene Family AT5G09800 59.1 3.1e-43 172.9
Bda14g01286 . 1 449 U-box Gene Family AT3G49810 71.9 6.0e-181 630.6
Bda11g01486 . 1 450 U-box Gene Family AT3G49810 70.5 1.6e-178 622.5
Bda14g01286 . 1 449 U-box Gene Family AT5G65920 67.4 7.8e-165 577.0
Bda11g01486 . 1 450 U-box Gene Family AT5G65920 66.3 3.9e-164 574.7
Bda11g00250 . 33 822 U-box Gene Family AT2G45910 50.6 1.3e-221 766.5
Bda06g00764 . 17 788 U-box Gene Family AT4G25160 51.8 1.1e-209 726.9
Bda01g01564 BCT 4 813 U-box Gene Family AT1G76390 63.7 1.0e-279 959.5
Bda11g00977 BCT 12 812 U-box Gene Family AT1G76390 60.4 2.4e-265 911.8
Bda01g01564 BCT 7 813 U-box Gene Family AT1G20780 64.0 1.0e-284 976.1
Bda11g00977 BCT 12 812 U-box Gene Family AT1G20780 60.2 2.6e-267 918.3
Bda10g00010 . 1 598 U-box Gene Family AT5G67530 76.4 2.2e-263 904.8
Bda13g00041 BCT 1 524 U-box Gene Family AT1G04510 72.4 3.9e-224 774.2
Bda11g00647 BCT 2 522 U-box Gene Family AT1G04510 72.0 8.5e-219 756.5
Bda13g00041 BCT 1 488 U-box Gene Family AT2G33340 72.7 3.0e-210 728.0
Bda11g00647 BCT 2 486 U-box Gene Family AT2G33340 72.4 4.5e-206 714.1
Bda05g00836 . 10 279 U-box Gene Family AT3G07370 67.0 2.0e-105 379.0
Bda12g00756 . 8 277 U-box Gene Family AT3G07370 61.5 4.8e-96 347.8
Bda12g00767 . 4 118 U-box Gene Family AT3G07370 61.7 2.1e-38 156.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004919 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g00647 Bda_Chr11 FPKM 11.57056 11.304853 8.616847 9.566113 14.277248 12.99297 18.066557 2.808815 2.363895