Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00677 ATGGCTGACCCTTACTCCAATTTCCTTACAGGTCTCTTCAAGCTCAATACAGTCCACCATAACCAACCTTCTCCTTTTCCAAACCCTCCGCCGCCACCTCTTTTCTCCCAACCCTTTTGCCACCACCAAACTCCGCCGCCTTCTCCTCCTCTCAGGCAGGCCCTCCCCCTCCTCAGCCTCACCCCACTCAACCAACAACAACAAGAAGATCAATTTCACCGCTCTTCCTCTACCGCCATGGAAGTGGATCAGAAAAGCTTCAAACAGAAAGAGGAGGAAGAAGAAGAAGAAGAAGAAGAAGACGATGACGTGGCTTCTGTAACCGTTGCCCTTCATATAGGTTTACCTAGCCCTAGTTCAGCTGAGCTTGCTTCTATTCTCTCTGCTTCTTCATCTGAAATCACTGATCTTAAAGATCATGGAGACGGAGATGATTTAGGGTACCCTATAAACAGGCTAAACAAGGGTCAGTATTGGATCCCTACTCCATCTCAGATTCTCATCGGTCCTACCCAGTTTTCTTGCCCTGTTTGCTATAAGACCTTCAACAGATATAATAACATGCAGATGCATATGTGGGGCCATGGATCTCAATATAGAAGAGGGCCAGAATCACTGAGAGGCACTCAACCAACAGGAATGCTAAGGCTTCCTTGCTACTGCTGTGCAACGGGATGCAGAAACAACATAGACCATCCGAGGGCTAAACCACTGAAAGATTTTAGAACCCTCCAAACACATTACAAAAGAAAGCACGGAATCAAGCCTTTTATGTGTAGAAAATGTGGGAAAGCCTTTGCAGTGAAAGGAGACTGGAGAACTCATGAGAAAAACTGTGGGAAACTTTGGTATTGTATCTGCGGGTCTGATTTTAAGCACAAGAGGTCTCTTAAAGACCATATAAAAGCTTTTGGCAAAGAGCATGCAGCTTATGGAATCGATGGGTTTGAAGAAGATGATGAACCGGCTTCTGAGGTTGAACAAGATAATGAATCTATGCAGTAG 1005 45.37 MADPYSNFLTGLFKLNTVHHNQPSPFPNPPPPPLFSQPFCHHQTPPPSPPLRQALPLLSLTPLNQQQQEDQFHRSSSTAMEVDQKSFKQKEEEEEEEEEEDDDVASVTVALHIGLPSPSSAELASILSASSSEITDLKDHGDGDDLGYPINRLNKGQYWIPTPSQILIGPTQFSCPVCYKTFNRYNNMQMHMWGHGSQYRRGPESLRGTQPTGMLRLPCYCCATGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVKGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGKEHAAYGIDGFEEDDEPASEVEQDNESMQ 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6795926 6798016 + Bda005424.1 Bda11g00677 15785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00677 334 SUPERFAMILY beta-beta-alpha zinc fingers 239 277 IPR036236 -
Bda11g00677 334 MobiDBLite consensus disorder prediction 23 53 - -
Bda11g00677 334 MobiDBLite consensus disorder prediction 66 83 - -
Bda11g00677 334 SMART c2h2final6 173 195 IPR013087 -
Bda11g00677 334 SMART c2h2final6 257 277 IPR013087 -
Bda11g00677 334 Gene3D Classic Zinc Finger 235 312 - -
Bda11g00677 334 Coils Coil 80 100 - -
Bda11g00677 334 Coils Coil 323 334 - -
Bda11g00677 334 ProSitePatterns Zinc finger C2H2 type domain signature. 175 195 IPR013087 -
Bda11g00677 334 SUPERFAMILY beta-beta-alpha zinc fingers 169 195 IPR036236 -
Bda11g00677 334 Gene3D Classic Zinc Finger 172 195 - -
Bda11g00677 334 ProSiteProfiles Zinc finger C2H2 type domain profile. 173 200 IPR013087 -
Bda11g00677 334 ProSiteProfiles Zinc finger C2H2 type domain profile. 257 277 IPR013087 -
Bda11g00677 334 MobiDBLite consensus disorder prediction 66 104 - -
Bda11g00677 334 PANTHER TESTA 1 PROTEIN, PUTATIVE-RELATED 1 334 - -
Bda11g00677 334 PANTHER ZINC FINGER PROTEIN WIP2 1 334 IPR043584 GO:0003700|GO:0010468
Bda11g00677 334 MobiDBLite consensus disorder prediction 18 54 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g00737 Bda-Chr4:56575275 Bda11g00677 Bda-Chr11:6795926 3.37E-125 dispersed
Bda09g01411 Bda-Chr9:45986994 Bda11g00677 Bda-Chr11:6795926 2.81E-103 dispersed
Bda10g00726 Bda-Chr10:41686118 Bda11g00677 Bda-Chr11:6795926 6.61E-84 dispersed
Bda11g00677 Bda-Chr11:6795926 Bda11g00845 Bda-Chr11:8325063 2.82E-26 dispersed
Bda11g01137 Bda-Chr11:11545511 Bda11g00677 Bda-Chr11:6795926 1.36E-102 transposed
Bda11g00677 Bda-Chr11:6795926 Bda03g00598 Bda-Chr3:4956923 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16613 None None None None Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00677 - - jre:108986074 484.182