Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00754 ATGGCTGACCCGTGGTTCGGTGTTCATCAGAGGAGGACGCTTGTTCAAGCTTCGAAATGGAGTGACCAGAAAACTCCCTACGAAACACTTGAGCTAGAAAGAGATGCTGATGAGGAGCAGATAAAGGTAGCTTACAGGCGATTGGCCAAATTTTATCATCCAGATGTCTATGATGGTAGAGGAACACTTGAGGAAGGTGAAACTGCTGAAGCAAGATTCATTAAGATCCAAGCAGCCTATGAGTTGCTCATAGATGAAGAGAAGAGGAGTCAATATGATATAGATAATCGAGTTAACCCAATGAAGGCTTCTCAAGCATGGATGGAGTGGCTTATAAAAAAGCGAAAAGCTTTTGATCAGCGTGGTGATATGGCGATAGCAGCTTGGGCAGAACAGCAGCAGCTTGAGTTACATCTCCGCGTACGGCGCCTTTCTCGATCAAAGATTGATCCCGATGAAGAGAGAAGAATCCTAGCAAAGGAGAAAAAGGCGTCGGCCTGA 501 45.51 MADPWFGVHQRRTLVQASKWSDQKTPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEEGETAEARFIKIQAAYELLIDEEKRSQYDIDNRVNPMKASQAWMEWLIKKRKAFDQRGDMAIAAWAEQQQLELHLRVRRLSRSKIDPDEERRILAKEKKASA 166
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7546006 7547819 - Bda005499.1 Bda11g00754 15862

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00754 166 Gene3D DnaJ domain 10 109 IPR036869 -
Bda11g00754 166 PANTHER CO-CHAPERONE PROTEIN DJLA 19 165 - -
Bda11g00754 166 Coils Coil 27 47 - -
Bda11g00754 166 ProSitePatterns Nt-dnaJ domain signature. 73 92 IPR018253 -
Bda11g00754 166 SMART dnaj_3 24 88 IPR001623 -
Bda11g00754 166 SUPERFAMILY Chaperone J-domain 15 94 IPR036869 -
Bda11g00754 166 Pfam DnaJ domain 26 93 IPR001623 -
Bda11g00754 166 PANTHER LD30543P 19 165 - -
Bda11g00754 166 CDD DnaJ 25 85 IPR001623 -
Bda11g00754 166 PRINTS DnaJ domain signature 45 60 IPR001623 -
Bda11g00754 166 PRINTS DnaJ domain signature 27 45 IPR001623 -
Bda11g00754 166 PRINTS DnaJ domain signature 68 88 IPR001623 -
Bda11g00754 166 PRINTS DnaJ domain signature 114 133 IPR001623 -
Bda11g00754 166 ProSiteProfiles dnaJ domain profile. 25 96 IPR001623 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00754 - - - pvy:116131559 300.827
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g00754 Bda-Chr11:7546006 Bda01g02065 Bda-Chr1:56861897 2.90E-11 dispersed
Bda11g00754 Bda-Chr11:7546006 Bda04g00097 Bda-Chr4:2083164 2.13E-11 transposed
Bda11g00754 Bda-Chr11:7546006 Bda14g00609 Bda-Chr14:4588985 3.56E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g345 . . . . Bpe02g00088 . . Bma01g02630 . . . . . . Sed04g0058 . . Bhi04g00721 Tan02g2350 Cmetu03g2083 . . . . Cla08g01081 Cam08g1532 Cec08g1108 Cco08g1235 Clacu08g1237 . Cre08g1018 . . . . . . . Cme03g01491 . . Bda11g00754 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g00937 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005322 1 1 0 1 1 3 1 3 1 1 2 3 1 1 1 1 3 2 1 1 1 1 1 1 1 1 1 1 2 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g00754 Bda_Chr11 FPKM 0.851485 0.742929 12.949648 15.884232 0.748674 0.35382 0.14399 93.405067 84.261604