Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00674 ATGAATCACTTGACTATCGAGACCGAAGATGCATTTTCAAGTTTGCTTGAACATGCGGCTAATAATGACATTGAAGGCTTCAAAAAATCAATTGAACTTGATGTTTCTGCAGTTGATGAGATTGGTCACTGGTATGGTCGCCAAAAGAGGTCAAAGCAGATGGTTTATGAGTATAGAACACCTCTAATGGTTGCTGCTACTTATGGAAGCATTGATGTCATAAAGTTGATTCTTTCTTTATCTCATGCTGATATAAATCGATCTGCTGGCTTTGACAAAAGCACCGTTCTTCACTGTGCAGCCTCAGGTGGGGCTGCGAATGCAACTGATGCTGTGAAACTGCTTTTGGCTGCTGGCAGTGATCCAAATTTGGTTGATGCTAATGGTCATCGTCCTCTTGATGTTATTGATGTAATCCCGAAACTTCAGAATGTCAAAAAGGCCCTTGAAGAACTCCTTTTATCCAATGTTTCTTCTGCCAGTTCATGCAATCTTAGAATCTCAACTTGTCACTTAACTTCTAATTCTCCTTCTCTTCCATCTTCTCCTGTACAAGGGTTGCTGCCTACTTCTGAGTTTGCTTCTTCACCAACAAAGTCTAAATTCTCCGATTTCTCAGTGTCGTCAGTGATAGAGAGAAAGGAATACCCTGTTGATCCATCTCTCCCAGACATCAAAAATAGCATTTATTCCACTGATGATTTTAGAATGTATTCATTCAAGGTCCGGCCTTGTTCACGTGCATATTCTCATGATTGGACCGAGTGCCCTTTTGTCCATCCAGGAGAGAATGCTCGAAGAAGGGATCCAAGGAAGTTCCATTATAGTTGTGTTCCATGTCCTGAATTTCGAAAGGGCGCCTGTAGACGTGGAGATATGTGCGAATATGCTCACGGGGTTTTTGAATGCTGGCTTCACCCAGCACAGTACAGAACCCGTCTTTGTAAGGATGGAACAAATTGTGTTAGGAGAGTTTGTTTTTTTGCACATACTGCTGAAGAACTTCGTCCGTTATATGTTTCCACTGGGTCTGCTGTTCCATCTCCTCGTTCAGGTAGTCTTGGAGCTGTTGATTATGCTGCAGCTATGAACCTCTTACCTGGTTCTCCATCTTCAAAGTCTGTCACTTCTCCTTCACCATTTACTCCTCCCATGTCTCCGTCTGCCAATAGCATGCAACACTCATCTGTAAGTTGGCCCCAACCAAATGTCCCTGCTTTGCATCTCTCTGTGGGAAATCTTCAGTCCAGTCGCTTAAGATCGTCCCTGAATGCAAGAGATATTCCAGTTGATGACTTTGATTTGCTTCAAGATTTTGATATGCAGCACCAACAGCTCCTGAATGATTACTGTGGTGTTTCTCAATTGTCTGTAATTTCTATGTCCGCCAATCACTCTGGAAGGCTGAAAACTCTGACCCCTTCAAACTTGGACGACCTCTTCACTACGGAAAGTTCATCTCCTCGGCACTCAGATCAGGCATTAGCTTCAACTGTTTTTTCTCCAACACATAAATCAGCTGTACTTAATCAATTTCAGCAGCAGCAGAGTATGCTGTCTCCTATCAACACAAACTTTTCTCCAAAAAGTGTGGATCATCATCTATTGCATGCCTCTTTTGGGATTTCATCGTCAGAGAGGATGTCTCCACCGAATGCAGAACCTGTCTCACCAATTAGCTCCTGTTTATCCATGTTAGCTCAACGAGAGAATCCGCGACAATTTCGTAGCCTTAGCTCAAGGGAGCTCGGTTCCAGTTTCGCCTGTGTTGGTTCCCCATTGCACTCGTGGTCTACGGTTGAATCGCCCAATGATAATGTTGATTGGGTAACTAATACTGGTTATATGGGTAAGCTTCGCAGATCATCCTCATATGAGCTTGTGGACAATGGAGAAGAGCCAGATTTTTCATGGGTTCAGTCGCTTGTTAAAGACTCTCCTAGTGAGATGAAAGAAAAAGTAGCTCCAATTGACTCAGGTAGCATGAGTGTTGCCCCGTCTGAGGAGTGTTCAAATGATAACTTAAGCGGCTCGGTTGATCATGCTTTGTTGGCAGCATGGCTAGAGCAAATGCAGCTTGATCATCTCGTGGCTCAGGAAAAT 2103 43.51 