Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00647 AAAGTCTCCGGTGAGGTGCCGGAAGAGCCCGTTGTTTCTACGAAATCCGGTTTGCTCTACGAGAAGCGTTTAATCGAGCGGCATATATTGGACTATGGAAAATGCCCAATCACCGGAGAATCACTTACCATGGATGATGTTGTTCCAATTAAAACTGGCAAGATAGTAAAGCCCAGACCTGTTCAAGCTGCTAGCATTCCTGGCATGTTAGGAATGTTCCAGAATGAATGGGATGGATTGATGCTATCTAATTTTGCACTTGAACAACAACTGCATACGGCTAGACAAGAGCTTAGCCATGCCTTGTACCAGCATGATGCTGCATGTCGTGTGATCGCGAGGCTTAAAAAAGAAAGGGACGAAGCTAGGTCATTACTTGCTCAAGCTGAAAGGCAAATGCCTGGTGTAGGATCAGCACCAGTTGTAAATGCTTCTATCCTGGAGGATGTTATTGTCGCTACAGGCGCTGAAGATGAAGATTTGGGCCCTGATGGAAAAAGAATGCGCCCGGGAATAACTACTAGTATCATCTCTGAGCTTACAGAGTGTAATGCTGCACTGTCACAGCAGCGGAAAAAGCGACAGATACCAGCAACTTTGGCTCCCGTTGATCGTTTGGAGGGTTATACCCAGATATCTAGTCATCCTCTCCATAAAACGAGCAAACCAGGCATTTTATCTCTAGACATTCATTACAGCAAGGACTTAGTTGCTACTGGTGGGCTTGACTCCAATGCTGTAATTTTTGATCGACCTTCAGGACAGATTTTATCAACACTTACTGGTCATTCTAAGAAGGTGACTAGCGTAAAGTTTGTGGGACAAGAGGCATTATTCTTGACCGGTTCGGCTGATAAGACTGTTCGTATTTGGCAAAGCTCTGATGATGGGAACTATAATTGTAGACATATCTTAAAAGATCATACTGCTGAGGTCCAAGCAGTTACCGTTCATGCTACAAACAACTACTTTGTGACCGCATCTCTTGATAACACATGGTGTTTTTATGAAATTGCTTCTGGATTATGTCTAGCACAGGTCGCTGACACTTCAGGAACGGAGGGCTACACATCAGCAGCCTTTCATCCTGACGGTCTTATCCTTGGAACAGGTACATCTGAGGCTCTTGTTAAGATTTGGGATGTAAAAAGTCAGACAAATGTTGCCAGATTTGATGGACATGTTGGAGCTGTAACTGCAATTTCTTTTTCAGAAAATGGTTACTTCCTTGCGACTGCTGCTCATGATGGTGTAAAGCTGTGGGATCTACGCAAATTGAAGAACTTCCGGACATTTTCTCCATATGATTCAGATACACCATCAAACTCTGTTGAATTTGACCAAAGTGGAAGTTACCTTGCAATTGGAGGATCAGATACAAGGGTTTACCAAGTTGCAAGCGTTAAATCTGAATGGAATTGTATCAAGACCATTCCAGATTTGTCTGGAACAAGTAAAGCAACGTGCATCAAATTCGGTCCAGATGCAACATACTTAGCGGTAGGATCAATGGATCGAAACCTCCGGATATTTGGTTTGCCCGGGGAAGATGGTCCAACTGAGTCATGA 1569 43.66 KVSGEVPEEPVVSTKSGLLYEKRLIERHILDYGKCPITGESLTMDDVVPIKTGKIVKPRPVQAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQAERQMPGVGSAPVVNASILEDVIVATGAEDEDLGPDGKRMRPGITTSIISELTECNAALSQQRKKRQIPATLAPVDRLEGYTQISSHPLHKTSKPGILSLDIHYSKDLVATGGLDSNAVIFDRPSGQILSTLTGHSKKVTSVKFVGQEALFLTGSADKTVRIWQSSDDGNYNCRHILKDHTAEVQAVTVHATNNYFVTASLDNTWCFYEIASGLCLAQVADTSGTEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQTNVARFDGHVGAVTAISFSENGYFLATAAHDGVKLWDLRKLKNFRTFSPYDSDTPSNSVEFDQSGSYLAIGGSDTRVYQVASVKSEWNCIKTIPDLSGTSKATCIKFGPDATYLAVGSMDRNLRIFGLPGEDGPTES 522
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6426976 6433757 + Bda005393.1 Bda11g00647 15755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00647 522 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 260 292 - -
Bda11g00647 522 ProSiteProfiles Trp-Asp (WD) repeats profile. 260 292 IPR001680 GO:0005515
Bda11g00647 522 ProSiteProfiles U-box domain profile. 1 67 IPR003613 GO:0004842|GO:0016567
Bda11g00647 522 Pfam Prp19/Pso4-like 63 128 IPR013915 -
Bda11g00647 522 SUPERFAMILY RING/U-box 2 50 - -
Bda11g00647 522 ProSiteProfiles Trp-Asp (WD) repeats profile. 391 431 IPR001680 GO:0005515
Bda11g00647 522 SMART WD40_4 298 337 IPR001680 GO:0005515
Bda11g00647 522 SMART WD40_4 208 250 IPR001680 GO:0005515
Bda11g00647 522 SMART WD40_4 253 292 IPR001680 GO:0005515
Bda11g00647 522 SMART WD40_4 471 512 IPR001680 GO:0005515
Bda11g00647 522 SMART WD40_4 340 381 IPR001680 GO:0005515
Bda11g00647 522 SMART WD40_4 384 422 IPR001680 GO:0005515
Bda11g00647 522 SMART WD40_4 425 464 IPR001680 GO:0005515
Bda11g00647 522 Pfam WD domain, G-beta repeat 473 511 IPR001680 GO:0005515
Bda11g00647 522 Pfam WD domain, G-beta repeat 254 291 IPR001680 GO:0005515
Bda11g00647 522 Pfam WD domain, G-beta repeat 387 422 IPR001680 GO:0005515
Bda11g00647 522 CDD RING-Ubox_PRP19 2 51 - -
Bda11g00647 522 SMART Ubox_2 3 63 IPR003613 GO:0004842|GO:0016567
Bda11g00647 522 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 391 424 - -
Bda11g00647 522 PANTHER PRE-MRNA-PROCESSING FACTOR 19 1 522 IPR038959 GO:0000398|GO:0000974|GO:0006281|GO:0061630
Bda11g00647 522 SUPERFAMILY WD40 repeat-like 220 511 IPR036322 GO:0005515
Bda11g00647 522 Coils Coil 112 132 - -
Bda11g00647 522 CDD WD40 224 511 - -
Bda11g00647 522 ProSiteProfiles Trp-Asp (WD) repeats profile. 349 390 IPR001680 GO:0005515
Bda11g00647 522 Gene3D - 201 513 IPR015943 GO:0005515
Bda11g00647 522 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 57 IPR013083 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda11g00647 Bda13g00041 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g00647 Bda-Chr11:6426976 Bda04g00146 Bda-Chr4:3969533 1.76E-11 dispersed
Bda15g00401 Bda-Chr15:6913794 Bda11g00647 Bda-Chr11:6426976 4.28E-11 transposed
Bda11g00647 Bda-Chr11:6426976 Bda13g00041 Bda-Chr13:611808 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00647 K10599 - vvi:100249408 892.493