Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00659 AGAAGAGAGAGCTCCATGAGGAAATTGGAGCTGTGGACATTTGTGATCCTAACGCAAATACTGTCACTGGCAGCCAAGAAACGCATACCCACTACTCTGGAAGGCCCATTTAAGCCCGTCACTCGCCGCTTTGATCCGTCGCTACGGCGAGGCAGCGACGATCTGCCCATGGACAGCCCCAGGCTGAAGAAAAACGTCTCCTCCAACTTTCCAGAACAGATAGCTCTCGCCATTTCTACTCCCACTTCAATGTGGGTCTCTTGGGCGACGGGTACTGATTTACATGATTCTGAGTTGGCTCCGATTGCTGCAGGGGACGCCCAGATTGGTTGCGATGTGACTCCTCTTGATCCTTCATCGGTTGCGAGCGAGGTGTGGTATGGGAAACAAAGTGGCAACTATACCAGTAGAAGAAAAGGGTTTTCCTCGATTTACAGCCAGTTATACCCATATGAAGGACTACTAAATTACTCATCCCCCATCATTCACCATGTCAGGATTGACGGTCTTGAGCCTGGATCCAAGTATTATTATAGATGTGGAGATAGCTCTCTTTCGGCTATGAGCGAAGAACTTGCCTTTGAAACACTTCCAACACCAAGCTCCAGCTCATATCCTCGCAGAATAGCAGTAGTTGGAGATCTGGGTCTCACTAGAAACTCGACCAAAACCATAGCTCACTTGGCTCAGAATGACCCTTCACTGATTCTAATGGTGGGCGACTTGAGCTATGCAAATCAGTACCTCACTACAGGAGGCAAAGGAGCTCCATGTTACTCGTGTGCATTTCCTGATACGCCTATCAGAGAGACGTATCAGCCTCGTTGGGATGGATGGGGCAGGTTCATGGAGCCACTTGTATCCCGAGTTCCCATGATGGTGATTGAGGGAAATCATGAGATCGAGCCTCAAATTTCTGGGATCACATTCAAATCATATGTGACAAGATTTGCAGTTCCCTCCAACGAATCGGGCTCTACCAGTAACCTTTACTACTCTTTTGATGCCGGAGGAGTACATTTTCTCATGCTAGGCGCATACGTCGATTACAATGCAACTGGCGAGAAATCAATGATCAAGAAGCGTTACATGTATTTGACAGAGGAAATATTGAAGGATAATCCTCAAGTTTGTGCTTACGAGGCCCCCTCGCTGGACGCCAGGCAAGACATGGTAGTGGTCGAAGTGCCGAAGCTGGGTAAAGAAGCAGCTGCCAAGGCTATCAAAGAATGGGGGCAACCCAAATCTAAAATCACCCACGTCGTCTTCTGCACCACCAGCGGCGTCGACATGCCCGGAGCGGACTACCAACTCACCAAGCTCCTCGGCCTCCGCCCATCCGTCAAGCGCCTCATGATGTACCAGCAAGGCTGCTTCGCCGGCGGCACTGTTCTCCGACTTGCCAAGGATTTGGCTGAGAATAACAAGGGTGCTCGGGTCCTCGTAGTCTGCTCGGAGATCACCGCTGTCACTTTCCGTGGGCCGAGCGAAACCCACCTCGACAGTCTGGTCGGGCAAGCGTTGTTCGGAGACGGCGCAGCCGCTATTATAATCGGTGCAGACCCAGTCCCATCAGTGGAGAAGCCATTGTTCGAGCTAGTCTCCGCCGCTCAAACCATTCTTCCAGACAGCGACGGAGCGATCGACGGGCATTTACGGGAGGTGGGCCTGACGTTTCATCTCCTAAAGGACGTTCCCGGCCTCATTTCCAAGAACATCGAGAAAAGCCTGGTCGAGGCCTTCAAGCCATTAGGTATCTCGGACTGGAACTCCCTCTTCTGGATAGCCCACCCCGGTGGTCCTGCGATTTTAGACCAAGTGGAAGCGAAGCTGAACCTGGACCCAGAAAAGCTCCGATCCACCAGACACGTTCTGGGTGAGTACGGAAACATGTCAAGCGCCTGTGTGCTGTTCATTCTGGATGAGATGCGAAGGAAGTCGAAGGAGGATGGGCTGACGACCACGGGGGAAGGGCTGGAGTGGGGCGTGCTATTTGGGTTCGGGCCAGGTCTGACGGTGGAGACAGTTGTGCTCCACAGTGTGGCTGCCTAG 2052 52.19 RRESSMRKLELWTFVILTQILSLAAKKRIPTTLEGPFKPVTRRFDPSLRRGSDDLPMDSPRLKKNVSSNFPEQIALAISTPTSMWVSWATGTDLHDSELAPIAAGDAQIGCDVTPLDPSSVASEVWYGKQSGNYTSRRKGFSSIYSQLYPYEGLLNYSSPIIHHVRIDGLEPGSKYYYRCGDSSLSAMSEELAFETLPTPSSSSYPRRIAVVGDLGLTRNSTKTIAHLAQNDPSLILMVGDLSYANQYLTTGGKGAPCYSCAFPDTPIRETYQPRWDGWGRFMEPLVSRVPMMVIEGNHEIEPQISGITFKSYVTRFAVPSNESGSTSNLYYSFDAGGVHFLMLGAYVDYNATGEKSMIKKRYMYLTEEILKDNPQVCAYEAPSLDARQDMVVVEVPKLGKEAAAKAIKEWGQPKSKITHVVFCTTSGVDMPGADYQLTKLLGLRPSVKRLMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPSETHLDSLVGQALFGDGAAAIIIGADPVPSVEKPLFELVSAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLVEAFKPLGISDWNSLFWIAHPGGPAILDQVEAKLNLDPEKLRSTRHVLGEYGNMSSACVLFILDEMRRKSKEDGLTTTGEGLEWGVLFGFGPGLTVETVVLHSVAA 683
