Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda11g00647 | AAAGTCTCCGGTGAGGTGCCGGAAGAGCCCGTTGTTTCTACGAAATCCGGTTTGCTCTACGAGAAGCGTTTAATCGAGCGGCATATATTGGACTATGGAAAATGCCCAATCACCGGAGAATCACTTACCATGGATGATGTTGTTCCAATTAAAACTGGCAAGATAGTAAAGCCCAGACCTGTTCAAGCTGCTAGCATTCCTGGCATGTTAGGAATGTTCCAGAATGAATGGGATGGATTGATGCTATCTAATTTTGCACTTGAACAACAACTGCATACGGCTAGACAAGAGCTTAGCCATGCCTTGTACCAGCATGATGCTGCATGTCGTGTGATCGCGAGGCTTAAAAAAGAAAGGGACGAAGCTAGGTCATTACTTGCTCAAGCTGAAAGGCAAATGCCTGGTGTAGGATCAGCACCAGTTGTAAATGCTTCTATCCTGGAGGATGTTATTGTCGCTACAGGCGCTGAAGATGAAGATTTGGGCCCTGATGGAAAAAGAATGCGCCCGGGAATAACTACTAGTATCATCTCTGAGCTTACAGAGTGTAATGCTGCACTGTCACAGCAGCGGAAAAAGCGACAGATACCAGCAACTTTGGCTCCCGTTGATCGTTTGGAGGGTTATACCCAGATATCTAGTCATCCTCTCCATAAAACGAGCAAACCAGGCATTTTATCTCTAGACATTCATTACAGCAAGGACTTAGTTGCTACTGGTGGGCTTGACTCCAATGCTGTAATTTTTGATCGACCTTCAGGACAGATTTTATCAACACTTACTGGTCATTCTAAGAAGGTGACTAGCGTAAAGTTTGTGGGACAAGAGGCATTATTCTTGACCGGTTCGGCTGATAAGACTGTTCGTATTTGGCAAAGCTCTGATGATGGGAACTATAATTGTAGACATATCTTAAAAGATCATACTGCTGAGGTCCAAGCAGTTACCGTTCATGCTACAAACAACTACTTTGTGACCGCATCTCTTGATAACACATGGTGTTTTTATGAAATTGCTTCTGGATTATGTCTAGCACAGGTCGCTGACACTTCAGGAACGGAGGGCTACACATCAGCAGCCTTTCATCCTGACGGTCTTATCCTTGGAACAGGTACATCTGAGGCTCTTGTTAAGATTTGGGATGTAAAAAGTCAGACAAATGTTGCCAGATTTGATGGACATGTTGGAGCTGTAACTGCAATTTCTTTTTCAGAAAATGGTTACTTCCTTGCGACTGCTGCTCATGATGGTGTAAAGCTGTGGGATCTACGCAAATTGAAGAACTTCCGGACATTTTCTCCATATGATTCAGATACACCATCAAACTCTGTTGAATTTGACCAAAGTGGAAGTTACCTTGCAATTGGAGGATCAGATACAAGGGTTTACCAAGTTGCAAGCGTTAAATCTGAATGGAATTGTATCAAGACCATTCCAGATTTGTCTGGAACAAGTAAAGCAACGTGCATCAAATTCGGTCCAGATGCAACATACTTAGCGGTAGGATCAATGGATCGAAACCTCCGGATATTTGGTTTGCCCGGGGAAGATGGTCCAACTGAGTCATGA | 1569 | 43.66 | KVSGEVPEEPVVSTKSGLLYEKRLIERHILDYGKCPITGESLTMDDVVPIKTGKIVKPRPVQAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQAERQMPGVGSAPVVNASILEDVIVATGAEDEDLGPDGKRMRPGITTSIISELTECNAALSQQRKKRQIPATLAPVDRLEGYTQISSHPLHKTSKPGILSLDIHYSKDLVATGGLDSNAVIFDRPSGQILSTLTGHSKKVTSVKFVGQEALFLTGSADKTVRIWQSSDDGNYNCRHILKDHTAEVQAVTVHATNNYFVTASLDNTWCFYEIASGLCLAQVADTSGTEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQTNVARFDGHVGAVTAISFSENGYFLATAAHDGVKLWDLRKLKNFRTFSPYDSDTPSNSVEFDQSGSYLAIGGSDTRVYQVASVKSEWNCIKTIPDLSGTSKATCIKFGPDATYLAVGSMDRNLRIFGLPGEDGPTES | 522 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 6426976 | 6433757 | + | Bda005393.1 | Bda11g00647 | 15755 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda11g00647 | 522 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 260 | 292 | - | - | |
Bda11g00647 | 522 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 260 | 292 | IPR001680 | GO:0005515 | |
