Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00695 ATGAGGGAGGACGACTCTAATTGGTTCTCTAGGTGGGAGGAGGAGCTCCCATCTCCTGACGAATTAATGCCTTTATCCCAAACCCTAATCACCCCTGATCTCGCTCTCGCTTTTGAAATCCGAAGTCCATCCAATACTTGCCCCCAGCAAGGCCCTCCGCCTCCAACTCTGTCCAATCATTTAGCTTCCTCAGCTGCTGCTGGCTGCGGTGGAGCCGCTACTCAACCCAACTCCTCCGAGTTTGCAGATTCCGCCGATTTGGGTTCTGGAGCTGCTGGCGATGAACCGGCAAGGACCCTCAAGCGGCCGCGGCTTGTTTGGACGCCCCAGCTCCACAAGCGGTTCGTAGATGCGGTGGCGCATTTGGGGATCAAGAATGCTGTCCCAAAGACTATAATGCAGCTGATGAGTGTGGATGGGTTGACTAGAGAGAACGTGGCCAGCCATTTACAGAAGTACCGCCTTTATTTGAAACGAATGCAGGGATTATCAAGCGGAAGCGCTGGAGGAGCTGCCGTAGGAGTGGCCGGAGGAGTTGATCCTGCTACCGATCATTTGTTTGCCAGCTCTCCAGTTCCGCCGCATTTCTTGCACCCACACCCAGGCCGCCCCAGTTCCGACCATTTCTTGCCTTTTGTCCCAGTTGCAGCTTTGCAGCAGCACCACCATCACCACCAGCAGATTGCGGCAGCAGCTGCCCATCCTCAGCTGCAGCCTCCGTATCACAGACAGGTCGGCCATTTTGGGTCACCTCCGAATGGGCAATACGAGCATCCGTTTTTAGCGAGGCAGACTCAGCCAGTTCACAGGGTGGGTGCACAATTGCACAATTCGATGCTGAATCACGTCGAGGACTTGGAATCTGCTAACGCCACTGGAGGGAGGAAGGTTCTTACTCTGTTTCCAACTGGGGATGACTAA 921 54.83 MREDDSNWFSRWEEELPSPDELMPLSQTLITPDLALAFEIRSPSNTCPQQGPPPPTLSNHLASSAAAGCGGAATQPNSSEFADSADLGSGAAGDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLSSGSAGGAAVGVAGGVDPATDHLFASSPVPPHFLHPHPGRPSSDHFLPFVPVAALQQHHHHHQQIAAAAAHPQLQPPYHRQVGHFGSPPNGQYEHPFLARQTQPVHRVGAQLHNSMLNHVEDLESANATGGRKVLTLFPTGDD 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6921384 6922304 + Bda005441.1 Bda11g00695 15803

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00695 306 Gene3D - 99 161 - -
Bda11g00695 306 SUPERFAMILY Homeodomain-like 99 159 IPR009057 -
Bda11g00695 306 Pfam Myb-like DNA-binding domain 106 154 IPR001005 -
Bda11g00695 306 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 107 158 IPR017930 -
Bda11g00695 306 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 306 IPR044841 GO:0003700|GO:0006355
Bda11g00695 306 MobiDBLite consensus disorder prediction 43 96 - -
Bda11g00695 306 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 103 155 IPR006447 GO:0003677
Bda11g00695 306 PANTHER HOMEODOMAIN-LIKE PROTEIN-RELATED 1 306 - -
Bda11g00695 306 MobiDBLite consensus disorder prediction 70 84 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00695 - - - csv:101216969 435.647
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g00695 Bda-Chr11:6921384 Bda11g00187 Bda-Chr11:2406265 5.68E-24 dispersed
Bda09g01515 Bda-Chr9:46870769 Bda11g00695 Bda-Chr11:6921384 1.27E-40 transposed
Bda11g00695 Bda-Chr11:6921384 Bda03g01158 Bda-Chr3:12761839 4.26E-24 wgd
Bda11g00695 Bda-Chr11:6921384 Bda03g00582 Bda-Chr3:4845047 1.91E-165 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda11g00350 . 12 265 G2-like Transcription Factor Family AT3G24120 61.4 7.8e-76 280.8
Bda13g00487 . 12 310 G2-like Transcription Factor Family AT3G24120 53.3 3.5e-68 255.4
Bda14g00491 . 23 174 G2-like Transcription Factor Family AT3G24120 60.4 4.8e-41 165.2
Bda13g01813 . 1 248 G2-like Transcription Factor Family AT5G16560 51.1 9.3e-48 188.0
Bda01g02090 CCT 10 246 G2-like Transcription Factor Family AT1G25550 54.7 6.8e-58 221.1
Bda07g01528 CCT 13 245 G2-like Transcription Factor Family AT1G25550 58.6 1.4e-55 213.4
Bda07g01528 CCT 13 299 G2-like Transcription Factor Family AT1G68670 51.6 2.7e-67 252.7
Bda01g02090 CCT 10 279 G2-like Transcription Factor Family AT1G68670 53.2 2.5e-65 246.1
Bda07g01528 CCT 13 245 G2-like Transcription Factor Family AT3G25790 51.6 6.8e-44 174.5
Bda09g01515 . 1 269 G2-like Transcription Factor Family AT3G46640 52.6 1.5e-64 243.4
Bda11g00695 . 1 306 G2-like Transcription Factor Family AT5G05090 53.6 5.5e-73 271.2
Bda03g00582 . 1 308 G2-like Transcription Factor Family AT5G05090 51.6 9.1e-68 253.8
Bda11g00350 . 12 312 G2-like Transcription Factor Family AT4G13640 54.2 4.8e-62 235.0
Bda13g00487 . 12 310 G2-like Transcription Factor Family AT4G13640 54.6 1.2e-57 220.3
Bda11g00350 . 12 265 G2-like Transcription Factor Family AT3G24120 61.4 7.8e-76 280.8
Bda13g00487 . 12 310 G2-like Transcription Factor Family AT3G24120 53.3 3.5e-68 255.4
Bda14g00491 . 23 174 G2-like Transcription Factor Family AT3G24120 60.4 4.8e-41 165.2
Bda05g01256 . 45 274 G2-like Transcription Factor Family AT1G69580 51.7 5.9e-40 161.8
Bda14g00491 . 1 279 G2-like Transcription Factor Family AT1G79430 53.9 2.0e-70 263.1
Bda11g00350 . 24 200 G2-like Transcription Factor Family AT1G79430 56.4 4.5e-38 155.6
Bda13g00487 . 36 189 G2-like Transcription Factor Family AT1G79430 64.1 1.9e-36 150.2
Bda09g01572 . 56 269 G2-like Transcription Factor Family AT2G01060 68.7 6.2e-60 227.6
Bda11g00695 . 1 306 G2-like Transcription Factor Family AT3G10760 65.7 1.9e-94 342.8
Bda03g00582 . 1 308 G2-like Transcription Factor Family AT3G10760 64.8 3.3e-91 332.0
Bda11g00695 . 1 208 G2-like Transcription Factor Family AT2G40970 63.6 9.7e-64 240.4
Bda03g00582 . 1 208 G2-like Transcription Factor Family AT2G40970 64.6 2.6e-61 232.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001839 2 2 1 2 2 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 1 2 4 2 1 67
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
16617 PF00249 Myb_DNA-binding 2.30E-08 CL0123 Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g00695 Bda_Chr11 FPKM 1.21091 1.251612 1.227331 1.221749 2.859693 2.170482 1.799274 0.601613 0.673673