Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00660 ATGGCAGCCATTGATGTATCCAAGTATGCACATAGCTCAGTGCACAAGGCCATAGCCACGAAGGATTACACAAATCTCCGAAGAATTCTAGGTGGCCTCCCAAGACTTTGCAATCCATTGGAGATTCAGACAGAAACTGCTTCACTGGCCGAAGAGGAGAAGGCAGATGCGATCTCTGCGGTGATTGATAGACGGGATGTTCCCAATCGAGACACTCCACTTCATTTAGCCGTAAAATTTGGGGATGAAACAGCCACTGAAATGCTTATGGTTGCAGGGGCAGATTGGAGCTTGCAGAACGAACAGGGATGGAGTGCACTCCAAGAGGCAATATGCAATAGAGAAGAACGAATTGCTATGATAATAGTTAGGCATTATCAGCCACTAGCATGGGCAAAATGGTGTAGAAGATTGCATCGCTTGGTCGGGACAATGCAAAGAATGCGAGATTTTTACATGGAAATCACTTTTCACTTTGAAAGCTCTGTCATTCCCTTCATTTCAAGGATTGCTCCTTCGGATACTTACAAGATCTGGAAGAGAGGAGCCAATTTGAGGGCAGACATGACCTTAGCTGGTTTTGATGGTTTTCGAATTCAGCGTTCAGACCAGAGTGTTCTTTTTCTTGGCGATGGATCTGAGGATGGGAAGATACCATCTGGTTCACTATGTATGGTGTCTCACAAGGAAAAGGAGGTGATGAATGCTTTGGATGGGGCTGGTTCTCAAGCTGCTGAAGATGAAGTTAGGCAAGAAGTGGCTGCAATGTCACAGACTAATATATTTAGACCTGGAATTGATGTTACTCAAGCTGTTCTGTTGCCTCAGTTAACTTGGAGACGCCAGGAGAAGACGGAAATGATAGGACCGTGGAAGGGTAAGGTATATGACATGCACAATGTGGTTGTCAGCATCAAGTCTAGGCGGGTTCCTGGAGCTATGACAGATGATGAGTTTTTCTCATCTTGTAATGACAATGAAACAGAAAGTGAGGAACTAGATGACATTTTGACAGAAGAAGAGAAAAGGCAACTTGAAAATGCTCTCAAGTTGGGTTCATCTGAGTTGACAGTGGAAAATGGTGAAGGAAATATTGGAAACCGCTATAATTGTTATGAGCATAGTGAAATTCCCATCGAAGACACAAATGGATGTATGAATGGGGAGTTCAAGCAGGAAAAGAAAGGATGGTTCAATGGTTGGAGAAAACGGGAATCCAAACCTGAAGGGCAGAAGAAGAATGTTCCTCCAAGAAGCTCCCTCTGTGTAGATGAGAAGGTAAGTGATCTTCTTGGGGAATCTCCTCCAGAGAATCAGAACAAAGCTGGAAGACATTCTGTGGATATTGTGACGAGGGGAGAGGAGCTGCGAAGAGGAAGGGAAGCCAAATCATCTTCCTCTTTGAGTACTGAAAGTAGAAATAATAACAAGGATGGGAACCGCGAGAATGAGTACAAGAAAGGACTGAGACCTGTTCTCTGGCTTGCCCCAAGCTTTCCGTTGCAGACAGAGGAACTCTTGCCATTGCTTGACATTCTTGCCAACAAGGTCAAGGCAATTCGCCGTTTAAGAGAACTACTAACCACAAAACTTCCAATGGGAACCTTTCCGGTCAAGGTTGCCATTCCAGTTGTTCCCACTATCAGAGTGATAGTCACTTTTACTAAGTTTGAAGAGTTGCAGCCCATGGATGAATTCACAACTCCCCCGTCAAGCCCTCCTGGTGCGGGCAGAAACAGCCCTGCATCGACAAATTCGAATGGGACGTCGTGGTTGCAGTGGATAAAAGGTCCTTATCAACGCCCCAACTCCTTCTCGGGCAGTTCGAGCAGTAGGATAGAGAACATTCAAGACCCTTTTACAATCCCGCATGATTATGCTTGGATCACCGCAGAAGAAAAGAAAAGGAAAATGCAGGAGAAAAACAGATCAAAGCGAAGCAGAAACCAGAACCGGCAGAGTTGA 1965 45.09 MAAIDVSKYAHSSVHKAIATKDYTNLRRILGGLPRLCNPLEIQTETASLAEEEKADAISAVIDRRDVPNRDTPLHLAVKFGDETATEMLMVAGADWSLQNEQGWSALQEAICNREERIAMIIVRHYQPLAWAKWCRRLHRLVGTMQRMRDFYMEITFHFESSVIPFISRIAPSDTYKIWKRGANLRADMTLAGFDGFRIQRSDQSVLFLGDGSEDGKIPSGSLCMVSHKEKEVMNALDGAGSQAAEDEVRQEVAAMSQTNIFRPGIDVTQAVLLPQLTWRRQEKTEMIGPWKGKVYDMHNVVVSIKSRRVPGAMTDDEFFSSCNDNETESEELDDILTEEEKRQLENALKLGSSELTVENGEGNIGNRYNCYEHSEIPIEDTNGCMNGEFKQEKKGWFNGWRKRESKPEGQKKNVPPRSSLCVDEKVSDLLGESPPENQNKAGRHSVDIVTRGEELRRGREAKSSSSLSTESRNNNKDGNRENEYKKGLRPVLWLAPSFPLQTEELLPLLDILANKVKAIRRLRELLTTKLPMGTFPVKVAIPVVPTIRVIVTFTKFEELQPMDEFTTPPSSPPGAGRNSPASTNSNGTSWLQWIKGPYQRPNSFSGSSSSRIENIQDPFTIPHDYAWITAEEKKRKMQEKNRSKRSRNQNRQS 654
