Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00766 ATGTCGGGTGGTGGGTGTAGCATAGTATGGTTCAGAAGAGATCTCAGGGTAGAAGATAACCCAGCTTTGGCTGCCGGAGTTCGAGCCGGCGCTGTAGTCGCAGTCTTCATCTGGGCGCCGGAAGAAGAAGGCCACTATTATCCGGGCAGGGTGTCGCGGTGGTGGCTTAAACAGAGCTTAGGTCAGCTCGATTTCTCTCTGAGAAGTCTCGGTTGCAATCTCGTCACTAAAAGATCGTCTGATAGCGTTTCTGCTTTGCTTGAGGTCGTCAAATCTACCGGCGCAACTCAGCTATTTTTCAACCATTTATACGATCCCTTATCACTGATTCGGGATCACAGAACGAAGGGGGTGTTAACAGCTAAAGGCATAGCCGTTAGATCATTCAATGCAGATTTACTGTATGAGCCATGGGATGTGAATGACGCCAATGGCCATCCTTTCTCTACCTTCGCATCCTTCTGGGAAAGATGCCTCAGCATGCCTTACGATCCAGAGGCGCCACTTCTCCCACCCAAACGCATAATTCCAGGAGATGTCCCTAGAGTCAACGGACAGTTGGCAGTTTCTCGAGCATTTGGAGACAAGAGCCTGAAATCTCATTTGCGATCAGACCCGGATATTCAAGATATTACCATCGATGCGAACACAGATGTATTGATCCTCGCAAGTGATGGTCTTTGGAAGGTAGCATACTTGTGTACAGCTTTAAGACATCAGGAGGATAATTCAAAAATAAATTTGTTTTTGGCTCAACAGGTAATGGAAAATCAAGAAGCAGTTGATATTGCAAGGAGGATCAAAGATCCTTTAAAAGCTGCCAAGCAATTGACTGTGGAAGCATTGAAGAAAGACAGCAAAGATGATATATCCTGCATTGTCGTAAGACTCAGGTGA 897 46.38 MSGGGCSIVWFRRDLRVEDNPALAAGVRAGAVVAVFIWAPEEEGHYYPGRVSRWWLKQSLGQLDFSLRSLGCNLVTKRSSDSVSALLEVVKSTGATQLFFNHLYDPLSLIRDHRTKGVLTAKGIAVRSFNADLLYEPWDVNDANGHPFSTFASFWERCLSMPYDPEAPLLPPKRIIPGDVPRVNGQLAVSRAFGDKSLKSHLRSDPDIQDITIDANTDVLILASDGLWKVAYLCTALRHQEDNSKINLFLAQQVMENQEAVDIARRIKDPLKAAKQLTVEALKKDSKDDISCIVVRLR 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7723238 7730158 + Bda005515.2 Bda11g00766 15874

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00766 298 SUPERFAMILY PP2C-like 180 297 IPR036457 -
Bda11g00766 298 CDD PP2Cc 179 297 IPR001932 -
Bda11g00766 298 PANTHER CRYPTOCHROME-1 1 187 - -
Bda11g00766 298 SMART PP2C_4 2 295 IPR001932 -
Bda11g00766 298 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 7 178 IPR036155 -
Bda11g00766 298 ProSiteProfiles PPM-type phosphatase domain profile. 1 297 IPR001932 -
Bda11g00766 298 Gene3D HUPs 1 160 IPR014729 -
Bda11g00766 298 Pfam DNA photolyase 7 163 IPR006050 -
Bda11g00766 298 Pfam Protein phosphatase 2C 179 230 IPR001932 -
Bda11g00766 298 PANTHER CRYPTOCHROME 1 187 IPR002081 -
Bda11g00766 298 Gene3D - 171 298 IPR036457 -
Bda11g00766 298 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 5 134 IPR006050 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00766 K12118 CRY1; cryptochrome 1 - mnt:21386640 334.339
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g00630 Bda-Chr11:6328341 Bda11g00766 Bda-Chr11:7723238 8.81E-40 dispersed
Bda11g00766 Bda-Chr11:7723238 Bda13g00064 Bda-Chr13:883157 3.94E-64 dispersed
Bda11g00766 Bda-Chr11:7723238 Bda03g00490 Bda-Chr3:4196127 9.04E-119 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g409 . Blo12g00706 . . Bpe02g00107 Bpe04g00446 . . . . Cma01g01604 Cma09g00509 Car01g01224 . . Cpe06g00379 . . . . . . . . . . . . . . . Cone4ag1336 Cone7ag1593 . . Lsi04g02232 Csa03g04443 Chy04g00257 . . . Bda11g00766 . . . . . . Cmo01g01651 Cmo09g00506 . . . Car09g00443 . Cpe02g00374 Bhi09g02431 . . . . . . Cla11g01379 Cam11g1436 Cec11g1464 Cco11g1460 Clacu11g1595 Cmu11g1414 Cre11g1834 . . . Cme04g00288
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0032144 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g00766 Bda_Chr11 FPKM 6.278627 6.376642 6.513384 5.724898 7.29635 6.74835 8.201816 6.662591 8.128845