Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00760 ATGGTGAACTACGCCGAAAGAAATGACTCGGCCTGCTTATACTTATCGGGGATTTTCCGCCGTCGATGCCCAAATAAATCGTCGGTGTACTCACTTCCGACGAAAAAGATTTTAGAAGAGATGAATTCTAAAAATTTGCCCAAAACTGCTAAAGTTTCAGCAGTAGAAACAGAGACCAAACTGGTCGTTGATAACCCTGCCGCCGATCAGCCAAAGCCACTTAACTCTCAACAAAACTATCAAGCTCGACGGCTTTCCGATGCCGCAGCTAGAAGCTCAACATCATCATCCTCCACTCTTTCCAGCCAAGCTAAAGTGAGTCATCCCAAATCTCCGGTTATTGGTCACATAGGTAACTTGCGAATGGCCGGAAATGGCAGTCTATCAGCAGGCAATACTCCCAAAGCCTCAAATAAAGAAATAATTACCTCTCTCTCTAAAATTAGCGGGAGTGGAAACATGGGCAACATTTTTGGACAATTTCATGGTCTTCGAAGCAAAATTGACCCAGACACTTTAAAATCCATGGGAAACGAGGCTTACAATATGGGTAGATTCGAGGAGGCTTTGAATTTGTATGACCGAGCTACAGCTTTGGATCCTGACAACGCCGTCTATCACTGCAACAAAAGCGCCGCTCTAATGAGCTTAGACCGGCTAGCTGAGGCCGTTGACGAATGCCGGCTGGCCATTCGGATTCAACCTTCTCATTGCAGAGCTCATCACCGATTAGCAACGTTACTGGGAGAAACAGAGAAAGCGTTATATCACTTCGGAGAATCAGGCAATCGTGGTGATGATAAAGACATTAACAAAACGTATGCTCTTCAGAATTGCCTGTCCAGGTGCTCTGAAGCTAGACAATCGCAATCATGGAAAATTCTGCTGAAAGAGACGCAGCTAGCAATCTCCATGGGAGCCAAATCATCGCATAAGTTGTATGTCCTGCAATCGGAGGCGTTACTAAGGCTTCGAAGGCATCAAGAGGCTTACGCAGCCTACGAGCGGGGTCGAAATCTGAGAAATGAGTTCGCGAAGGTGATCGACATTGCCGACAGAGCTTACCATTTAATGATCGAAGCTCAGATTTACTTGACAATGGGAAGATTTGAGGAGGCTCTGTTAGCAGCCCAACAAGCGGCGGAAATCGATCCGACCAATGTGGAGATTAGCGCGGTGGCGAAGAGGGTCCGAACCATTTCGTCGGCGCGATTGAGCGGCAATCTACTGTTCAAAGCTTCCAGATTCTCCGAAGCATGTGTTGCTTACAGCGAAGGACTAGAGCTAGATCCGTACAACTCGGTTTTACTGTGCAACAGAGGGACATGTCGGTCAAAGCTTGGTCAATTCGAGAAAGCTATCGAAGACTGCTCCGTGGCTCTTAGCGTTCAACCTTCGTACAGTAAAGCCAGGCTTCGCAGGGCCAATTGTAATGCGAAATTGGAGAGGTGGGAGGCTTCGATTCAGGACTACGAAGTGCTGATAAGAGAGATGCCTGCCAATGAGGAGGTGGGAAGGGGTTTGTTTGAAGTAAAACTGCAGCTCAAGAAACAGAGAGGGGAAGATGTTAAAGACATGAAATTTGGCTCCAATTTGGTGTCTGTTTCTAGCAATGATCGTTTCAGGCACTTCATCACATCTCCTGGGATGACGGTGGTTCTTTTCTGCCAAAAAAGGACCCATAAAAAAGAGTTGCAGGTCATGGAGAAAGTCTGCCGTAGATTCCCATCGGTAAACTTCCTCCAGGTACAGATAGAAGACCATCCCTTCCTAGCAAAATCAGAGGGAGTGAGTTCAATTCCAGCCTTCAAAATATACAAGAATGGATCAAGCGTCCGAGAATTTTCCGCCGCCGGCCCAGAATCGTTAGAAAGCGCCGTCAGATTGTTTAGCAGTTGA 1899 46.87 MVNYAERNDSACLYLSGIFRRRCPNKSSVYSLPTKKILEEMNSKNLPKTAKVSAVETETKLVVDNPAADQPKPLNSQQNYQARRLSDAAARSSTSSSSTLSSQAKVSHPKSPVIGHIGNLRMAGNGSLSAGNTPKASNKEIITSLSKISGSGNMGNIFGQFHGLRSKIDPDTLKSMGNEAYNMGRFEEALNLYDRATALDPDNAVYHCNKSAALMSLDRLAEAVDECRLAIRIQPSHCRAHHRLATLLGETEKALYHFGESGNRGDDKDINKTYALQNCLSRCSEARQSQSWKILLKETQLAISMGAKSSHKLYVLQSEALLRLRRHQEAYAAYERGRNLRNEFAKVIDIADRAYHLMIEAQIYLTMGRFEEALLAAQQAAEIDPTNVEISAVAKRVRTISSARLSGNLLFKASRFSEACVAYSEGLELDPYNSVLLCNRGTCRSKLGQFEKAIEDCSVALSVQPSYSKARLRRANCNAKLERWEASIQDYEVLIREMPANEEVGRGLFEVKLQLKKQRGEDVKDMKFGSNLVSVSSNDRFRHFITSPGMTVVLFCQKRTHKKELQVMEKVCRRFPSVNFLQVQIEDHPFLAKSEGVSSIPAFKIYKNGSSVREFSAAGPESLESAVRLFSS 632
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7663267 7667578 - Bda005509.1 Bda11g00760 15868

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00760 632 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 85 630 IPR044534 -
