Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda11g00677 | ATGGCTGACCCTTACTCCAATTTCCTTACAGGTCTCTTCAAGCTCAATACAGTCCACCATAACCAACCTTCTCCTTTTCCAAACCCTCCGCCGCCACCTCTTTTCTCCCAACCCTTTTGCCACCACCAAACTCCGCCGCCTTCTCCTCCTCTCAGGCAGGCCCTCCCCCTCCTCAGCCTCACCCCACTCAACCAACAACAACAAGAAGATCAATTTCACCGCTCTTCCTCTACCGCCATGGAAGTGGATCAGAAAAGCTTCAAACAGAAAGAGGAGGAAGAAGAAGAAGAAGAAGAAGAAGACGATGACGTGGCTTCTGTAACCGTTGCCCTTCATATAGGTTTACCTAGCCCTAGTTCAGCTGAGCTTGCTTCTATTCTCTCTGCTTCTTCATCTGAAATCACTGATCTTAAAGATCATGGAGACGGAGATGATTTAGGGTACCCTATAAACAGGCTAAACAAGGGTCAGTATTGGATCCCTACTCCATCTCAGATTCTCATCGGTCCTACCCAGTTTTCTTGCCCTGTTTGCTATAAGACCTTCAACAGATATAATAACATGCAGATGCATATGTGGGGCCATGGATCTCAATATAGAAGAGGGCCAGAATCACTGAGAGGCACTCAACCAACAGGAATGCTAAGGCTTCCTTGCTACTGCTGTGCAACGGGATGCAGAAACAACATAGACCATCCGAGGGCTAAACCACTGAAAGATTTTAGAACCCTCCAAACACATTACAAAAGAAAGCACGGAATCAAGCCTTTTATGTGTAGAAAATGTGGGAAAGCCTTTGCAGTGAAAGGAGACTGGAGAACTCATGAGAAAAACTGTGGGAAACTTTGGTATTGTATCTGCGGGTCTGATTTTAAGCACAAGAGGTCTCTTAAAGACCATATAAAAGCTTTTGGCAAAGAGCATGCAGCTTATGGAATCGATGGGTTTGAAGAAGATGATGAACCGGCTTCTGAGGTTGAACAAGATAATGAATCTATGCAGTAG | 1005 | 45.37 | MADPYSNFLTGLFKLNTVHHNQPSPFPNPPPPPLFSQPFCHHQTPPPSPPLRQALPLLSLTPLNQQQQEDQFHRSSSTAMEVDQKSFKQKEEEEEEEEEEDDDVASVTVALHIGLPSPSSAELASILSASSSEITDLKDHGDGDDLGYPINRLNKGQYWIPTPSQILIGPTQFSCPVCYKTFNRYNNMQMHMWGHGSQYRRGPESLRGTQPTGMLRLPCYCCATGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVKGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGKEHAAYGIDGFEEDDEPASEVEQDNESMQ | 334 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 6795926 | 6798016 | + | Bda005424.1 | Bda11g00677 | 15785 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda11g00677 | 334 | SUPERFAMILY | beta-beta-alpha zinc fingers | 239 | 277 | IPR036236 | - | |
Bda11g00677 | 334 | MobiDBLite | consensus disorder prediction | 23 | 53 | - | - | |
Bda11g00677 | 334 | MobiDBLite | consensus disorder prediction | 66 | 83 | - | - | |
Bda11g00677 | 334 | SMART | c2h2final6 | 173 | 195 | IPR013087 | - | |
Bda11g00677 | 334 | SMART | c2h2final6 | 257 | 277 | IPR013087 | - | |
Bda11g00677 | 334 | Gene3D | Classic Zinc Finger | 235 | 312 | - | - | |
Bda11g00677 | 334 | Coils | Coil | 80 | 100 | - | - | |
Bda11g00677 | 334 | Coils | Coil | 323 | 334 | - | - | |
Bda11g00677 | 334 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 175 | 195 | IPR013087 | - | |
Bda11g00677 | 334 | SUPERFAMILY | beta-beta-alpha zinc fingers | 169 | 195 | IPR036236 | - | |
Bda11g00677 | 334 | Gene3D | Classic Zinc Finger | 172 | 195 | - | - | |
Bda11g00677 | 334 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 173 | 200 | IPR013087 | - | |
Bda11g00677 | 334 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 257 | 277 | IPR013087 | - | |
Bda11g00677 | 334 | MobiDBLite | consensus disorder prediction | 66 | 104 | - | - | |
Bda11g00677 | 334 | PANTHER | TESTA 1 PROTEIN, PUTATIVE-RELATED | 1 | 334 | - | - | |
Bda11g00677 | 334 | PANTHER | ZINC FINGER PROTEIN WIP2 | 1 | 334 | IPR043584 | GO:0003700|GO:0010468 | |
Bda11g00677 | 334 | MobiDBLite | consensus disorder prediction | 18 | 54 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda04g00737 | Bda-Chr4:56575275 | Bda11g00677 | Bda-Chr11:6795926 | 3.37E-125 | dispersed | |
Bda09g01411 | Bda-Chr9:45986994 | Bda11g00677 | Bda-Chr11:6795926 | 2.81E-103 | dispersed | |
Bda10g00726 | Bda-Chr10:41686118 | Bda11g00677 | Bda-Chr11:6795926 | 6.61E-84 | dispersed | |
Bda11g00677 | Bda-Chr11:6795926 | Bda11g00845 | Bda-Chr11:8325063 | 2.82E-26 | dispersed | |
Bda11g01137 | Bda-Chr11:11545511 | Bda11g00677 | Bda-Chr11:6795926 | 1.36E-102 | transposed | |
Bda11g00677 | Bda-Chr11:6795926 | Bda03g00598 | Bda-Chr3:4956923 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
16613 | None | None | None | None | Bda | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda11g00677 | - | - | jre:108986074 | 484.182 |