Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda11g00783 CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTGTGTCTTTACACCTAGAAAGATACCCATTTTTTACTGCAACAAACGACACCAAAACCTGCTCAGAATATTGCTATCCAGCCTGCTCTTATGCCTGCTTTCCAGTCTTCAACTACCTCCAGCCGCCACCTCCTCCACCACGCTTCTACGCCGACCAACCCCATGATTCGTATATTTTACAGACAGCCGTCATCATTTCCGTCGTTCTCCTCTTCATCCTAGTCTTTATCTTCGTAGCCAAGGCCTGCATGAAACAGATGCCGGGTCCGCAGTCGCCGGAAAGAGTCATAGTGACCGAAGAAGAGGGGATTCTGAACGAGGTTAGGGTGGATAACCCTATCTGGTACATCTCCACTATTGGGCTGCAACAGTCTGTAATCAACTCCATTTCTATCTGTAAATACAAGAAGAATGAAGGGCTAGTCGAAGGGACTGACTGTTCTGTATGTTTAAGCGAGTTTCAAGAAAATGAAACTCTAAGGTTGTTGCCCAAATGTAGCCATGCTTTTCATATTTCTTGTATCGACACTTGGTTGAGATCTCACACAAATTGTCCTCTTTGTCGATCAATCATAGTCACTGATTCCGTAGCGGGCTCGGAAACTATGATCAGGGCTTTGATGGGGAGAGAGAATAATGGCGATCCGCGCTCTAACGGAGAGACCCAGTTGGAAAATTCTGGGAGTAACAGCGAATCAGGCCATAACTCGGGAGTTACAGACAATGAAGATGAAACGAGAACGACCCACGATGGCGATGAAAGAATTTCAAAAGAAGAAGATGATGGGGAAGAACGAGTAAGAAAGACGAAGGTTTCAAAGGATTCTTCATCATCTGAAACTTCCGAGGTTTAG 885 45.65 LSLSLSLSLSPVSLHLERYPFFTATNDTKTCSEYCYPACSYACFPVFNYLQPPPPPPRFYADQPHDSYILQTAVIISVVLLFILVFIFVAKACMKQMPGPQSPERVIVTEEEGILNEVRVDNPIWYISTIGLQQSVINSISICKYKKNEGLVEGTDCSVCLSEFQENETLRLLPKCSHAFHISCIDTWLRSHTNCPLCRSIIVTDSVAGSETMIRALMGRENNGDPRSNGETQLENSGSNSESGHNSGVTDNEDETRTTHDGDERISKEEDDGEERVRKTKVSKDSSSSETSEV 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7810461 7811345 + Bda005532.1 Bda11g00783 15891

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda11g00783 294 SUPERFAMILY RING/U-box 148 205 - -
Bda11g00783 294 MobiDBLite consensus disorder prediction 248 288 - -
Bda11g00783 294 Pfam Ring finger domain 156 199 IPR001841 -
Bda11g00783 294 MobiDBLite consensus disorder prediction 225 247 - -
Bda11g00783 294 CDD RING-H2_PA-TM-RING 156 199 - -
Bda11g00783 294 MobiDBLite consensus disorder prediction 219 294 - -
Bda11g00783 294 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 19 279 IPR044675 -
Bda11g00783 294 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 131 206 IPR013083 -
Bda11g00783 294 ProSiteProfiles Zinc finger RING-type profile. 157 199 IPR001841 -
Bda11g00783 294 SMART ring_2 157 198 IPR001841 -
Bda11g00783 294 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 19 279 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda11g00783 - - - tcc:18592096 219.935
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g00783 Bda-Chr11:7810461 Bda15g00493 Bda-Chr15:8059195 1.27E-52 dispersed
Bda11g00783 Bda-Chr11:7810461 Bda12g00528 Bda-Chr12:8224127 6.88E-24 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g458 . . . . Bpe02g00128 . . Bma01g02598 Cmo05g00542 . . . . . Sed04g0166 . . Bhi04g00790 Tan02g2426 Cmetu03g0381 . Hepe10g0470 . Lcy13g1534 Cla08g01133 Cam08g1590 Cec08g1160 Cco08g1286 Clacu08g1290 . Cre08g1072 Cone6ag1544 Cone9ag1461 . . . . . . . . Bda11g00783 . . . . . . . . . . Car05g00465 . Cpe11g00454 . . . . . . . . . . . . . . . Lsi08g00989 Csa02g02174 Chy03g01343 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011623 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda11g00783 Bda_Chr11 FPKM 10.535169 13.431836 15.980921 13.018407 23.718943 21.308332 23.362764 18.684921 20.220575