Bda11g00760 632 Pfam TPR repeat 177 213 - -
Bda11g00760 632 Pfam Tetratricopeptide repeat 423 455 - -
Bda11g00760 632 ProSiteProfiles TPR repeat region circular profile. 170 203 - -
Bda11g00760 632 Pfam Tetratricopeptide repeat 361 387 IPR019734 GO:0005515
Bda11g00760 632 SMART tpr_5 400 433 IPR019734 GO:0005515
Bda11g00760 632 SMART tpr_5 311 344 IPR019734 GO:0005515
Bda11g00760 632 SMART tpr_5 354 387 IPR019734 GO:0005515
Bda11g00760 632 SMART tpr_5 468 501 IPR019734 GO:0005515
Bda11g00760 632 SMART tpr_5 434 467 IPR019734 GO:0005515
Bda11g00760 632 SMART tpr_5 170 203 IPR019734 GO:0005515
Bda11g00760 632 SMART tpr_5 204 237 IPR019734 GO:0005515
Bda11g00760 632 ProSiteProfiles TPR repeat profile. 354 387 IPR019734 GO:0005515
Bda11g00760 632 SUPERFAMILY Thioredoxin-like 522 626 IPR036249 -
Bda11g00760 632 Gene3D Tetratricopeptide repeat domain 169 520 IPR011990 GO:0005515
Bda11g00760 632 Gene3D Glutaredoxin 524 631 - -
Bda11g00760 632 ProSiteProfiles TPR repeat profile. 434 467 IPR019734 GO:0005515
Bda11g00760 632 PANTHER INACTIVE TPR REPEAT THIOREDOXIN TTL3-LIKE PROTEIN 85 630 - -
Bda11g00760 632 SUPERFAMILY TPR-like 404 518 IPR011990 GO:0005515
Bda11g00760 632 ProSiteProfiles TPR repeat profile. 170 203 IPR019734 GO:0005515
Bda11g00760 632 CDD TRX_family 541 627 - -
Bda11g00760 632 Coils Coil 474 494 - -
Bda11g00760 632 MobiDBLite consensus disorder prediction 70 108 - -
Bda11g00760 632 SUPERFAMILY TPR-like 170 390 IPR011990 GO:0005515
Bda11g00760 632 MobiDBLite consensus disorder prediction 64 119 - -
Bda11g00760 632 Pfam Thioredoxin 561 626 IPR013766 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00760 K09527 DNAJC7; DnaJ homolog subfamily C member 7 - csv:101206173 662.144
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda03g00496 Bda11g00760 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g00087 Bda-Chr4:1854489 Bda11g00760 Bda-Chr11:7663267 3.08E-122 dispersed
Bda11g00760 Bda-Chr11:7663267 Bda11g01899 Bda-Chr11:54090803 2.16E-121 dispersed
Bda09g00915 Bda-Chr9:25823809 Bda11g00760 Bda-Chr11:7663267 7.57E-14 transposed
Bda11g00760 Bda-Chr11:7663267 Bda03g00496 Bda-Chr3:4230751 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g393 . Blo12g00702 . Bda03g00496 Bpe02g00100 Bpe04g00451 . Bma01g02620 . . Cma01g01421 Cma09g00648 . . . Cpe06g00508 . . . . . . . . . . . . . . . Cone4ag1347 Cone7ag1584 . . Lsi04g02348 Csa04g01848 . . . . Bda11g00760 . . . . . Sed12g1412 Cmo01g01471 Cmo09g00631 . . . Car09g00576 . Cpe02g00525 Bhi09g02612 Tan01g3963 Cmetu07g1933 . Hepe01g2241 Mch11g0789 . Cla11g01498 Cam11g1554 Cec11g1586 Cco11g1582 Clacu11g1712 Cmu11g1531 Cre11g1947 . . Chy07g00705 Cme07g00929
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005323 2 1 2 2 2 0 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g00760 Bda_Chr11 FPKM 4.723343 7.005216 0.0 0.277723 0.0 0.716473 0.608191 10.653087 8.371155