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6511165 6516641 + Bda005405.2 Bda11g00659 15767

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00659 683 SUPERFAMILY Purple acid phosphatase, N-terminal domain 53 198 IPR008963 GO:0003993|GO:0046872
Bda11g00659 683 SUPERFAMILY Metallo-dependent phosphatases 206 352 IPR029052 -
Bda11g00659 683 Pfam Purple acid Phosphatase, N-terminal domain 71 196 IPR015914 GO:0003993|GO:0046872
Bda11g00659 683 PANTHER HYDROXYMETHYLGLUTARYL-COA SYNTHASE 349 682 IPR011141 GO:0009058|GO:0016747
Bda11g00659 683 Pfam Calcineurin-like phosphoesterase 208 373 IPR004843 GO:0016787
Bda11g00659 683 ProSitePatterns Chalcone and stilbene synthases active site. 450 466 IPR018088 GO:0009058|GO:0016746
Bda11g00659 683 Gene3D - 535 683 IPR016039 GO:0016746
Bda11g00659 683 Gene3D - 387 534 IPR016039 GO:0016746
Bda11g00659 683 SUPERFAMILY Thiolase-like 529 680 IPR016039 GO:0016746
Bda11g00659 683 PANTHER CHALCONE SYNTHASE 2 349 682 - -
Bda11g00659 683 Pfam Chalcone and stilbene synthases, N-terminal domain 354 522 IPR001099 -
Bda11g00659 683 Pfam Chalcone and stilbene synthases, C-terminal domain 532 681 IPR012328 -
Bda11g00659 683 Gene3D - 70 199 - -
Bda11g00659 683 MobiDBLite consensus disorder prediction 40 63 - -
Bda11g00659 683 Gene3D - 202 374 IPR029052 -
Bda11g00659 683 SUPERFAMILY Thiolase-like 352 527 IPR016039 GO:0016746
Bda11g00659 683 MobiDBLite consensus disorder prediction 43 60 - -
Bda11g00659 683 CDD CHS_like 355 678 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00659 K00660 CHS; chalcone synthase [EC:2.3.1.74] - jre:108988452 603.594
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g00659 Bda-Chr11:6511165 Bda11g01904 Bda-Chr11:54246723 0 dispersed
Bda14g00570 Bda-Chr14:4342318 Bda11g00659 Bda-Chr11:6511165 3.10E-25 dispersed
Bda04g00477 Bda-Chr4:53138435 Bda11g00659 Bda-Chr11:6511165 3.53E-120 transposed
Bda11g00659 Bda-Chr11:6511165 Bda03g01128 Bda-Chr3:11830793 1.23E-66 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g848 . . . . . . . . . . . Cma14g01873 . Car14g01675 Sed12g0408 . Cpe03g01571 Bhi01g00061 Tan10g0557 Cmetu06g2760 . . . Lcy11g1746 . . . . . . . . . . Cone4ag0384 Lsi05g01814 Csa02g00942 . Cme06g00409 . Blo07g00296 Bda11g00659 . . . . Bma06g01625 . . Cmo14g01919 . . . . . . . . . . . . . Cla05g00371 Cam05g0404 Cec05g0409 Cco05g0409 Clacu05g0399 Cmu05g0384 Cre05g0446 . Csa03g01127 Chy06g00394 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000620 7 3 7 12 3 2 1 2 2 1 1 2 3 2 1 2 2 4 3 2 1 3 2 2 2 6 2 4 3 16 103
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g00659 Bda_Chr11 FPKM 9.603789 8.065318 5.586374 6.917952 9.490486 7.506828 9.783532 11.04733 11.881989