MNHLTIETEDAFSSLLEHAANNDIEGFKKSIELDVSAVDEIGHWYGRQKRSKQMVYEYRTPLMVAATYGSIDVIKLILSLSHADINRSAGFDKSTVLHCAASGGAANATDAVKLLLAAGSDPNLVDANGHRPLDVIDVIPKLQNVKKALEELLLSNVSSASSCNLRISTCHLTSNSPSLPSSPVQGLLPTSEFASSPTKSKFSDFSVSSVIERKEYPVDPSLPDIKNSIYSTDDFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPEFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTNCVRRVCFFAHTAEELRPLYVSTGSAVPSPRSGSLGAVDYAAAMNLLPGSPSSKSVTSPSPFTPPMSPSANSMQHSSVSWPQPNVPALHLSVGNLQSSRLRSSLNARDIPVDDFDLLQDFDMQHQQLLNDYCGVSQLSVISMSANHSGRLKTLTPSNLDDLFTTESSSPRHSDQALASTVFSPTHKSAVLNQFQQQQSMLSPINTNFSPKSVDHHLLHASFGISSSERMSPPNAEPVSPISSCLSMLAQRENPRQFRSLSSRELGSSFACVGSPLHSWSTVESPNDNVDWVTNTGYMGKLRRSSSYELVDNGEEPDFSWVQSLVKDSPSEMKEKVAPIDSGSMSVAPSEECSNDNLSGSVDHALLAAWLEQMQLDHLVAQEN 701
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6761347 6763449 + Bda033050 Bda11g00674 15782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00674 701 ProSiteProfiles Ankyrin repeat profile. 92 127 IPR002110 GO:0005515
Bda11g00674 701 PANTHER ARM REPEAT CCCH-TYPE ZINC FINGER PROTEIN 1 698 - -
Bda11g00674 701 Gene3D - 276 337 - -
Bda11g00674 701 Pfam CCCH-type zinc finger 279 299 IPR041367 -
Bda11g00674 701 ProSiteProfiles Zinc finger C3H1-type profile. 279 301 IPR000571 GO:0046872
Bda11g00674 701 Pfam Ankyrin repeats (3 copies) 57 126 IPR002110 GO:0005515
Bda11g00674 701 SUPERFAMILY Ankyrin repeat 18 135 IPR036770 -
Bda11g00674 701 Gene3D - 4 163 IPR036770 -
Bda11g00674 701 ProSiteProfiles Ankyrin repeat region circular profile. 92 126 - -
Bda11g00674 701 MobiDBLite consensus disorder prediction 370 397 - -
Bda11g00674 701 PANTHER UNKEMPT FAMILY MEMBER 1 698 IPR045234 -
Bda11g00674 701 SMART c3hfinal6 274 300 IPR000571 GO:0046872
Bda11g00674 701 SMART c3hfinal6 309 332 IPR000571 GO:0046872
Bda11g00674 701 SMART ANK_2a 57 87 IPR002110 GO:0005515
Bda11g00674 701 SMART ANK_2a 92 124 IPR002110 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g01048 Bda-Chr5:58908454 Bda11g00674 Bda-Chr11:6761347 0 dispersed
Bda10g00722 Bda-Chr10:41641769 Bda11g00674 Bda-Chr11:6761347 0 dispersed
Bda11g00674 Bda-Chr11:6761347 Bda14g00247 Bda-Chr14:1738302 5.87E-147 dispersed
Bda13g00671 Bda-Chr13:7638333 Bda11g00674 Bda-Chr11:6761347 1.90E-60 dispersed
Bda11g00674 Bda-Chr11:6761347 Bda12g00153 Bda-Chr12:1353204 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16612 PF12796 Ank_2 1.50E-08 CL0465 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00674 - - jre:109007212 976.852