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6530296 6532982 + Bda005407.1 Bda11g00660 15768

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00660 654 MobiDBLite consensus disorder prediction 563 589 - -
Bda11g00660 654 Pfam GPCR-chaperone 186 627 IPR021832 -
Bda11g00660 654 Gene3D - 38 137 IPR036770 -
Bda11g00660 654 ProSiteProfiles Ankyrin repeat region circular profile. 69 101 - -
Bda11g00660 654 ProSiteProfiles Ankyrin repeat profile. 69 101 IPR002110 GO:0005515
Bda11g00660 654 MobiDBLite consensus disorder prediction 447 464 - -
Bda11g00660 654 MobiDBLite consensus disorder prediction 633 647 - -
Bda11g00660 654 PANTHER UNCHARACTERIZED WITH ANKYRIN REPEAT DOMAIN 3 648 IPR021832 -
Bda11g00660 654 SUPERFAMILY Ankyrin repeat 62 128 IPR036770 -
Bda11g00660 654 MobiDBLite consensus disorder prediction 633 654 - -
Bda11g00660 654 PANTHER BNAA08G28070D PROTEIN 3 648 - -
Bda11g00660 654 MobiDBLite consensus disorder prediction 399 484 - -
Bda11g00660 654 SMART ANK_2a 69 98 IPR002110 GO:0005515
Bda11g00660 654 SMART ANK_2a 102 131 IPR002110 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00660 K21437 ANKRD13; ankyrin repeat domain-containing protein 13 - jre:108988453 1072.38
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g00660 Bda-Chr11:6530296 Bda12g00343 Bda-Chr12:3929792 0 dispersed
Bda11g01903 Bda-Chr11:54240705 Bda11g00660 Bda-Chr11:6530296 0 transposed
Bda11g00660 Bda-Chr11:6530296 Bda13g00021 Bda-Chr13:395009 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g882 . . . . . . . . . . Cma06g01259 Cma14g01914 Car06g01082 Car14g01683 . Cpe08g00386 Cpe03g01613 . . . . . . . . . . . . . . . . . . Lsi05g01820 . . . . Blo07g00297 Bda11g00660 . . . Bma02g00733 Bma06g01627 . Cmo06g01269 Cmo14g01968 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000559 4 5 4 4 3 3 5 3 3 3 3 3 5 3 3 5 3 4 5 3 3 3 3 4 3 3 2 7 4 1 107
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g00660 Bda_Chr11 FPKM 1.161164 1.296417 6.618628 6.008373 17.241714 12.746833 14.397793 0.112277 0.047576