Bda11g00647 | 522 | ProSiteProfiles | U-box domain profile. | 1 | 67 | IPR003613 | GO:0004842|GO:0016567 | |
Bda11g00647 | 522 | Pfam | Prp19/Pso4-like | 63 | 128 | IPR013915 | - | |
Bda11g00647 | 522 | SUPERFAMILY | RING/U-box | 2 | 50 | - | - | |
Bda11g00647 | 522 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 391 | 431 | IPR001680 | GO:0005515 | |
Bda11g00647 | 522 | SMART | WD40_4 | 298 | 337 | IPR001680 | GO:0005515 | |
Bda11g00647 | 522 | SMART | WD40_4 | 208 | 250 | IPR001680 | GO:0005515 | |
Bda11g00647 | 522 | SMART | WD40_4 | 253 | 292 | IPR001680 | GO:0005515 | |
Bda11g00647 | 522 | SMART | WD40_4 | 471 | 512 | IPR001680 | GO:0005515 | |
Bda11g00647 | 522 | SMART | WD40_4 | 340 | 381 | IPR001680 | GO:0005515 | |
Bda11g00647 | 522 | SMART | WD40_4 | 384 | 422 | IPR001680 | GO:0005515 | |
Bda11g00647 | 522 | SMART | WD40_4 | 425 | 464 | IPR001680 | GO:0005515 | |
Bda11g00647 | 522 | Pfam | WD domain, G-beta repeat | 473 | 511 | IPR001680 | GO:0005515 | |
Bda11g00647 | 522 | Pfam | WD domain, G-beta repeat | 254 | 291 | IPR001680 | GO:0005515 | |
Bda11g00647 | 522 | Pfam | WD domain, G-beta repeat | 387 | 422 | IPR001680 | GO:0005515 | |
Bda11g00647 | 522 | CDD | RING-Ubox_PRP19 | 2 | 51 | - | - | |
Bda11g00647 | 522 | SMART | Ubox_2 | 3 | 63 | IPR003613 | GO:0004842|GO:0016567 | |
Bda11g00647 | 522 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 391 | 424 | - | - | |
Bda11g00647 | 522 | PANTHER | PRE-MRNA-PROCESSING FACTOR 19 | 1 | 522 | IPR038959 | GO:0000398|GO:0000974|GO:0006281|GO:0061630 | |
Bda11g00647 | 522 | SUPERFAMILY | WD40 repeat-like | 220 | 511 | IPR036322 | GO:0005515 | |
Bda11g00647 | 522 | Coils | Coil | 112 | 132 | - | - | |
Bda11g00647 | 522 | CDD | WD40 | 224 | 511 | - | - | |
Bda11g00647 | 522 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 349 | 390 | IPR001680 | GO:0005515 | |
Bda11g00647 | 522 | Gene3D | - | 201 | 513 | IPR015943 | GO:0005515 | |
Bda11g00647 | 522 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 57 | IPR013083 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bda11g00647 | Bda13g00041 | BCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda11g00647 | Bda-Chr11:6426976 | Bda04g00146 | Bda-Chr4:3969533 | 1.76E-11 | dispersed | |
Bda15g00401 | Bda-Chr15:6913794 | Bda11g00647 | Bda-Chr11:6426976 | 4.28E-11 | transposed | |
Bda11g00647 | Bda-Chr11:6426976 | Bda13g00041 | Bda-Chr13:611808 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda11g00647 | K10599 | - | vvi:100249408 | 892.493 |